Wall clock time and date at job start Mon Mar 30 2020 04:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47118 * 2 1 4 4 C 1.50699 * 109.47046 * 240.00099 * 2 1 3 5 5 H 1.08000 * 120.00127 * 275.00225 * 4 2 1 6 6 C 1.37877 * 120.00196 * 95.00207 * 4 2 1 7 7 N 1.31520 * 119.99789 * 184.91633 * 6 4 2 8 8 Si 1.86797 * 120.00186 * 4.91720 * 6 4 2 9 9 H 1.48492 * 109.47292 * 84.82995 * 8 6 4 10 10 H 1.48502 * 109.47403 * 204.83625 * 8 6 4 11 11 H 1.48503 * 109.46844 * 324.83034 * 8 6 4 12 12 N 1.46499 * 109.47134 * 119.99806 * 2 1 3 13 13 C 1.34772 * 120.00041 * 274.99910 * 12 2 1 14 14 O 1.21282 * 119.99947 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99945 * 180.02562 * 13 12 2 16 16 H 1.09004 * 109.90249 * 318.89788 * 15 13 12 17 17 N 1.47898 * 110.08142 * 197.68918 * 15 13 12 18 18 C 1.48529 * 105.82214 * 265.88476 * 17 15 13 19 19 C 1.54942 * 103.22427 * 320.79462 * 18 17 15 20 20 C 1.53990 * 109.92052 * 79.99735 * 15 13 12 21 21 H 1.09003 * 110.30901 * 359.41104 * 20 15 13 22 22 C 1.52997 * 110.31228 * 237.34405 * 20 15 13 23 23 H 1.09001 * 109.46829 * 175.03509 * 1 2 3 24 24 H 1.08996 * 109.46883 * 295.03974 * 1 2 3 25 25 H 1.09004 * 109.46915 * 55.03648 * 1 2 3 26 26 H 0.97003 * 119.99594 * 180.02562 * 7 6 4 27 27 H 0.97003 * 119.99998 * 95.00206 * 12 2 1 28 28 H 1.00900 * 111.00061 * 145.36827 * 17 15 13 29 29 H 1.08997 * 110.67098 * 79.22268 * 18 17 15 30 30 H 1.08997 * 110.66925 * 202.19096 * 18 17 15 31 31 H 1.09003 * 110.72424 * 279.05332 * 19 18 17 32 32 H 1.09001 * 110.72384 * 155.77462 * 19 18 17 33 33 H 1.08994 * 109.47149 * 61.38587 * 22 20 15 34 34 H 1.08991 * 109.47433 * 181.39099 * 22 20 15 35 35 H 1.09004 * 109.47042 * 301.38771 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2291 6 6 2.3603 0.0121 -2.3581 7 7 2.7059 -0.6132 -3.4622 8 14 2.3137 1.8791 -2.3175 9 1 3.5992 2.3948 -1.7822 10 1 2.1058 2.3991 -3.6928 11 1 1.1987 2.3275 -1.4451 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1587 2.4114 15 6 2.6500 -0.7285 3.5875 16 1 2.2047 -1.7214 3.6508 17 7 2.3141 0.0526 4.7976 18 6 3.5066 0.8909 5.0825 19 6 4.6903 -0.0578 4.7671 20 6 4.1847 -0.8442 3.5360 21 1 4.5672 -0.3973 2.6184 22 6 4.6101 -2.3109 3.6287 23 1 -0.3633 -1.0238 -0.0889 24 1 -0.3633 0.4349 0.9311 25 1 -0.3633 0.5889 -0.8422 26 1 2.9370 -0.1049 -4.2554 27 1 2.2491 -1.6317 1.1526 28 1 2.1062 -0.5564 5.5748 29 1 3.5284 1.7634 4.4295 30 1 3.5221 1.1949 6.1291 31 1 4.8789 -0.7306 5.6038 32 1 5.5860 0.5121 4.5197 33 1 4.2036 -2.8614 2.7803 34 1 5.6980 -2.3752 3.6159 35 1 4.2316 -2.7411 4.5559 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299918332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:34 Heat of formation + Delta-G solvation = -71.527090 kcal Electronic energy + Delta-G solvation = -16259.556682 eV Core-core repulsion = 13676.771395 eV Total energy + Delta-G solvation = -2582.785287 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.15754 -38.87071 -36.57597 -34.38965 -32.95302 -31.88309 -30.06979 -27.35744 -26.95089 -23.79663 -22.30863 -21.39948 -20.90039 -19.20847 -18.02974 -17.55357 -16.75326 -16.22179 -15.84129 -15.53438 -14.88882 -14.56016 -14.47151 -14.23505 -13.78331 -13.74092 -13.22631 -13.08996 -12.97775 -12.78919 -12.56248 -12.44416 -11.94016 -11.88178 -11.79626 -11.64111 -11.24548 -10.86866 -10.67218 -9.76876 -9.49068 -8.40708 -6.46086 1.26336 1.30810 1.42265 1.84707 2.25098 2.41103 3.01174 3.32335 3.63521 3.79585 3.96740 4.17903 4.31770 4.46611 4.49222 4.53794 4.60782 4.72477 4.80867 4.83528 4.95980 5.08427 5.09875 5.12843 5.23575 5.34507 5.39471 5.44881 5.68804 5.78744 6.13576 6.53607 6.58575 6.98413 7.20483 7.56322 8.74238 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.033846 B = 0.007760 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.078650 B = 3607.536816 C = 3773.538325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.235 3.765 3 H 0.025 0.975 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.035 3.965 7 N -0.928 5.928 8 Si 0.925 3.075 9 H -0.276 1.276 10 H -0.275 1.275 11 H -0.260 1.260 12 N -0.706 5.706 13 C 0.504 3.496 14 O -0.587 6.587 15 C 0.066 3.934 16 H 0.119 0.881 17 N -0.667 5.667 18 C 0.045 3.955 19 C -0.142 4.142 20 C -0.113 4.113 21 H 0.051 0.949 22 C -0.137 4.137 23 H 0.059 0.941 24 H 0.034 0.966 25 H 0.046 0.954 26 H 0.271 0.729 27 H 0.403 0.597 28 H 0.358 0.642 29 H 0.048 0.952 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 -2.970 17.334 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.131 3.869 3 H 0.043 0.957 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.166 4.166 7 N -0.567 5.567 8 Si 0.750 3.250 9 H -0.202 1.202 10 H -0.200 1.200 11 H -0.185 1.185 12 N -0.356 5.356 13 C 0.291 3.709 14 O -0.467 6.467 15 C -0.048 4.048 16 H 0.137 0.863 17 N -0.297 5.297 18 C -0.084 4.084 19 C -0.180 4.180 20 C -0.134 4.134 21 H 0.070 0.930 22 C -0.194 4.194 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.238 0.762 28 H 0.177 0.823 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.839 -1.597 16.852 17.164 hybrid contribution 0.742 -0.071 -0.511 0.903 sum 3.581 -1.668 16.341 16.812 Atomic orbital electron populations 1.22101 0.97307 1.01236 0.99237 1.18829 0.91855 0.92933 0.83280 0.95744 1.21194 1.44211 0.94857 0.96031 0.92308 1.25566 0.93840 1.02139 0.95035 1.69974 1.46693 1.37608 1.02403 0.86089 0.79513 0.81764 0.77649 1.20153 1.19997 1.18466 1.46366 1.65647 1.14312 1.09311 1.21307 0.77050 0.87286 0.85287 1.90585 1.52196 1.18220 1.85690 1.22253 0.95979 0.97057 0.89487 0.86290 1.62025 1.38284 1.23970 1.05446 1.23096 0.87329 0.96191 1.01825 1.23178 0.99006 0.98483 0.97378 1.22334 0.92784 0.98935 0.99355 0.93032 1.21822 1.02149 0.92505 1.02913 0.92223 0.94727 0.93517 0.92004 0.76193 0.82337 0.93313 0.88057 0.88346 0.90694 0.92331 0.91471 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.28 9.47 71.98 0.68 -5.60 16 2 C 0.24 11.49 2.22 44.25 0.10 11.59 16 3 H 0.02 1.32 4.73 -2.38 -0.01 1.31 16 4 C -0.52 -28.77 9.05 25.60 0.23 -28.54 16 5 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 6 C 0.03 1.98 5.47 84.65 0.46 2.44 16 7 N -0.93 -55.59 13.96 21.45 0.30 -55.29 16 8 Si 0.92 45.67 26.99 68.60 1.85 47.52 16 9 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 10 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.26 -12.76 6.82 99.48 0.68 -12.08 16 12 N -0.71 -28.86 5.07 -446.10 -2.26 -31.12 16 13 C 0.50 19.93 6.83 87.66 0.60 20.53 16 14 O -0.59 -28.51 15.96 -3.04 -0.05 -28.56 16 15 C 0.07 1.81 3.36 44.31 0.15 1.96 16 16 H 0.12 2.58 7.68 -2.39 -0.02 2.57 16 17 N -0.67 -17.07 6.76 -484.03 -3.27 -20.34 16 18 C 0.04 1.05 7.39 86.65 0.64 1.69 16 19 C -0.14 -2.73 6.61 31.80 0.21 -2.52 16 20 C -0.11 -2.69 3.21 -9.92 -0.03 -2.72 16 21 H 0.05 1.57 7.68 -2.39 -0.02 1.55 16 22 C -0.14 -2.37 8.89 71.98 0.64 -1.73 16 23 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 24 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 27 H 0.40 14.31 8.59 -92.71 -0.80 13.51 16 28 H 0.36 6.51 8.92 -89.69 -0.80 5.71 16 29 H 0.05 1.51 8.01 -2.39 -0.02 1.49 16 30 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.10 1.34 7.86 -2.39 -0.02 1.32 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -70.08 287.23 -0.29 -70.36 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -0.54 Total: 20.35 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 3.68 Total: -2.91 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -5.23 Total: -106.76 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.05 Total: -28.56 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.85 Total: 47.52 kcal Total: -70.08 -0.29 -70.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299918332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.163 kcal (2) G-P(sol) polarization free energy of solvation -70.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds