Wall clock time and date at job start Mon Mar 30 2020 03:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.90586 * 2 1 4 4 C 1.54004 * 109.91672 * 238.90040 * 2 1 3 5 5 C 1.54598 * 105.13660 * 239.22263 * 4 2 1 6 6 H 1.09003 * 110.71992 * 96.58062 * 5 4 2 7 7 C 1.52992 * 110.72361 * 219.68289 * 5 4 2 8 8 N 1.46499 * 109.47267 * 185.00234 * 7 5 4 9 9 C 1.34784 * 119.99971 * 180.02562 * 8 7 5 10 10 O 1.21686 * 119.99841 * 359.72674 * 9 8 7 11 11 C 1.46368 * 119.99821 * 180.02562 * 9 8 7 12 12 H 1.07999 * 120.00129 * 359.97438 * 11 9 8 13 13 C 1.40045 * 119.99878 * 180.02562 * 11 9 8 14 14 N 1.30668 * 120.00214 * 0.02562 * 13 11 9 15 15 Si 1.86808 * 120.00091 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46841 * 60.00191 * 15 13 11 17 17 H 1.48495 * 109.47268 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47094 * 300.00585 * 15 13 11 19 19 C 1.54939 * 102.92180 * 338.04454 * 5 4 2 20 20 N 1.47900 * 110.08307 * 121.21366 * 2 1 3 21 21 C 1.46903 * 110.99578 * 265.29031 * 20 2 1 22 22 H 1.08996 * 109.46858 * 181.10023 * 1 2 3 23 23 H 1.09002 * 109.46925 * 301.09874 * 1 2 3 24 24 H 1.08999 * 109.46880 * 61.10405 * 1 2 3 25 25 H 1.08999 * 110.30531 * 120.30778 * 4 2 1 26 26 H 1.09001 * 110.30873 * 358.13775 * 4 2 1 27 27 H 1.09004 * 109.47330 * 65.00137 * 7 5 4 28 28 H 1.09005 * 109.47124 * 305.00341 * 7 5 4 29 29 H 0.96999 * 119.99984 * 359.97438 * 8 7 5 30 30 H 0.97000 * 120.00448 * 180.02562 * 14 13 11 31 31 H 1.09004 * 110.66306 * 155.84973 * 19 5 4 32 32 H 1.09006 * 110.66478 * 278.97666 * 19 5 4 33 33 H 1.08998 * 109.47439 * 59.99646 * 21 20 2 34 34 H 1.08998 * 109.47222 * 180.02562 * 21 20 2 35 35 H 1.09004 * 109.46940 * 299.99481 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7479 -1.2398 5 6 2.9101 -1.9075 -0.6798 6 1 2.3291 -2.8287 -0.6351 7 6 4.1715 -2.1056 -1.5225 8 7 4.8998 -3.2826 -1.0423 9 6 6.0507 -3.6525 -1.6383 10 8 6.4823 -3.0117 -2.5785 11 6 6.7780 -4.8287 -1.1588 12 1 6.3927 -5.3999 -0.3272 13 6 7.9741 -5.2127 -1.7777 14 7 8.4412 -4.5207 -2.7830 15 14 8.9028 -6.7135 -1.1654 16 1 8.0364 -7.9138 -1.2833 17 1 10.1281 -6.9047 -1.9821 18 1 9.2822 -6.5147 0.2564 19 6 3.2733 -1.4141 0.7433 20 7 2.0379 -0.7199 1.1880 21 6 2.3244 0.2130 2.2861 22 1 -0.3633 -1.0275 0.0197 23 1 -0.3633 0.5308 0.8800 24 1 -0.3633 0.4966 -0.8997 25 1 2.6685 -0.0851 -1.8497 26 1 1.2229 -1.1398 -1.8252 27 1 4.8078 -1.2247 -1.4369 28 1 3.8921 -2.2520 -2.5659 29 1 4.5541 -3.7952 -0.2949 30 1 9.2694 -4.7869 -3.2119 31 1 3.4975 -2.2570 1.3971 32 1 4.1130 -0.7200 0.7072 33 1 1.4117 0.7415 2.5613 34 1 2.6967 -0.3424 3.1468 35 1 3.0779 0.9321 1.9646 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306797095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:34 Heat of formation + Delta-G solvation = -72.602582 kcal Electronic energy + Delta-G solvation = -15692.510650 eV Core-core repulsion = 13109.678727 eV Total energy + Delta-G solvation = -2582.831923 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.49733 -39.15254 -35.70805 -34.54331 -33.07238 -32.19218 -28.87749 -27.23453 -26.65419 -24.64265 -21.89439 -21.49908 -20.92651 -19.13271 -17.44806 -17.06879 -16.52920 -15.89031 -15.71965 -15.67608 -15.19051 -14.61638 -14.32668 -14.13590 -13.52060 -13.33103 -13.25312 -13.09533 -12.78855 -12.69652 -12.60346 -12.24359 -12.07693 -12.03454 -11.82518 -11.63953 -11.49394 -10.91568 -9.87991 -9.50394 -9.43147 -8.28816 -6.85697 1.40791 1.44450 1.56200 2.25510 2.47365 2.95845 3.12474 3.56989 3.64951 3.72876 3.95335 4.14307 4.35091 4.42192 4.49229 4.51978 4.58417 4.70702 4.80587 4.84023 4.89940 4.98121 4.99514 5.06780 5.17645 5.28062 5.31983 5.43698 5.87585 5.89795 6.10349 6.23588 6.27669 6.86804 7.55495 8.49217 8.67556 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.053281 B = 0.005204 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.388000 B = 5379.578401 C = 5650.374822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.059 3.941 3 H 0.053 0.947 4 C -0.119 4.119 5 C -0.089 4.089 6 H 0.092 0.908 7 C 0.148 3.852 8 N -0.753 5.753 9 C 0.535 3.465 10 O -0.635 6.635 11 C -0.575 4.575 12 H 0.089 0.911 13 C 0.028 3.972 14 N -0.824 5.824 15 Si 0.999 3.001 16 H -0.254 1.254 17 H -0.275 1.275 18 H -0.254 1.254 19 C 0.045 3.955 20 N -0.524 5.524 21 C 0.015 3.985 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.027 0.973 28 H 0.034 0.966 29 H 0.395 0.605 30 H 0.274 0.726 31 H 0.084 0.916 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.486 5.866 8.948 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.049 4.049 3 H 0.071 0.929 4 C -0.158 4.158 5 C -0.108 4.108 6 H 0.110 0.890 7 C 0.023 3.977 8 N -0.408 5.408 9 C 0.340 3.660 10 O -0.523 6.523 11 C -0.611 4.611 12 H 0.107 0.893 13 C -0.187 4.187 14 N -0.453 5.453 15 Si 0.818 3.182 16 H -0.178 1.178 17 H -0.199 1.199 18 H -0.178 1.178 19 C -0.082 4.082 20 N -0.249 5.249 21 C -0.133 4.133 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.229 0.771 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -13.466 6.040 8.350 16.957 hybrid contribution 1.189 0.016 -0.036 1.190 sum -12.277 6.056 8.314 16.016 Atomic orbital electron populations 1.21703 0.92390 1.02371 1.02040 1.22476 0.97410 0.95854 0.89194 0.92933 1.22507 0.99537 0.96237 0.97471 1.22172 0.94460 1.00078 0.94090 0.88963 1.20928 0.91830 0.88210 0.96771 1.45797 1.25675 1.31108 1.38176 1.18647 0.79884 0.85483 0.82029 1.90546 1.70161 1.58815 1.32797 1.21425 1.08511 1.12071 1.19102 0.89335 1.26998 0.97687 1.00644 0.93345 1.70187 1.18590 1.37793 1.18735 0.85053 0.77173 0.76820 0.79121 1.17754 1.19931 1.17795 1.23198 0.91140 0.98378 0.95521 1.64724 1.25809 1.27089 1.07244 1.22561 1.01084 0.95095 0.94572 0.92336 0.92283 0.91148 0.91604 0.89262 0.95420 0.94794 0.77094 0.91569 0.89810 0.94828 0.89946 0.90891 0.95788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.33 71.98 0.67 -1.48 16 2 C 0.06 1.25 3.08 45.06 0.14 1.39 16 3 H 0.05 1.10 7.73 -2.39 -0.02 1.08 16 4 C -0.12 -2.84 6.15 31.48 0.19 -2.64 16 5 C -0.09 -2.55 3.07 -9.59 -0.03 -2.58 16 6 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 7 C 0.15 5.86 4.99 86.38 0.43 6.29 16 8 N -0.75 -34.52 5.47 -467.41 -2.56 -37.08 16 9 C 0.54 31.80 7.75 86.36 0.67 32.47 16 10 O -0.64 -43.72 15.02 -4.30 -0.06 -43.79 16 11 C -0.57 -33.03 9.54 24.83 0.24 -32.79 16 12 H 0.09 4.53 7.85 -2.91 -0.02 4.50 16 13 C 0.03 1.59 5.50 85.30 0.47 2.06 16 14 N -0.82 -51.22 11.83 21.83 0.26 -50.96 16 15 Si 1.00 41.22 29.56 68.60 2.03 43.25 16 16 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 17 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 19 C 0.05 1.24 5.92 86.65 0.51 1.76 16 20 N -0.52 -12.26 5.19 -884.05 -4.59 -16.85 16 21 C 0.02 0.30 9.40 127.69 1.20 1.50 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 1.64 7.85 -2.39 -0.02 1.62 16 26 H 0.09 1.87 7.69 -2.39 -0.02 1.85 16 27 H 0.03 1.19 7.99 -2.38 -0.02 1.18 16 28 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.40 15.58 8.45 -92.71 -0.78 14.80 16 30 H 0.27 15.46 8.29 -92.71 -0.77 14.69 16 31 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.03 1.01 7.76 -2.38 -0.02 0.99 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.02 0.48 8.00 -2.38 -0.02 0.46 16 Total: -1.00 -74.83 289.86 -0.15 -74.98 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.28 Total: 24.49 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 4.49 Total: 5.96 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -6.89 Total: -104.89 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.06 Total: -43.79 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -74.83 -0.15 -74.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306797095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.382 kcal (2) G-P(sol) polarization free energy of solvation -74.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds