Wall clock time and date at job start Mon Mar 30 2020 04:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.49805 * 2 1 4 4 C 1.53032 * 109.50126 * 239.88450 * 2 1 3 5 5 N 1.46847 * 109.52562 * 180.88260 * 4 2 1 6 6 C 1.46840 * 111.19808 * 61.73611 * 5 4 2 7 7 C 1.53036 * 109.52594 * 298.26202 * 6 5 4 8 8 C 1.53117 * 109.50221 * 120.07976 * 2 1 3 9 9 H 1.09002 * 109.52261 * 57.68930 * 8 2 1 10 10 C 1.50704 * 109.52474 * 297.55955 * 8 2 1 11 11 O 1.21281 * 119.99968 * 0.13298 * 10 8 2 12 12 N 1.34770 * 119.99843 * 180.12574 * 10 8 2 13 13 C 1.46499 * 119.99922 * 180.02562 * 12 10 8 14 14 C 1.50699 * 109.47404 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99683 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00200 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99709 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99957 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47117 * 90.00001 * 18 16 14 20 20 H 1.48500 * 109.47361 * 210.00036 * 18 16 14 21 21 H 1.48498 * 109.47415 * 330.00075 * 18 16 14 22 22 H 1.09007 * 109.47136 * 299.92088 * 1 2 3 23 23 H 1.08996 * 109.47612 * 59.91666 * 1 2 3 24 24 H 1.08999 * 109.47189 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46249 * 300.89226 * 4 2 1 26 26 H 1.08999 * 109.46450 * 60.85992 * 4 2 1 27 27 H 1.00898 * 110.99940 * 185.84063 * 5 4 2 28 28 H 1.09000 * 109.46098 * 58.28124 * 6 5 4 29 29 H 1.09000 * 109.46247 * 178.24735 * 6 5 4 30 30 H 1.08999 * 109.50328 * 299.23405 * 7 6 5 31 31 H 1.09001 * 109.50559 * 179.12021 * 7 6 5 32 32 H 0.96999 * 120.00814 * 0.02562 * 12 10 8 33 33 H 1.09001 * 109.47350 * 300.00340 * 13 12 10 34 34 H 1.09000 * 109.47123 * 60.00465 * 13 12 10 35 35 H 0.97001 * 119.99842 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7238 -1.2478 5 7 3.5092 -0.7426 -1.2377 6 6 4.0229 -1.4730 -0.0720 7 6 3.5712 -0.7715 1.2109 8 6 2.0412 -0.7234 1.2490 9 1 1.6452 -1.7387 1.2695 10 6 1.5899 0.0183 2.4808 11 8 0.9227 1.0252 2.3719 12 7 1.9276 -0.4374 3.7033 13 6 1.4884 0.2833 4.9007 14 6 1.9953 -0.4275 6.1291 15 1 2.5860 -1.3260 6.0278 16 6 1.7051 0.0692 7.3821 17 7 0.9854 1.1630 7.5053 18 14 2.3341 -0.8115 8.9046 19 1 3.6682 -0.2728 9.2724 20 1 1.3867 -0.5965 10.0278 21 1 2.4475 -2.2653 8.6242 22 1 -0.3634 0.5126 0.8907 23 1 -0.3634 0.5151 -0.8892 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6647 -1.7468 -1.2538 26 1 1.6904 -0.2029 -2.1389 27 1 3.8718 -1.1300 -2.0959 28 1 3.6374 -2.4925 -0.0836 29 1 5.1120 -1.4963 -0.1090 30 1 3.9679 0.2435 1.2297 31 1 3.9395 -1.3228 2.0761 32 1 2.4615 -1.2426 3.7904 33 1 1.8845 1.2986 4.8795 34 1 0.3993 0.3185 4.9245 35 1 0.7809 1.5123 8.3869 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306269910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:41 Heat of formation + Delta-G solvation = -58.440212 kcal Electronic energy + Delta-G solvation = -15959.613495 eV Core-core repulsion = 13377.395698 eV Total energy + Delta-G solvation = -2582.217797 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.81712 -37.51775 -34.28083 -32.87516 -32.50714 -31.46505 -27.54281 -26.29292 -24.47255 -22.47114 -21.65920 -20.07343 -19.24752 -17.27683 -16.26944 -15.58896 -15.18528 -14.83817 -14.61374 -14.37107 -13.74155 -13.64093 -13.31953 -12.71731 -12.32542 -11.97284 -11.85254 -11.73295 -11.49062 -11.24837 -10.97403 -10.89472 -10.65110 -10.47408 -10.30987 -10.20451 -9.38046 -8.82179 -8.71332 -8.53154 -7.83235 -6.15731 -4.22533 3.24508 3.30583 3.32946 3.41588 4.10818 4.12997 4.38232 4.75140 4.89570 5.07954 5.15372 5.20409 5.36158 5.48717 5.53780 5.60721 5.73128 5.77264 5.86963 5.92729 5.98184 6.25576 6.29780 6.58563 6.67692 6.94554 7.27458 7.33518 7.49201 7.54120 7.68613 7.98819 8.66765 8.80332 9.15475 9.44385 10.94533 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.045716 B = 0.005843 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.327491 B = 4791.279238 C = 5238.867085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.066 4.066 3 H 0.084 0.916 4 C 0.063 3.937 5 N -0.692 5.692 6 C 0.060 3.940 7 C -0.109 4.109 8 C -0.106 4.106 9 H 0.085 0.915 10 C 0.504 3.496 11 O -0.551 6.551 12 N -0.713 5.713 13 C 0.249 3.751 14 C -0.543 4.543 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.086 0.914 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.028 0.972 26 H 0.074 0.926 27 H 0.340 0.660 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.389 0.611 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.297 -6.953 -14.964 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.085 4.085 3 H 0.102 0.898 4 C -0.066 4.066 5 N -0.323 5.323 6 C -0.069 4.069 7 C -0.147 4.147 8 C -0.127 4.127 9 H 0.103 0.897 10 C 0.289 3.711 11 O -0.431 6.431 12 N -0.360 5.360 13 C 0.129 3.871 14 C -0.581 4.581 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 H 0.105 0.895 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.093 0.907 27 H 0.157 0.843 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.221 0.779 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.781 -5.483 -14.553 16.005 hybrid contribution 0.373 -1.787 0.727 1.965 sum 4.154 -7.270 -13.826 16.163 Atomic orbital electron populations 1.21980 0.94554 1.01205 1.03537 1.20895 0.95831 1.00233 0.91518 0.89757 1.22037 0.87213 0.98570 0.98815 1.60241 1.08444 1.58426 1.05149 1.21913 0.99635 0.94556 0.90776 1.21580 0.93728 1.02429 0.96999 1.21442 0.96761 1.00189 0.94342 0.89655 1.20373 0.80573 0.85423 0.84769 1.90596 1.39775 1.25944 1.86767 1.46479 1.53504 1.29338 1.06710 1.19087 0.95705 0.92428 0.79926 1.21231 1.34836 1.11367 0.90680 0.91975 1.24952 0.94862 0.94979 0.99219 1.69975 1.37251 1.20978 1.24106 0.86421 0.78660 0.79805 0.82056 1.20453 1.21008 1.19779 0.89509 0.93202 0.93792 0.95350 0.90739 0.84290 0.95186 0.90616 0.90515 0.90847 0.77866 0.95594 0.95629 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 8.91 37.16 0.33 -1.90 16 2 C -0.07 -0.93 2.02 -90.54 -0.18 -1.12 16 3 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 4 C 0.06 0.70 5.83 -3.84 -0.02 0.68 16 5 N -0.69 -7.39 6.84 -113.82 -0.78 -8.17 16 6 C 0.06 0.64 6.55 -3.84 -0.03 0.61 16 7 C -0.11 -1.42 5.26 -26.65 -0.14 -1.56 16 8 C -0.11 -1.58 2.10 -91.65 -0.19 -1.77 16 9 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 10 C 0.50 10.14 6.87 -10.99 -0.08 10.07 16 11 O -0.55 -13.15 13.82 5.56 0.08 -13.07 16 12 N -0.71 -15.17 5.45 -61.47 -0.34 -15.50 16 13 C 0.25 6.67 5.43 -5.19 -0.03 6.65 16 14 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 15 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 18 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 22 H 0.09 1.55 5.73 -51.93 -0.30 1.25 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.34 2.81 8.90 -39.29 -0.35 2.46 16 28 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.89 7.66 -51.93 -0.40 0.49 16 32 H 0.39 7.16 7.80 -40.82 -0.32 6.84 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 283.43 15.07 4.27 4.27 Total: -1.00 -31.35 283.43 -7.35 -38.69 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.54 Total: 5.22 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.75 Total: -1.82 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.38 Total: -49.20 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.35 -7.35 -38.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306269910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.748 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds