Wall clock time and date at job start Mon Mar 30 2020 03:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46577 * 2 1 4 4 C 1.53036 * 109.46207 * 119.96660 * 2 1 3 5 5 C 1.53129 * 109.27964 * 179.19812 * 4 2 1 6 6 C 1.53120 * 109.15857 * 302.34598 * 5 4 2 7 7 H 1.09008 * 109.53289 * 297.69781 * 6 5 4 8 8 C 1.50694 * 109.50144 * 177.59559 * 6 5 4 9 9 O 1.21279 * 120.00052 * 0.19721 * 8 6 5 10 10 N 1.34780 * 119.99906 * 180.19487 * 8 6 5 11 11 C 1.46499 * 120.00028 * 179.97438 * 10 8 6 12 12 C 1.50700 * 109.46732 * 179.97438 * 11 10 8 13 13 H 1.07996 * 120.00451 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99435 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99763 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00288 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47045 * 89.99749 * 16 14 12 18 18 H 1.48501 * 109.47001 * 209.99721 * 16 14 12 19 19 H 1.48498 * 109.47185 * 329.99641 * 16 14 12 20 20 C 1.53039 * 109.27608 * 57.65212 * 6 5 4 21 21 N 1.46839 * 109.52602 * 300.81935 * 20 6 5 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46832 * 59.97975 * 1 2 3 24 24 H 1.09004 * 109.47261 * 299.97956 * 1 2 3 25 25 H 1.09008 * 109.50634 * 299.13525 * 4 2 1 26 26 H 1.08996 * 109.50609 * 59.25426 * 4 2 1 27 27 H 1.08997 * 109.51980 * 182.44030 * 5 4 2 28 28 H 1.09000 * 109.57182 * 62.27913 * 5 4 2 29 29 H 0.97006 * 119.99856 * 359.97438 * 10 8 6 30 30 H 1.08992 * 109.46974 * 300.00143 * 11 10 8 31 31 H 1.08999 * 109.46967 * 60.00466 * 11 10 8 32 32 H 0.96998 * 119.99856 * 179.97438 * 15 14 12 33 33 H 1.09006 * 109.46110 * 180.80356 * 20 6 5 34 34 H 1.09001 * 109.45482 * 60.83846 * 20 6 5 35 35 H 1.00902 * 111.00369 * 297.64698 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 1.2500 5 6 3.5710 -0.7358 1.2357 6 6 4.0549 -1.4187 -0.0465 7 1 3.7130 -2.4537 -0.0595 8 6 5.5606 -1.3854 -0.0968 9 8 6.1862 -0.8700 0.8053 10 7 6.2121 -1.9283 -1.1444 11 6 7.6758 -1.8954 -1.1936 12 6 8.1510 -2.5641 -2.4577 13 1 7.4344 -2.9723 -3.1550 14 6 9.5008 -2.6537 -2.7247 15 7 9.9156 -3.2377 -3.8277 16 14 10.7403 -1.9470 -1.5191 17 1 11.1193 -2.9889 -0.5311 18 1 11.9496 -1.5011 -2.2568 19 1 10.1375 -0.7892 -0.8110 20 6 3.4865 -0.6777 -1.2589 21 7 2.0194 -0.6918 -1.1993 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5142 -0.8898 24 1 -0.3634 0.5135 0.8902 25 1 1.6895 -0.1979 2.1400 26 1 1.6659 -1.7445 1.2579 27 1 3.9379 -1.2860 2.1022 28 1 3.9466 0.2869 1.2678 29 1 5.7116 -2.3409 -1.8657 30 1 8.0166 -0.8602 -1.1794 31 1 8.0803 -2.4230 -0.3298 32 1 10.8651 -3.3004 -4.0157 33 1 3.8175 -1.1700 -2.1734 34 1 3.8404 0.3532 -1.2530 35 1 1.6647 -1.6355 -1.2423 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306851000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:18 Heat of formation + Delta-G solvation = -83.755013 kcal Electronic energy + Delta-G solvation = -15769.801565 eV Core-core repulsion = 13186.486036 eV Total energy + Delta-G solvation = -2583.315529 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.23088 -39.20366 -36.22376 -34.50815 -33.70797 -32.58327 -30.18803 -28.09321 -24.62715 -24.40851 -22.92395 -21.63996 -21.08704 -19.16276 -17.83802 -17.08653 -16.78271 -16.39580 -16.01847 -15.67768 -15.43804 -14.93573 -14.56708 -14.45257 -14.01443 -13.66398 -13.34923 -13.08669 -12.88308 -12.77326 -12.70607 -12.20597 -11.95871 -11.92550 -11.74562 -11.67099 -11.57113 -10.93549 -10.83702 -9.97427 -9.32920 -8.41485 -6.48518 1.30819 1.33337 1.45650 1.66491 2.26336 2.41660 2.93794 3.25023 3.65080 3.71721 3.91955 3.99518 4.20762 4.32258 4.45166 4.45626 4.72026 4.75493 4.80985 4.92088 4.97336 4.99617 5.06205 5.14583 5.16117 5.24131 5.35509 5.40977 5.49183 6.02208 6.06986 6.50676 6.52312 6.80367 7.13777 7.36710 8.73239 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.056629 B = 0.005479 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.331801 B = 5108.932027 C = 5464.280742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.070 0.930 4 C -0.140 4.140 5 C -0.098 4.098 6 C -0.131 4.131 7 H 0.116 0.884 8 C 0.504 3.496 9 O -0.599 6.599 10 N -0.703 5.703 11 C 0.230 3.770 12 C -0.547 4.547 13 H 0.061 0.939 14 C 0.028 3.972 15 N -0.930 5.930 16 Si 0.937 3.063 17 H -0.265 1.265 18 H -0.272 1.272 19 H -0.263 1.263 20 C 0.075 3.925 21 N -0.674 5.674 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.409 0.591 30 H 0.011 0.989 31 H 0.010 0.990 32 H 0.273 0.727 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.520 4.249 7.854 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.033 4.033 3 H 0.088 0.912 4 C -0.179 4.179 5 C -0.136 4.136 6 C -0.154 4.154 7 H 0.134 0.866 8 C 0.291 3.709 9 O -0.481 6.481 10 N -0.352 5.352 11 C 0.107 3.893 12 C -0.584 4.584 13 H 0.079 0.921 14 C -0.173 4.173 15 N -0.569 5.569 16 Si 0.760 3.240 17 H -0.190 1.190 18 H -0.197 1.197 19 H -0.187 1.187 20 C -0.056 4.056 21 N -0.304 5.304 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.244 0.756 30 H 0.029 0.971 31 H 0.028 0.972 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.997 5.110 7.931 20.320 hybrid contribution 1.293 -0.718 0.613 1.600 sum -16.704 4.392 8.544 19.269 Atomic orbital electron populations 1.21746 0.92548 1.02722 1.02507 1.21684 0.96457 0.97866 0.87317 0.91212 1.22280 0.93291 1.02240 1.00134 1.21348 0.96560 1.00260 0.95428 1.22121 0.89321 1.03724 1.00241 0.86645 1.21319 0.91413 0.77070 0.81082 1.90617 1.70641 1.47543 1.39269 1.46069 1.07882 1.58096 1.23137 1.19100 0.78680 0.95748 0.95815 1.21281 0.93376 1.38607 1.05185 0.92129 1.25584 1.00216 0.94668 0.96799 1.69979 1.16466 1.44111 1.26313 0.85870 0.78890 0.79827 0.79372 1.18997 1.19686 1.18713 1.21902 0.88282 1.00112 0.95278 1.60751 1.06653 1.23204 1.39773 0.91816 0.92161 0.91064 0.89933 0.90515 0.92412 0.93006 0.75555 0.97102 0.97239 0.91810 0.89392 0.91865 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.47 71.98 0.68 -1.02 16 2 C 0.08 1.28 3.03 44.94 0.14 1.42 16 3 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.14 -2.34 5.36 30.65 0.16 -2.18 16 5 C -0.10 -2.39 4.59 30.68 0.14 -2.25 16 6 C -0.13 -3.37 2.67 -11.49 -0.03 -3.40 16 7 H 0.12 2.48 8.14 -2.38 -0.02 2.46 16 8 C 0.50 18.91 7.16 87.65 0.63 19.54 16 9 O -0.60 -27.57 15.98 -3.03 -0.05 -27.62 16 10 N -0.70 -28.16 5.45 -466.80 -2.54 -30.70 16 11 C 0.23 11.44 4.50 85.63 0.38 11.82 16 12 C -0.55 -30.29 9.83 25.60 0.25 -30.04 16 13 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 14 C 0.03 1.58 5.47 84.66 0.46 2.04 16 15 N -0.93 -55.60 13.96 21.45 0.30 -55.30 16 16 Si 0.94 44.37 27.47 68.60 1.88 46.26 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.26 -12.43 6.54 99.48 0.65 -11.78 16 20 C 0.08 1.73 5.73 86.33 0.49 2.22 16 21 N -0.67 -12.45 6.50 -491.70 -3.20 -15.64 16 22 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.46 8.04 -2.39 -0.02 1.44 16 29 H 0.41 14.25 7.76 -92.70 -0.72 13.53 16 30 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 31 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 32 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.09 1.98 7.59 -2.38 -0.02 1.96 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.35 5.29 8.79 -89.69 -0.79 4.50 16 Total: -1.00 -67.16 284.28 -0.77 -67.94 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -0.48 Total: 16.92 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 3.31 Total: -1.85 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -5.44 Total: -101.64 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.05 Total: -27.62 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Total: -67.16 -0.77 -67.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306851000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.819 kcal (2) G-P(sol) polarization free energy of solvation -67.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds