Wall clock time and date at job start Mon Mar 30 2020 03:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.90586 * 2 1 4 4 C 1.54004 * 109.91672 * 238.90040 * 2 1 3 5 5 C 1.54598 * 105.13660 * 239.22263 * 4 2 1 6 6 H 1.09003 * 110.71992 * 96.58062 * 5 4 2 7 7 C 1.52992 * 110.72361 * 219.68289 * 5 4 2 8 8 N 1.46499 * 109.47267 * 185.00234 * 7 5 4 9 9 C 1.34784 * 119.99971 * 180.02562 * 8 7 5 10 10 O 1.21686 * 119.99841 * 359.72674 * 9 8 7 11 11 C 1.46368 * 119.99821 * 180.02562 * 9 8 7 12 12 H 1.07999 * 120.00129 * 359.97438 * 11 9 8 13 13 C 1.40045 * 119.99878 * 180.02562 * 11 9 8 14 14 N 1.30668 * 120.00214 * 0.02562 * 13 11 9 15 15 Si 1.86808 * 120.00091 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46841 * 60.00191 * 15 13 11 17 17 H 1.48495 * 109.47268 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47094 * 300.00585 * 15 13 11 19 19 C 1.54939 * 102.92180 * 338.04454 * 5 4 2 20 20 N 1.47900 * 110.08307 * 121.21366 * 2 1 3 21 21 C 1.46903 * 110.99578 * 265.29031 * 20 2 1 22 22 H 1.08996 * 109.46858 * 181.10023 * 1 2 3 23 23 H 1.09002 * 109.46925 * 301.09874 * 1 2 3 24 24 H 1.08999 * 109.46880 * 61.10405 * 1 2 3 25 25 H 1.08999 * 110.30531 * 120.30778 * 4 2 1 26 26 H 1.09001 * 110.30873 * 358.13775 * 4 2 1 27 27 H 1.09004 * 109.47330 * 65.00137 * 7 5 4 28 28 H 1.09005 * 109.47124 * 305.00341 * 7 5 4 29 29 H 0.96999 * 119.99984 * 359.97438 * 8 7 5 30 30 H 0.97000 * 120.00448 * 180.02562 * 14 13 11 31 31 H 1.09004 * 110.66306 * 155.84973 * 19 5 4 32 32 H 1.09006 * 110.66478 * 278.97666 * 19 5 4 33 33 H 1.08998 * 109.47439 * 59.99646 * 21 20 2 34 34 H 1.08998 * 109.47222 * 180.02562 * 21 20 2 35 35 H 1.09004 * 109.46940 * 299.99481 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7479 -1.2398 5 6 2.9101 -1.9075 -0.6798 6 1 2.3291 -2.8287 -0.6351 7 6 4.1715 -2.1056 -1.5225 8 7 4.8998 -3.2826 -1.0423 9 6 6.0507 -3.6525 -1.6383 10 8 6.4823 -3.0117 -2.5785 11 6 6.7780 -4.8287 -1.1588 12 1 6.3927 -5.3999 -0.3272 13 6 7.9741 -5.2127 -1.7777 14 7 8.4412 -4.5207 -2.7830 15 14 8.9028 -6.7135 -1.1654 16 1 8.0364 -7.9138 -1.2833 17 1 10.1281 -6.9047 -1.9821 18 1 9.2822 -6.5147 0.2564 19 6 3.2733 -1.4141 0.7433 20 7 2.0379 -0.7199 1.1880 21 6 2.3244 0.2130 2.2861 22 1 -0.3633 -1.0275 0.0197 23 1 -0.3633 0.5308 0.8800 24 1 -0.3633 0.4966 -0.8997 25 1 2.6685 -0.0851 -1.8497 26 1 1.2229 -1.1398 -1.8252 27 1 4.8078 -1.2247 -1.4369 28 1 3.8921 -2.2520 -2.5659 29 1 4.5541 -3.7952 -0.2949 30 1 9.2694 -4.7869 -3.2119 31 1 3.4975 -2.2570 1.3971 32 1 4.1130 -0.7200 0.7072 33 1 1.4117 0.7415 2.5613 34 1 2.6967 -0.3424 3.1468 35 1 3.0779 0.9321 1.9646 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306797095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:34 Heat of formation + Delta-G solvation = -46.723648 kcal Electronic energy + Delta-G solvation = -15691.388455 eV Core-core repulsion = 13109.678727 eV Total energy + Delta-G solvation = -2581.709729 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.34618 -37.11573 -34.00130 -32.42315 -31.93254 -30.79242 -27.00875 -26.08708 -25.28924 -23.38007 -20.48031 -19.92180 -19.56614 -17.13418 -15.77942 -15.53105 -15.17326 -14.69652 -14.06128 -13.91284 -13.90126 -13.46403 -12.82212 -12.62483 -12.34726 -12.22477 -11.78597 -11.51769 -11.29921 -11.18348 -11.08855 -10.92165 -10.68005 -10.51664 -10.36849 -10.32348 -10.19118 -8.81957 -8.45905 -7.58486 -7.45391 -6.15525 -4.61052 3.17751 3.22389 3.24428 3.97178 4.13037 4.60557 4.63706 4.66690 4.91724 5.10850 5.25973 5.34025 5.40717 5.42139 5.54509 5.65929 5.77643 5.79524 5.81285 5.86974 5.93602 5.96923 6.13841 6.17370 6.26822 6.53948 6.64703 6.91712 7.05663 7.45991 7.97049 8.14218 8.36287 9.05335 9.58110 10.63510 10.82299 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.053281 B = 0.005204 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.388000 B = 5379.578401 C = 5650.374822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.060 3.940 3 H 0.049 0.951 4 C -0.121 4.121 5 C -0.100 4.100 6 H 0.085 0.915 7 C 0.143 3.857 8 N -0.767 5.767 9 C 0.554 3.446 10 O -0.583 6.583 11 C -0.546 4.546 12 H 0.067 0.933 13 C 0.088 3.912 14 N -0.769 5.769 15 Si 0.907 3.093 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.268 1.268 19 C 0.042 3.958 20 N -0.521 5.521 21 C 0.017 3.983 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.380 0.620 30 H 0.268 0.732 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.427 6.703 7.343 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.049 4.049 3 H 0.067 0.933 4 C -0.160 4.160 5 C -0.119 4.119 6 H 0.103 0.897 7 C 0.017 3.983 8 N -0.423 5.423 9 C 0.358 3.642 10 O -0.466 6.466 11 C -0.584 4.584 12 H 0.085 0.915 13 C -0.132 4.132 14 N -0.398 5.398 15 Si 0.732 3.268 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.085 4.085 20 N -0.245 5.245 21 C -0.132 4.132 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.211 0.789 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -12.343 6.866 6.699 15.633 hybrid contribution 0.912 -0.316 0.464 1.071 sum -11.431 6.551 7.163 14.996 Atomic orbital electron populations 1.21739 0.94141 1.02317 1.00871 1.22398 0.96096 0.96085 0.90281 0.93258 1.22485 0.99573 0.97144 0.96750 1.22314 0.96617 0.98693 0.94270 0.89672 1.20877 0.90447 0.90348 0.96605 1.46124 1.27106 1.30468 1.38588 1.18211 0.78469 0.85264 0.82267 1.90593 1.68332 1.57203 1.30460 1.20861 1.07625 1.11679 1.18187 0.91495 1.25702 0.96894 0.96860 0.93716 1.70012 1.17702 1.35177 1.16938 0.86444 0.78939 0.82035 0.79369 1.19281 1.20589 1.19314 1.23298 0.90707 0.98428 0.96062 1.64680 1.27070 1.26226 1.06528 1.22490 1.00216 0.95338 0.95148 0.91890 0.93113 0.92573 0.91104 0.90741 0.93574 0.93235 0.78875 0.92102 0.89829 0.93352 0.91695 0.91320 0.95524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.33 37.16 0.35 -0.96 16 2 C 0.06 0.70 3.08 -66.64 -0.21 0.49 16 3 H 0.05 0.56 7.73 -51.93 -0.40 0.16 16 4 C -0.12 -1.52 6.15 -25.37 -0.16 -1.67 16 5 C -0.10 -1.46 3.07 -88.76 -0.27 -1.74 16 6 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 7 C 0.14 2.76 4.99 -4.05 -0.02 2.74 16 8 N -0.77 -17.32 5.47 -61.72 -0.34 -17.66 16 9 C 0.55 16.03 7.75 -12.99 -0.10 15.93 16 10 O -0.58 -19.24 15.02 5.20 0.08 -19.16 16 11 C -0.55 -15.63 9.54 -35.64 -0.34 -15.97 16 12 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 13 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 14 N -0.77 -23.40 11.83 55.55 0.66 -22.74 16 15 Si 0.91 20.32 29.56 -169.99 -5.02 15.30 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 C 0.04 0.60 5.92 -1.90 -0.01 0.59 16 20 N -0.52 -6.57 5.19 -230.78 -1.20 -7.77 16 21 C 0.02 0.18 9.40 60.07 0.56 0.75 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.90 7.85 -51.93 -0.41 0.49 16 26 H 0.07 0.85 7.69 -51.93 -0.40 0.46 16 27 H 0.05 0.96 7.99 -51.93 -0.42 0.54 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.38 7.55 8.45 -40.82 -0.34 7.21 16 30 H 0.27 7.40 8.29 -40.82 -0.34 7.07 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.73 7.76 -51.93 -0.40 0.33 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.28 8.00 -51.93 -0.42 -0.13 16 LS Contribution 289.86 15.07 4.37 4.37 Total: -1.00 -33.85 289.86 -7.46 -41.31 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.72 Total: 3.82 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.29 Total: 2.53 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.88 Total: -48.17 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.08 Total: -19.16 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.85 -7.46 -41.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306797095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.412 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds