Wall clock time and date at job start Mon Mar 30 2020 03:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09009 * 109.52937 * 2 1 4 4 C 1.53034 * 109.50361 * 120.09588 * 2 1 3 5 5 N 1.46847 * 109.51345 * 179.12014 * 4 2 1 6 6 C 1.46854 * 111.19790 * 298.26320 * 5 4 2 7 7 C 1.53039 * 109.52227 * 61.74204 * 6 5 4 8 8 H 1.08994 * 109.50227 * 60.75933 * 7 6 5 9 9 C 1.50693 * 109.50296 * 180.88354 * 7 6 5 10 10 O 1.21281 * 120.00341 * 120.00352 * 9 7 6 11 11 N 1.34777 * 119.99838 * 299.99812 * 9 7 6 12 12 C 1.46498 * 120.00289 * 179.97438 * 11 9 7 13 13 C 1.50697 * 109.47522 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99709 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00203 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99728 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99962 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47121 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47049 * 119.99655 * 17 15 13 20 20 H 1.48502 * 109.46979 * 239.99760 * 17 15 13 21 21 C 1.53099 * 109.48809 * 239.91035 * 2 1 3 22 22 H 1.08995 * 109.46994 * 299.90021 * 1 2 3 23 23 H 1.08995 * 109.46862 * 59.90135 * 1 2 3 24 24 H 1.08999 * 109.46201 * 179.89967 * 1 2 3 25 25 H 1.09002 * 109.46271 * 59.10734 * 4 2 1 26 26 H 1.08994 * 109.46242 * 299.13033 * 4 2 1 27 27 H 1.00899 * 111.00257 * 174.16817 * 5 4 2 28 28 H 1.08993 * 109.46229 * 181.76227 * 6 5 4 29 29 H 1.09008 * 109.45803 * 301.73838 * 6 5 4 30 30 H 0.97000 * 120.00358 * 0.02562 * 11 9 7 31 31 H 1.08999 * 109.47329 * 300.00708 * 12 11 9 32 32 H 1.09002 * 109.46937 * 59.99848 * 12 11 9 33 33 H 0.97008 * 119.99924 * 180.02562 * 16 15 13 34 34 H 1.08990 * 109.52931 * 62.49409 * 21 2 1 35 35 H 1.09001 * 109.52470 * 302.29535 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0274 0.0000 4 6 2.0410 -0.7234 1.2481 5 7 3.5093 -0.7419 1.2377 6 6 4.0229 -1.4727 0.0720 7 6 3.5709 -0.7716 -1.2110 8 1 3.9673 0.2435 -1.2300 9 6 4.0799 -1.5340 -2.4071 10 8 3.2972 -1.9910 -3.2130 11 7 5.4050 -1.7081 -2.5812 12 6 5.8999 -2.4497 -3.7436 13 6 7.4054 -2.5011 -3.7030 14 1 7.9402 -2.0282 -2.8925 15 6 8.1003 -3.1510 -4.7010 16 7 7.4491 -3.7264 -5.6881 17 14 9.9665 -3.2141 -4.6510 18 1 10.4540 -2.4956 -3.4462 19 1 10.4127 -4.6294 -4.5981 20 1 10.5165 -2.5668 -5.8691 21 6 2.0408 -0.7236 -1.2488 22 1 -0.3633 0.5123 0.8908 23 1 -0.3633 0.5153 -0.8891 24 1 -0.3632 -1.0277 -0.0018 25 1 1.6649 -1.7464 1.2544 26 1 1.6907 -0.2021 2.1389 27 1 3.8722 -1.1292 2.0958 28 1 5.1120 -1.4959 0.1089 29 1 3.6373 -2.4922 0.0838 30 1 6.0310 -1.3429 -1.9365 31 1 5.5014 -3.4641 -3.7240 32 1 5.5775 -1.9504 -4.6573 33 1 7.9379 -4.1839 -6.3901 34 1 1.7152 -0.1868 -2.1397 35 1 1.6449 -1.7390 -1.2690 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306866796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:00 Heat of formation + Delta-G solvation = -62.430554 kcal Electronic energy + Delta-G solvation = -15743.060209 eV Core-core repulsion = 13160.669378 eV Total energy + Delta-G solvation = -2582.390831 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68686 -37.69035 -34.22053 -33.27818 -32.35609 -31.56281 -27.32620 -26.51499 -24.15215 -22.96677 -21.89592 -19.82500 -19.28349 -17.23930 -16.21607 -15.52551 -15.13311 -15.07664 -14.63062 -14.20899 -13.97081 -13.69054 -13.36052 -12.86592 -12.52451 -12.07738 -11.97204 -11.84378 -11.71552 -11.08830 -10.96731 -10.88707 -10.64726 -10.52582 -10.35484 -10.29131 -9.37005 -8.95664 -8.73284 -8.56330 -7.86311 -6.16305 -4.23053 3.23753 3.30873 3.34060 3.36503 3.98346 4.23808 4.39683 4.77104 4.84314 4.87936 5.14583 5.20127 5.30395 5.42713 5.50304 5.55761 5.63687 5.72658 5.77860 5.86041 6.02521 6.05302 6.09351 6.33592 6.49615 6.88641 7.26608 7.32319 7.46036 7.52696 7.67928 7.97806 8.64869 8.79186 9.12462 9.43825 10.94009 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.054534 B = 0.005296 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.315314 B = 5285.275576 C = 5676.946798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.077 0.923 4 C 0.061 3.939 5 N -0.689 5.689 6 C 0.068 3.932 7 C -0.106 4.106 8 H 0.099 0.901 9 C 0.502 3.498 10 O -0.556 6.556 11 N -0.711 5.711 12 C 0.248 3.752 13 C -0.542 4.542 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.903 3.097 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.094 4.094 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.344 0.656 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.390 0.610 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.070 0.930 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 6.570 13.892 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.096 0.904 4 C -0.068 4.068 5 N -0.320 5.320 6 C -0.062 4.062 7 C -0.128 4.128 8 H 0.117 0.883 9 C 0.286 3.714 10 O -0.435 6.435 11 N -0.359 5.359 12 C 0.127 3.873 13 C -0.580 4.580 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.132 4.132 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.162 0.838 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.223 0.777 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.104 6.723 12.814 17.096 hybrid contribution 1.205 -0.870 0.439 1.549 sum -7.899 5.853 13.253 16.502 Atomic orbital electron populations 1.21778 0.94973 1.01859 1.01690 1.21198 0.95146 1.00284 0.94403 0.90418 1.22003 0.87706 0.98752 0.98378 1.60243 1.08105 1.58416 1.05225 1.21849 1.00138 0.94776 0.89422 1.21363 0.97521 1.00820 0.93050 0.88333 1.20408 0.83280 0.80857 0.86867 1.90648 1.55974 1.50821 1.46095 1.46497 1.05749 1.55387 1.28310 1.19107 0.93799 0.91534 0.82828 1.21271 0.90802 1.36377 1.09591 0.91837 1.24958 0.99156 0.94919 0.95007 1.69989 1.35843 1.34875 1.11637 0.86363 0.84586 0.77864 0.78116 1.19604 1.20814 1.20791 1.21421 0.93062 1.01350 0.97366 0.92764 0.92309 0.92736 0.95162 0.90955 0.83841 0.90025 0.94574 0.77688 0.95615 0.95572 0.92519 0.91117 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.20 37.16 0.34 -1.01 16 2 C -0.09 -1.01 2.88 -90.55 -0.26 -1.27 16 3 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 4 C 0.06 0.63 5.83 -3.84 -0.02 0.60 16 5 N -0.69 -7.54 6.85 -113.81 -0.78 -8.32 16 6 C 0.07 0.89 5.72 -3.83 -0.02 0.87 16 7 C -0.11 -1.60 2.69 -91.69 -0.25 -1.85 16 8 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 9 C 0.50 10.22 7.16 -10.99 -0.08 10.15 16 10 O -0.56 -13.64 15.98 5.56 0.09 -13.55 16 11 N -0.71 -15.19 5.45 -61.48 -0.33 -15.52 16 12 C 0.25 6.66 5.43 -5.20 -0.03 6.63 16 13 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 14 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 17 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.09 -1.33 3.87 -26.62 -0.10 -1.43 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.34 3.08 8.90 -39.29 -0.35 2.73 16 28 H 0.08 1.03 7.59 -51.93 -0.39 0.63 16 29 H 0.04 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.39 7.20 7.75 -40.82 -0.32 6.88 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.03 8.05 -51.93 -0.42 0.62 16 LS Contribution 287.68 15.07 4.34 4.34 Total: -1.00 -31.61 287.68 -7.47 -39.09 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.66 Total: 4.39 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.84 Total: -0.78 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.38 Total: -49.38 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.09 Total: -13.55 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.61 -7.47 -39.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306866796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.345 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds