Wall clock time and date at job start Mon Mar 30 2020 04:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46982 * 2 1 4 4 C 1.50703 * 109.47219 * 240.00120 * 2 1 3 5 5 H 1.08000 * 119.99892 * 240.00130 * 4 2 1 6 6 C 1.37871 * 120.00157 * 59.99648 * 4 2 1 7 7 N 1.31522 * 119.99892 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00315 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46792 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47377 * 120.00308 * 8 6 4 11 11 H 1.48504 * 109.47156 * 240.00720 * 8 6 4 12 12 N 1.46897 * 109.46854 * 119.99889 * 2 1 3 13 13 C 1.46897 * 111.00482 * 274.35133 * 12 2 1 14 14 H 1.09007 * 109.72705 * 42.75470 * 13 12 2 15 15 C 1.53343 * 109.60777 * 163.15690 * 13 12 2 16 16 C 1.53063 * 108.42699 * 187.29171 * 15 13 12 17 17 C 1.50180 * 109.89220 * 311.10260 * 16 15 13 18 18 O 1.21284 * 118.24652 * 197.60859 * 17 16 15 19 19 N 1.33349 * 123.50753 * 17.58090 * 17 16 15 20 20 C 1.45758 * 124.10915 * 357.77865 * 19 17 16 21 21 H 1.08995 * 109.30426 * 139.17537 * 20 19 17 22 22 C 1.52999 * 109.30181 * 258.76326 * 20 19 17 23 23 H 1.08998 * 109.47595 * 293.85016 * 1 2 3 24 24 H 1.09003 * 109.46958 * 53.85109 * 1 2 3 25 25 H 1.09003 * 109.47179 * 173.85000 * 1 2 3 26 26 H 0.97001 * 119.99449 * 179.97438 * 7 6 4 27 27 H 1.00902 * 110.99667 * 150.39771 * 12 2 1 28 28 H 1.08999 * 109.67024 * 67.55681 * 15 13 12 29 29 H 1.09004 * 109.70317 * 307.04576 * 15 13 12 30 30 H 1.09004 * 109.40049 * 190.97494 * 16 15 13 31 31 H 1.08997 * 109.33774 * 71.18785 * 16 15 13 32 32 H 0.97003 * 117.94850 * 177.75589 * 19 17 16 33 33 H 1.09005 * 109.47061 * 67.65693 * 22 20 19 34 34 H 1.09000 * 109.47098 * 307.65662 * 22 20 19 35 35 H 1.09000 * 109.46853 * 187.65451 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1475 -2.2862 -3.6038 10 1 1.1679 -1.5865 -4.8165 11 1 3.1474 -0.1857 -4.8160 12 7 2.0196 -0.6925 1.1994 13 6 2.0970 0.2262 2.3431 14 1 1.2078 0.8562 2.3698 15 6 2.1962 -0.5791 3.6442 16 6 2.0911 0.3914 4.8232 17 6 3.0286 1.5468 4.6191 18 8 3.3157 2.2295 5.5795 19 7 3.5626 1.8618 3.4385 20 6 3.3432 1.1030 2.2135 21 1 3.2091 1.7935 1.3810 22 6 4.5599 0.2155 1.9436 23 1 -0.3634 0.4155 0.9399 24 1 -0.3633 0.6062 -0.8299 25 1 -0.3634 -1.0218 -0.1101 26 1 0.7095 1.1617 -3.4844 27 1 2.9123 -1.1294 1.0256 28 1 3.1532 -1.0995 3.6815 29 1 1.3828 -1.3032 3.6913 30 1 2.3526 -0.1287 5.7447 31 1 1.0689 0.7629 4.8947 32 1 4.1325 2.6454 3.3919 33 1 4.6216 -0.5589 2.7082 34 1 5.4649 0.8226 1.9676 35 1 4.4601 -0.2493 0.9628 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307084706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:38 Heat of formation + Delta-G solvation = -46.911382 kcal Electronic energy + Delta-G solvation = -16382.878366 eV Core-core repulsion = 13801.160496 eV Total energy + Delta-G solvation = -2581.717869 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.31075 -37.58354 -34.84070 -33.04313 -32.11022 -30.19251 -27.90883 -25.83443 -24.91883 -23.48410 -21.74765 -19.87892 -18.47927 -16.93308 -16.48581 -16.04819 -15.40166 -15.00803 -14.43621 -13.87158 -13.81623 -13.58894 -13.21421 -12.62031 -12.32518 -11.80188 -11.61179 -11.51587 -11.19862 -11.09664 -10.99482 -10.74676 -10.46461 -10.36772 -10.22577 -9.93313 -9.57412 -8.98249 -8.85294 -8.58180 -7.43917 -6.11833 -4.18405 2.79498 3.22806 3.31647 3.34628 3.47405 4.32082 4.67786 4.88386 4.91691 5.01596 5.21051 5.33777 5.43446 5.54280 5.69942 5.81616 5.87949 5.97003 6.07737 6.25443 6.34807 6.50357 6.78929 6.92124 7.03012 7.12872 7.38803 7.52683 7.69169 7.78162 8.14937 8.24945 8.36022 8.53368 8.91426 9.48344 10.94780 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.046303 B = 0.006772 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.566614 B = 4133.466048 C = 4280.889197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.209 3.791 3 H 0.004 0.996 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.676 5.676 13 C 0.082 3.918 14 H 0.082 0.918 15 C -0.116 4.116 16 C -0.134 4.134 17 C 0.520 3.480 18 O -0.574 6.574 19 N -0.708 5.708 20 C 0.101 3.899 21 H 0.089 0.911 22 C -0.171 4.171 23 H 0.005 0.995 24 H 0.076 0.924 25 H 0.033 0.967 26 H 0.261 0.739 27 H 0.336 0.664 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.393 0.607 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 -1.185 8.266 9.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.102 3.898 3 H 0.022 0.978 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.308 5.308 13 C -0.030 4.030 14 H 0.100 0.900 15 C -0.154 4.154 16 C -0.174 4.174 17 C 0.308 3.692 18 O -0.455 6.455 19 N -0.359 5.359 20 C -0.006 4.006 21 H 0.107 0.893 22 C -0.229 4.229 23 H 0.024 0.976 24 H 0.095 0.905 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.156 0.844 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.228 0.772 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.776 -1.192 8.761 9.267 hybrid contribution 1.271 0.457 -1.365 1.921 sum 4.048 -0.735 7.396 8.463 Atomic orbital electron populations 1.21719 0.97797 1.00241 0.98415 1.19155 0.92675 0.92500 0.85464 0.97803 1.21263 1.31745 1.12604 0.90386 0.92153 1.24910 0.94936 0.94934 0.99074 1.69918 1.36465 1.22782 1.23481 0.86486 0.78658 0.79625 0.82907 1.19732 1.20950 1.21102 1.60924 1.32887 1.30841 1.06122 1.21813 0.95214 0.93157 0.92849 0.90032 1.21752 1.03351 0.97835 0.92497 1.21628 0.99910 0.95034 1.00825 1.20271 0.80817 0.85925 0.82187 1.90717 1.62286 1.53198 1.39289 1.45615 1.50543 1.30829 1.08884 1.21890 0.97418 0.95071 0.86189 0.89338 1.22309 0.97370 1.00114 1.03098 0.97599 0.90486 0.94765 0.92914 0.84397 0.91412 0.89751 0.88476 0.88345 0.77201 0.92130 0.92543 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 9.12 37.16 0.34 -2.55 16 2 C 0.21 4.82 2.43 -68.87 -0.17 4.65 16 3 H 0.00 0.11 6.70 -51.93 -0.35 -0.24 16 4 C -0.52 -13.30 8.59 -34.44 -0.30 -13.59 16 5 H 0.06 1.52 7.61 -52.49 -0.40 1.12 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.25 11.39 55.43 0.63 -23.62 16 8 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.68 -12.65 6.02 -100.81 -0.61 -13.26 16 13 C 0.08 1.28 2.15 -67.58 -0.15 1.14 16 14 H 0.08 1.40 7.17 -51.93 -0.37 1.02 16 15 C -0.12 -1.51 5.60 -26.52 -0.15 -1.66 16 16 C -0.13 -1.67 6.03 -28.10 -0.17 -1.84 16 17 C 0.52 7.89 7.71 -11.87 -0.09 7.80 16 18 O -0.57 -10.64 17.78 5.55 0.10 -10.54 16 19 N -0.71 -9.87 5.03 -54.85 -0.28 -10.15 16 20 C 0.10 1.48 3.33 -68.37 -0.23 1.25 16 21 H 0.09 1.43 7.12 -51.93 -0.37 1.06 16 22 C -0.17 -2.28 8.63 37.16 0.32 -1.96 16 23 H 0.00 0.11 7.35 -51.93 -0.38 -0.27 16 24 H 0.08 1.98 6.26 -51.93 -0.33 1.65 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.34 6.08 5.68 -39.29 -0.22 5.86 16 28 H 0.07 0.84 6.28 -51.93 -0.33 0.52 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.39 5.08 8.80 -40.82 -0.36 4.73 16 33 H 0.06 0.76 6.29 -51.93 -0.33 0.43 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.19 6.68 -51.93 -0.35 0.85 16 LS Contribution 274.92 15.07 4.14 4.14 Total: -1.00 -28.50 274.92 -6.74 -35.23 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.03 Total: 8.06 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -0.68 Total: -5.19 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.25 Total: -47.03 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.10 Total: -10.54 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.50 -6.74 -35.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307084706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.678 kcal (2) G-P(sol) polarization free energy of solvation -28.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds