Wall clock time and date at job start Mon Mar 30 2020 03:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.53219 * 2 1 4 4 C 1.53034 * 109.50427 * 239.89535 * 2 1 3 5 5 N 1.46847 * 109.51345 * 180.87775 * 4 2 1 6 6 C 1.46843 * 111.20124 * 61.74903 * 5 4 2 7 7 C 1.53042 * 109.52278 * 298.25596 * 6 5 4 8 8 H 1.08997 * 109.50575 * 179.15719 * 7 6 5 9 9 C 1.50700 * 109.50502 * 299.24084 * 7 6 5 10 10 O 1.21285 * 120.00199 * 119.99866 * 9 7 6 11 11 N 1.34773 * 119.99687 * 299.99761 * 9 7 6 12 12 C 1.46510 * 119.99626 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.46671 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00526 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99717 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99873 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99946 * 359.97438 * 15 13 12 18 18 H 1.48492 * 109.47157 * 90.00249 * 17 15 13 19 19 H 1.48503 * 109.46947 * 209.99946 * 17 15 13 20 20 H 1.48495 * 109.47000 * 329.99963 * 17 15 13 21 21 C 1.53123 * 109.49034 * 120.09768 * 2 1 3 22 22 H 1.09004 * 109.47174 * 180.09934 * 1 2 3 23 23 H 1.09000 * 109.47475 * 300.10544 * 1 2 3 24 24 H 1.08997 * 109.47033 * 60.10448 * 1 2 3 25 25 H 1.09002 * 109.46271 * 60.86495 * 4 2 1 26 26 H 1.08994 * 109.46242 * 300.88795 * 4 2 1 27 27 H 1.00902 * 110.99940 * 185.84650 * 5 4 2 28 28 H 1.08993 * 109.46313 * 58.27251 * 6 5 4 29 29 H 1.09000 * 109.46480 * 178.25361 * 6 5 4 30 30 H 0.96996 * 120.00444 * 0.02562 * 11 9 7 31 31 H 1.09001 * 109.47255 * 299.99545 * 12 11 9 32 32 H 1.08999 * 109.47059 * 59.99916 * 12 11 9 33 33 H 0.96994 * 119.99752 * 180.02562 * 16 15 13 34 34 H 1.09003 * 109.53012 * 57.70277 * 21 2 1 35 35 H 1.08998 * 109.52498 * 297.50595 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0409 -0.7235 -1.2479 5 7 3.5093 -0.7420 -1.2376 6 6 4.0229 -1.4728 -0.0721 7 6 3.5709 -0.7718 1.2111 8 1 3.9398 -1.3228 2.0761 9 6 4.1190 0.6318 1.2374 10 8 3.3616 1.5778 1.2857 11 7 5.4509 0.8357 1.2074 12 6 5.9837 2.2002 1.2336 13 6 7.4894 2.1523 1.1908 14 1 7.9985 1.2008 1.1487 15 6 8.2170 3.3234 1.2064 16 7 9.5310 3.2817 1.1684 17 14 7.3365 4.9692 1.2799 18 1 7.1412 5.3632 2.6982 19 1 8.1531 5.9988 0.5882 20 1 6.0154 4.8541 0.6116 21 6 2.0409 -0.7239 1.2489 22 1 -0.3634 -1.0277 0.0018 23 1 -0.3634 0.5155 0.8890 24 1 -0.3633 0.5122 -0.8909 25 1 1.6905 -0.2024 -2.1389 26 1 1.6649 -1.7465 -1.2541 27 1 3.8721 -1.1292 -2.0958 28 1 3.6376 -2.4923 -0.0839 29 1 5.1121 -1.4957 -0.1088 30 1 6.0567 0.0792 1.1685 31 1 5.6134 2.7516 0.3693 32 1 5.6615 2.6986 2.1479 33 1 10.0428 4.1054 1.1798 34 1 1.6450 -1.7393 1.2690 35 1 1.7152 -0.1871 2.1399 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306866798.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:06 Heat of formation + Delta-G solvation = -52.855574 kcal Electronic energy + Delta-G solvation = -16190.175383 eV Core-core repulsion = 13608.199754 eV Total energy + Delta-G solvation = -2581.975629 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.90856 -37.28884 -34.26439 -33.12543 -32.25880 -31.61670 -27.85017 -26.44357 -23.98915 -22.88318 -21.54302 -20.23908 -19.07415 -16.87875 -16.53538 -15.74501 -15.17751 -14.78355 -14.43505 -14.10417 -14.00699 -13.54068 -13.19260 -12.81096 -12.54036 -12.33476 -12.01254 -11.84807 -11.74807 -11.51142 -10.93455 -10.74829 -10.44920 -10.30298 -10.15535 -9.90592 -9.41755 -8.94670 -8.70800 -8.32098 -7.95992 -6.15973 -4.17044 3.30816 3.37497 3.43490 3.47777 4.09125 4.31773 4.39261 4.79366 4.87559 5.06157 5.15326 5.19949 5.38379 5.48516 5.53051 5.60727 5.72613 5.77784 5.78927 5.82905 6.00234 6.07009 6.24419 6.38838 6.75578 6.93551 7.06407 7.18907 7.37631 7.42969 7.52208 8.23526 8.65451 8.82959 9.12480 9.45676 10.96197 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.041239 B = 0.006750 C = 0.006347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.798962 B = 4147.307590 C = 4410.513007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.109 0.891 4 C 0.066 3.934 5 N -0.686 5.686 6 C 0.069 3.931 7 C -0.112 4.112 8 H 0.095 0.905 9 C 0.523 3.477 10 O -0.557 6.557 11 N -0.704 5.704 12 C 0.223 3.777 13 C -0.540 4.540 14 H 0.078 0.922 15 C 0.076 3.924 16 N -0.895 5.895 17 Si 0.877 3.123 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.260 1.260 21 C -0.091 4.091 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.023 0.977 27 H 0.343 0.657 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.393 0.607 31 H 0.024 0.976 32 H 0.017 0.983 33 H 0.267 0.733 34 H 0.057 0.943 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.004 -10.745 -2.739 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.127 0.873 4 C -0.063 4.063 5 N -0.317 5.317 6 C -0.061 4.061 7 C -0.134 4.134 8 H 0.113 0.887 9 C 0.309 3.691 10 O -0.436 6.436 11 N -0.352 5.352 12 C 0.100 3.900 13 C -0.578 4.578 14 H 0.096 0.904 15 C -0.127 4.127 16 N -0.533 5.533 17 Si 0.703 3.297 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.184 1.184 21 C -0.129 4.129 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.041 0.959 27 H 0.162 0.838 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.226 0.774 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.288 -9.318 -2.411 17.227 hybrid contribution -0.066 -0.457 -0.228 0.515 sum -14.353 -9.775 -2.639 17.565 Atomic orbital electron populations 1.21751 0.95589 1.00877 1.01703 1.21418 0.94550 1.03095 0.93255 0.87336 1.21979 0.87438 0.97954 0.98929 1.60109 1.08188 1.58440 1.04978 1.21846 1.00210 0.94040 0.89957 1.21454 0.97604 0.95618 0.98747 0.88731 1.20068 0.82791 0.90209 0.76076 1.90551 1.57709 1.44068 1.51302 1.46078 1.05727 1.10747 1.72604 1.19425 0.94486 0.79560 0.96504 1.21120 0.88634 0.95265 1.52732 0.90385 1.24797 0.94721 0.99189 0.93975 1.69886 1.05212 1.28338 1.49834 0.86816 0.80475 0.83460 0.78937 1.19966 1.20991 1.18448 1.21372 0.92742 0.99594 0.99168 0.93488 0.92521 0.92927 0.91150 0.95870 0.83839 0.94674 0.90099 0.77424 0.95761 0.96509 0.92371 0.92418 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.20 37.16 0.34 -1.24 16 2 C -0.10 -1.45 2.56 -90.54 -0.23 -1.68 16 3 H 0.11 1.96 5.75 -51.93 -0.30 1.66 16 4 C 0.07 0.81 5.83 -3.84 -0.02 0.79 16 5 N -0.69 -9.16 6.45 -113.82 -0.73 -9.89 16 6 C 0.07 0.86 5.90 -3.83 -0.02 0.84 16 7 C -0.11 -1.60 3.03 -91.68 -0.28 -1.88 16 8 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 9 C 0.52 10.20 6.50 -10.99 -0.07 10.13 16 10 O -0.56 -12.75 13.80 5.55 0.08 -12.67 16 11 N -0.70 -14.70 5.44 -61.47 -0.33 -15.03 16 12 C 0.22 5.64 4.50 -5.19 -0.02 5.62 16 13 C -0.54 -15.10 9.83 -34.44 -0.34 -15.44 16 14 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 16 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 17 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 18 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 21 C -0.09 -1.21 4.43 -26.60 -0.12 -1.33 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.34 3.84 8.90 -39.29 -0.35 3.49 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.99 7.55 -51.93 -0.39 0.59 16 30 H 0.39 7.29 7.73 -40.82 -0.32 6.97 16 31 H 0.02 0.66 7.20 -51.93 -0.37 0.29 16 32 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 LS Contribution 279.13 15.07 4.21 4.21 Total: -1.00 -32.23 279.13 -7.04 -39.27 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.50 Total: 5.11 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -0.86 Total: -2.09 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.29 Total: -51.11 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.23 -7.04 -39.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306866798.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.583 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds