Wall clock time and date at job start Mon Mar 30 2020 04:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.49805 * 2 1 4 4 C 1.53032 * 109.50126 * 239.88450 * 2 1 3 5 5 N 1.46847 * 109.52562 * 180.88260 * 4 2 1 6 6 C 1.46840 * 111.19808 * 61.73611 * 5 4 2 7 7 C 1.53036 * 109.52594 * 298.26202 * 6 5 4 8 8 C 1.53117 * 109.50221 * 120.07976 * 2 1 3 9 9 H 1.09002 * 109.52261 * 57.68930 * 8 2 1 10 10 C 1.50704 * 109.52474 * 297.55955 * 8 2 1 11 11 O 1.21281 * 119.99968 * 0.13298 * 10 8 2 12 12 N 1.34770 * 119.99843 * 180.12574 * 10 8 2 13 13 C 1.46499 * 119.99922 * 180.02562 * 12 10 8 14 14 C 1.50699 * 109.47404 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99683 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00200 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99709 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99957 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47117 * 90.00001 * 18 16 14 20 20 H 1.48500 * 109.47361 * 210.00036 * 18 16 14 21 21 H 1.48498 * 109.47415 * 330.00075 * 18 16 14 22 22 H 1.09007 * 109.47136 * 299.92088 * 1 2 3 23 23 H 1.08996 * 109.47612 * 59.91666 * 1 2 3 24 24 H 1.08999 * 109.47189 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46249 * 300.89226 * 4 2 1 26 26 H 1.08999 * 109.46450 * 60.85992 * 4 2 1 27 27 H 1.00898 * 110.99940 * 185.84063 * 5 4 2 28 28 H 1.09000 * 109.46098 * 58.28124 * 6 5 4 29 29 H 1.09000 * 109.46247 * 178.24735 * 6 5 4 30 30 H 1.08999 * 109.50328 * 299.23405 * 7 6 5 31 31 H 1.09001 * 109.50559 * 179.12021 * 7 6 5 32 32 H 0.96999 * 120.00814 * 0.02562 * 12 10 8 33 33 H 1.09001 * 109.47350 * 300.00340 * 13 12 10 34 34 H 1.09000 * 109.47123 * 60.00465 * 13 12 10 35 35 H 0.97001 * 119.99842 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7238 -1.2478 5 7 3.5092 -0.7426 -1.2377 6 6 4.0229 -1.4730 -0.0720 7 6 3.5712 -0.7715 1.2109 8 6 2.0412 -0.7234 1.2490 9 1 1.6452 -1.7387 1.2695 10 6 1.5899 0.0183 2.4808 11 8 0.9227 1.0252 2.3719 12 7 1.9276 -0.4374 3.7033 13 6 1.4884 0.2833 4.9007 14 6 1.9953 -0.4275 6.1291 15 1 2.5860 -1.3260 6.0278 16 6 1.7051 0.0692 7.3821 17 7 0.9854 1.1630 7.5053 18 14 2.3341 -0.8115 8.9046 19 1 3.6682 -0.2728 9.2724 20 1 1.3867 -0.5965 10.0278 21 1 2.4475 -2.2653 8.6242 22 1 -0.3634 0.5126 0.8907 23 1 -0.3634 0.5151 -0.8892 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6647 -1.7468 -1.2538 26 1 1.6904 -0.2029 -2.1389 27 1 3.8718 -1.1300 -2.0959 28 1 3.6374 -2.4925 -0.0836 29 1 5.1120 -1.4963 -0.1090 30 1 3.9679 0.2435 1.2297 31 1 3.9395 -1.3228 2.0761 32 1 2.4615 -1.2426 3.7904 33 1 1.8845 1.2986 4.8795 34 1 0.3993 0.3185 4.9245 35 1 0.7809 1.5123 8.3869 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306269910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:41 Heat of formation + Delta-G solvation = -82.869414 kcal Electronic energy + Delta-G solvation = -15960.672824 eV Core-core repulsion = 13377.395698 eV Total energy + Delta-G solvation = -2583.277127 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.24117 -38.83058 -36.20775 -34.45018 -33.98219 -32.68756 -29.42525 -27.53831 -25.78177 -24.32057 -22.69059 -21.58699 -20.57909 -18.99659 -17.71435 -17.08429 -16.94437 -16.22515 -16.10703 -15.72153 -15.05506 -14.86684 -14.63129 -14.22106 -14.02093 -13.75535 -13.20623 -12.90079 -12.84620 -12.76672 -12.65635 -12.37684 -12.21741 -11.79991 -11.63728 -11.50765 -11.26335 -10.80621 -10.44966 -9.80240 -9.32968 -8.29962 -6.46923 1.42485 1.45130 1.56335 1.77728 2.32095 2.60014 3.04878 3.32270 3.62423 3.84150 3.87783 4.15410 4.32029 4.45051 4.46840 4.60545 4.70038 4.74853 4.85754 4.89495 4.99692 5.08069 5.18107 5.22853 5.25039 5.40268 5.44996 5.53071 5.71561 5.84708 6.10302 6.60981 6.64307 6.92093 7.22751 7.51146 8.82397 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.045716 B = 0.005843 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.327491 B = 4791.279238 C = 5238.867085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.066 4.066 3 H 0.053 0.947 4 C 0.072 3.928 5 N -0.703 5.703 6 C 0.066 3.934 7 C -0.108 4.108 8 C -0.094 4.094 9 H 0.110 0.890 10 C 0.498 3.502 11 O -0.594 6.594 12 N -0.707 5.707 13 C 0.267 3.733 14 C -0.556 4.556 15 H 0.084 0.916 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.986 3.014 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.255 1.255 22 H 0.043 0.957 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.358 0.642 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.406 0.594 33 H -0.016 1.016 34 H -0.014 1.014 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 -9.760 -15.878 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.057 4.057 5 N -0.337 5.337 6 C -0.063 4.063 7 C -0.147 4.147 8 C -0.115 4.115 9 H 0.128 0.872 10 C 0.285 3.715 11 O -0.476 6.476 12 N -0.357 5.357 13 C 0.144 3.856 14 C -0.594 4.594 15 H 0.102 0.898 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.809 3.191 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.178 1.178 22 H 0.062 0.938 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.178 0.822 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.242 0.758 33 H 0.002 0.998 34 H 0.004 0.996 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.357 -8.329 -15.516 18.407 hybrid contribution -0.149 -0.833 0.956 1.277 sum 5.208 -9.163 -14.560 17.974 Atomic orbital electron populations 1.21899 0.94859 1.01920 1.02255 1.20890 0.95661 0.99024 0.92974 0.92870 1.21912 0.87674 0.99047 0.97103 1.60160 1.08111 1.59214 1.06175 1.21887 1.00719 0.94745 0.88964 1.21609 0.91769 1.01777 0.99495 1.21462 0.98401 1.00331 0.91311 0.87171 1.21454 0.79195 0.85025 0.85782 1.90586 1.41437 1.28102 1.87443 1.46229 1.54004 1.29701 1.05757 1.18517 0.93100 0.91323 0.82682 1.21617 1.34960 1.11993 0.90809 0.89834 1.26087 0.94723 0.95616 1.03198 1.70143 1.38750 1.22964 1.25196 0.85140 0.77944 0.79156 0.76872 1.19566 1.20942 1.17841 0.93772 0.91474 0.91994 0.93611 0.89451 0.82241 0.93356 0.88871 0.92882 0.89790 0.75837 0.99767 0.99627 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 8.91 71.98 0.64 -3.65 16 2 C -0.07 -1.82 2.02 -10.74 -0.02 -1.85 16 3 H 0.05 1.79 8.04 -2.38 -0.02 1.77 16 4 C 0.07 1.38 5.83 86.32 0.50 1.89 16 5 N -0.70 -12.71 6.84 -514.03 -3.52 -16.23 16 6 C 0.07 1.15 6.55 86.33 0.57 1.71 16 7 C -0.11 -2.63 5.26 30.65 0.16 -2.46 16 8 C -0.09 -2.70 2.10 -11.46 -0.02 -2.72 16 9 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 10 C 0.50 20.64 6.87 87.66 0.60 21.24 16 11 O -0.59 -30.11 13.82 -3.03 -0.04 -30.15 16 12 N -0.71 -30.79 5.45 -466.80 -2.55 -33.33 16 13 C 0.27 14.99 5.43 85.63 0.46 15.46 16 14 C -0.56 -30.65 9.28 25.60 0.24 -30.41 16 15 H 0.08 4.15 7.60 -2.91 -0.02 4.12 16 16 C 0.00 0.18 5.46 84.66 0.46 0.64 16 17 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 18 Si 0.99 42.55 29.54 68.60 2.03 44.58 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 22 H 0.04 1.64 5.73 -2.38 -0.01 1.62 16 23 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.36 4.51 8.90 -89.70 -0.80 3.71 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.84 7.66 -2.39 -0.02 1.82 16 32 H 0.41 14.65 7.80 -92.71 -0.72 13.93 16 33 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 34 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 35 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -71.71 283.43 -0.64 -72.36 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -0.44 Total: 19.60 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 3.59 Total: -0.16 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -5.78 Total: -106.23 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.04 Total: -30.15 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -71.71 -0.64 -72.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306269910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.514 kcal (2) G-P(sol) polarization free energy of solvation -71.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds