Wall clock time and date at job start Mon Mar 30 2020 03:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46577 * 2 1 4 4 C 1.53036 * 109.46207 * 119.96660 * 2 1 3 5 5 C 1.53129 * 109.27964 * 179.19812 * 4 2 1 6 6 C 1.53120 * 109.15857 * 302.34598 * 5 4 2 7 7 H 1.09008 * 109.53289 * 297.69781 * 6 5 4 8 8 C 1.50694 * 109.50144 * 177.59559 * 6 5 4 9 9 O 1.21279 * 120.00052 * 0.19721 * 8 6 5 10 10 N 1.34780 * 119.99906 * 180.19487 * 8 6 5 11 11 C 1.46499 * 120.00028 * 179.97438 * 10 8 6 12 12 C 1.50700 * 109.46732 * 179.97438 * 11 10 8 13 13 H 1.07996 * 120.00451 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99435 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99763 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00288 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47045 * 89.99749 * 16 14 12 18 18 H 1.48501 * 109.47001 * 209.99721 * 16 14 12 19 19 H 1.48498 * 109.47185 * 329.99641 * 16 14 12 20 20 C 1.53039 * 109.27608 * 57.65212 * 6 5 4 21 21 N 1.46839 * 109.52602 * 300.81935 * 20 6 5 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46832 * 59.97975 * 1 2 3 24 24 H 1.09004 * 109.47261 * 299.97956 * 1 2 3 25 25 H 1.09008 * 109.50634 * 299.13525 * 4 2 1 26 26 H 1.08996 * 109.50609 * 59.25426 * 4 2 1 27 27 H 1.08997 * 109.51980 * 182.44030 * 5 4 2 28 28 H 1.09000 * 109.57182 * 62.27913 * 5 4 2 29 29 H 0.97006 * 119.99856 * 359.97438 * 10 8 6 30 30 H 1.08992 * 109.46974 * 300.00143 * 11 10 8 31 31 H 1.08999 * 109.46967 * 60.00466 * 11 10 8 32 32 H 0.96998 * 119.99856 * 179.97438 * 15 14 12 33 33 H 1.09006 * 109.46110 * 180.80356 * 20 6 5 34 34 H 1.09001 * 109.45482 * 60.83846 * 20 6 5 35 35 H 1.00902 * 111.00369 * 297.64698 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 1.2500 5 6 3.5710 -0.7358 1.2357 6 6 4.0549 -1.4187 -0.0465 7 1 3.7130 -2.4537 -0.0595 8 6 5.5606 -1.3854 -0.0968 9 8 6.1862 -0.8700 0.8053 10 7 6.2121 -1.9283 -1.1444 11 6 7.6758 -1.8954 -1.1936 12 6 8.1510 -2.5641 -2.4577 13 1 7.4344 -2.9723 -3.1550 14 6 9.5008 -2.6537 -2.7247 15 7 9.9156 -3.2377 -3.8277 16 14 10.7403 -1.9470 -1.5191 17 1 11.1193 -2.9889 -0.5311 18 1 11.9496 -1.5011 -2.2568 19 1 10.1375 -0.7892 -0.8110 20 6 3.4865 -0.6777 -1.2589 21 7 2.0194 -0.6918 -1.1993 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5142 -0.8898 24 1 -0.3634 0.5135 0.8902 25 1 1.6895 -0.1979 2.1400 26 1 1.6659 -1.7445 1.2579 27 1 3.9379 -1.2860 2.1022 28 1 3.9466 0.2869 1.2678 29 1 5.7116 -2.3409 -1.8657 30 1 8.0166 -0.8602 -1.1794 31 1 8.0803 -2.4230 -0.3298 32 1 10.8651 -3.3004 -4.0157 33 1 3.8175 -1.1700 -2.1734 34 1 3.8404 0.3532 -1.2530 35 1 1.6647 -1.6355 -1.2423 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306851000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:18 Heat of formation + Delta-G solvation = -59.774327 kcal Electronic energy + Delta-G solvation = -15768.761685 eV Core-core repulsion = 13186.486036 eV Total energy + Delta-G solvation = -2582.275648 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.92373 -37.97779 -34.36017 -32.89896 -32.26075 -31.64861 -28.48832 -26.92273 -23.56111 -22.87018 -21.55274 -20.61772 -19.62285 -17.32777 -16.14324 -15.68640 -15.44627 -15.20903 -14.82031 -14.25254 -14.00804 -13.56150 -13.26464 -12.86726 -12.51735 -12.24387 -12.12227 -12.08787 -11.85874 -11.26077 -11.10185 -11.03549 -10.88340 -10.77657 -10.61351 -9.98325 -9.50450 -9.28349 -8.78849 -8.42737 -8.15610 -6.22387 -4.24671 3.19223 3.26244 3.32631 3.41099 3.88851 4.15531 4.32656 4.62600 4.69455 4.91125 4.98998 5.13033 5.17866 5.25024 5.32647 5.46516 5.54580 5.58870 5.70878 5.82116 5.93079 5.95794 6.03861 6.16065 6.29601 6.78811 6.89378 7.05810 7.20741 7.26099 7.38252 8.12099 8.50307 8.74037 8.91640 9.37805 10.89577 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.056629 B = 0.005479 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.331801 B = 5108.932027 C = 5464.280742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.078 3.922 3 H 0.081 0.919 4 C -0.151 4.151 5 C -0.098 4.098 6 C -0.145 4.145 7 H 0.091 0.909 8 C 0.506 3.494 9 O -0.559 6.559 10 N -0.704 5.704 11 C 0.219 3.781 12 C -0.544 4.544 13 H 0.080 0.920 14 C 0.078 3.922 15 N -0.892 5.892 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.261 1.261 20 C 0.068 3.932 21 N -0.677 5.677 22 H 0.053 0.947 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.396 0.604 30 H 0.025 0.975 31 H 0.020 0.980 32 H 0.268 0.732 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.943 4.216 7.035 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 H 0.099 0.901 4 C -0.191 4.191 5 C -0.136 4.136 6 C -0.168 4.168 7 H 0.109 0.891 8 C 0.290 3.710 9 O -0.438 6.438 10 N -0.352 5.352 11 C 0.097 3.903 12 C -0.582 4.582 13 H 0.098 0.902 14 C -0.126 4.126 15 N -0.529 5.529 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.185 1.185 20 C -0.063 4.063 21 N -0.305 5.305 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.230 0.770 30 H 0.043 0.957 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.375 5.089 7.124 18.569 hybrid contribution 0.862 -0.705 0.889 1.425 sum -15.513 4.385 8.013 18.003 Atomic orbital electron populations 1.21797 0.94412 1.01919 1.02022 1.21628 0.95076 0.98605 0.87849 0.90063 1.22343 0.96144 1.01109 0.99469 1.21348 0.94091 1.01772 0.96411 1.22102 0.93845 1.01917 0.98966 0.89061 1.20387 0.89229 0.78813 0.82559 1.90639 1.69188 1.46050 1.37921 1.46213 1.09549 1.57464 1.21980 1.19493 0.75877 0.97243 0.97663 1.21092 0.93449 1.38957 1.04655 0.90236 1.24798 0.98229 0.94318 0.95249 1.69882 1.15687 1.42739 1.24631 0.86816 0.80983 0.80516 0.81366 1.19876 1.20863 1.18548 1.22017 0.86990 1.01285 0.95965 1.60756 1.08305 1.22313 1.39165 0.92809 0.91854 0.92260 0.91268 0.91993 0.91321 0.91072 0.77024 0.95720 0.96260 0.92252 0.89714 0.90298 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.47 37.16 0.35 -0.76 16 2 C 0.08 0.75 3.03 -67.73 -0.21 0.55 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.15 -1.47 5.36 -26.65 -0.14 -1.62 16 5 C -0.10 -1.27 4.59 -26.60 -0.12 -1.39 16 6 C -0.14 -1.97 2.67 -91.69 -0.25 -2.22 16 7 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 8 C 0.51 9.59 7.16 -10.99 -0.08 9.52 16 9 O -0.56 -12.79 15.98 5.56 0.09 -12.70 16 10 N -0.70 -14.20 5.45 -61.48 -0.33 -14.53 16 11 C 0.22 5.43 4.50 -5.19 -0.02 5.40 16 12 C -0.54 -14.93 9.83 -34.44 -0.34 -15.27 16 13 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 14 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 15 N -0.89 -26.52 13.96 55.43 0.77 -25.74 16 16 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 20 C 0.07 0.83 5.73 -3.84 -0.02 0.81 16 21 N -0.68 -7.08 6.50 -106.77 -0.69 -7.77 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 29 H 0.40 7.02 7.76 -40.82 -0.32 6.71 16 30 H 0.02 0.65 7.20 -51.93 -0.37 0.27 16 31 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.08 1.02 7.59 -51.93 -0.39 0.63 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.34 3.12 8.79 -39.29 -0.35 2.77 16 LS Contribution 284.28 15.07 4.28 4.28 Total: -1.00 -31.33 284.28 -7.10 -38.43 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.62 Total: 4.04 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.92 Total: -2.88 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.26 Total: -48.05 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.33 -7.10 -38.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306851000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.349 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds