Wall clock time and date at job start Mon Mar 30 2020 04:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46982 * 2 1 4 4 C 1.50703 * 109.47219 * 240.00120 * 2 1 3 5 5 H 1.08000 * 119.99892 * 240.00130 * 4 2 1 6 6 C 1.37871 * 120.00157 * 59.99648 * 4 2 1 7 7 N 1.31522 * 119.99892 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00315 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46792 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47377 * 120.00308 * 8 6 4 11 11 H 1.48504 * 109.47156 * 240.00720 * 8 6 4 12 12 N 1.46897 * 109.46854 * 119.99889 * 2 1 3 13 13 C 1.46897 * 111.00482 * 274.35133 * 12 2 1 14 14 H 1.09007 * 109.72705 * 42.75470 * 13 12 2 15 15 C 1.53343 * 109.60777 * 163.15690 * 13 12 2 16 16 C 1.53063 * 108.42699 * 187.29171 * 15 13 12 17 17 C 1.50180 * 109.89220 * 311.10260 * 16 15 13 18 18 O 1.21284 * 118.24652 * 197.60859 * 17 16 15 19 19 N 1.33349 * 123.50753 * 17.58090 * 17 16 15 20 20 C 1.45758 * 124.10915 * 357.77865 * 19 17 16 21 21 H 1.08995 * 109.30426 * 139.17537 * 20 19 17 22 22 C 1.52999 * 109.30181 * 258.76326 * 20 19 17 23 23 H 1.08998 * 109.47595 * 293.85016 * 1 2 3 24 24 H 1.09003 * 109.46958 * 53.85109 * 1 2 3 25 25 H 1.09003 * 109.47179 * 173.85000 * 1 2 3 26 26 H 0.97001 * 119.99449 * 179.97438 * 7 6 4 27 27 H 1.00902 * 110.99667 * 150.39771 * 12 2 1 28 28 H 1.08999 * 109.67024 * 67.55681 * 15 13 12 29 29 H 1.09004 * 109.70317 * 307.04576 * 15 13 12 30 30 H 1.09004 * 109.40049 * 190.97494 * 16 15 13 31 31 H 1.08997 * 109.33774 * 71.18785 * 16 15 13 32 32 H 0.97003 * 117.94850 * 177.75589 * 19 17 16 33 33 H 1.09005 * 109.47061 * 67.65693 * 22 20 19 34 34 H 1.09000 * 109.47098 * 307.65662 * 22 20 19 35 35 H 1.09000 * 109.46853 * 187.65451 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1475 -2.2862 -3.6038 10 1 1.1679 -1.5865 -4.8165 11 1 3.1474 -0.1857 -4.8160 12 7 2.0196 -0.6925 1.1994 13 6 2.0970 0.2262 2.3431 14 1 1.2078 0.8562 2.3698 15 6 2.1962 -0.5791 3.6442 16 6 2.0911 0.3914 4.8232 17 6 3.0286 1.5468 4.6191 18 8 3.3157 2.2295 5.5795 19 7 3.5626 1.8618 3.4385 20 6 3.3432 1.1030 2.2135 21 1 3.2091 1.7935 1.3810 22 6 4.5599 0.2155 1.9436 23 1 -0.3634 0.4155 0.9399 24 1 -0.3633 0.6062 -0.8299 25 1 -0.3634 -1.0218 -0.1101 26 1 0.7095 1.1617 -3.4844 27 1 2.9123 -1.1294 1.0256 28 1 3.1532 -1.0995 3.6815 29 1 1.3828 -1.3032 3.6913 30 1 2.3526 -0.1287 5.7447 31 1 1.0689 0.7629 4.8947 32 1 4.1325 2.6454 3.3919 33 1 4.6216 -0.5589 2.7082 34 1 5.4649 0.8226 1.9676 35 1 4.4601 -0.2493 0.9628 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307084706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:38 Heat of formation + Delta-G solvation = -67.278194 kcal Electronic energy + Delta-G solvation = -16383.761537 eV Core-core repulsion = 13801.160496 eV Total energy + Delta-G solvation = -2582.601041 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.53452 -38.96339 -36.46381 -34.47900 -33.55231 -31.65303 -29.40018 -27.50130 -26.56599 -24.62784 -23.06545 -21.58522 -19.76678 -18.36210 -18.11649 -17.26226 -16.89978 -16.49848 -15.92610 -15.34045 -15.08975 -14.94088 -14.51446 -14.29905 -13.56383 -13.42923 -13.01437 -12.83735 -12.80629 -12.59713 -12.46435 -12.33852 -12.17629 -11.99673 -11.80052 -11.44354 -10.82548 -10.81083 -10.56813 -10.13738 -9.02352 -8.10825 -6.23207 1.42960 1.46629 1.56400 1.60405 2.30739 2.43907 3.19447 3.43079 3.69198 3.74368 3.86132 4.11710 4.28602 4.46319 4.51876 4.69261 4.78607 4.87348 4.89370 4.97819 5.11801 5.14670 5.24248 5.27293 5.37415 5.55399 5.71838 5.78365 5.90030 6.24795 6.32787 6.51207 6.80587 7.05220 7.18358 7.47470 8.95113 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.046303 B = 0.006772 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.566614 B = 4133.466048 C = 4280.889197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.216 3.784 3 H -0.020 1.020 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.671 5.671 13 C 0.080 3.920 14 H 0.066 0.934 15 C -0.105 4.105 16 C -0.127 4.127 17 C 0.517 3.483 18 O -0.610 6.610 19 N -0.701 5.701 20 C 0.109 3.891 21 H 0.068 0.932 22 C -0.165 4.165 23 H 0.023 0.977 24 H 0.050 0.950 25 H 0.026 0.974 26 H 0.260 0.740 27 H 0.341 0.659 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.398 0.602 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.173 -2.353 8.995 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 H -0.002 1.002 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.782 3.218 9 H -0.188 1.188 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.303 5.303 13 C -0.032 4.032 14 H 0.085 0.915 15 C -0.143 4.143 16 C -0.167 4.167 17 C 0.306 3.694 18 O -0.493 6.493 19 N -0.350 5.350 20 C 0.002 3.998 21 H 0.086 0.914 22 C -0.223 4.223 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.162 0.838 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.127 0.873 32 H 0.233 0.767 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.464 -2.372 9.491 10.378 hybrid contribution 1.059 0.855 -1.566 2.075 sum 4.523 -1.517 7.925 9.251 Atomic orbital electron populations 1.21564 0.98165 0.99237 0.98277 1.18905 0.92344 0.91335 0.86676 1.00203 1.21613 1.31398 1.12559 0.91448 0.92000 1.25657 0.95247 0.95609 1.01892 1.70043 1.37648 1.24100 1.23936 0.85538 0.78013 0.78726 0.79521 1.18835 1.21107 1.20989 1.60807 1.33309 1.31013 1.05185 1.21851 0.95089 0.93208 0.93049 0.91537 1.21661 1.04345 0.97579 0.90683 1.21651 0.99748 0.93906 1.01368 1.20754 0.80700 0.86224 0.81698 1.90708 1.63636 1.54636 1.40324 1.45553 1.50222 1.30813 1.08448 1.21695 0.97695 0.94736 0.85680 0.91394 1.22243 0.97098 1.00262 1.02675 0.95762 0.93127 0.95459 0.93047 0.83821 0.90262 0.88952 0.86368 0.87297 0.76678 0.90712 0.91288 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.35 9.12 71.98 0.66 -4.69 16 2 C 0.22 9.95 2.43 44.17 0.11 10.05 16 3 H -0.02 -0.99 6.70 -2.39 -0.02 -1.01 16 4 C -0.53 -26.99 8.59 25.60 0.22 -26.77 16 5 H 0.06 3.06 7.61 -2.91 -0.02 3.04 16 6 C 0.02 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -50.77 11.39 21.45 0.24 -50.52 16 8 Si 0.96 41.54 29.54 68.60 2.03 43.57 16 9 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 N -0.67 -24.38 6.02 -472.86 -2.85 -27.22 16 13 C 0.08 2.39 2.15 45.00 0.10 2.48 16 14 H 0.07 2.21 7.17 -2.38 -0.02 2.19 16 15 C -0.10 -2.42 5.60 30.73 0.17 -2.25 16 16 C -0.13 -2.81 6.03 29.71 0.18 -2.63 16 17 C 0.52 14.75 7.71 87.72 0.68 15.43 16 18 O -0.61 -21.78 17.78 -3.04 -0.05 -21.84 16 19 N -0.70 -18.60 5.03 -446.64 -2.25 -20.84 16 20 C 0.11 3.06 3.33 45.10 0.15 3.21 16 21 H 0.07 2.22 7.12 -2.39 -0.02 2.20 16 22 C -0.16 -4.11 8.63 71.98 0.62 -3.48 16 23 H 0.02 1.00 7.35 -2.39 -0.02 0.98 16 24 H 0.05 2.64 6.26 -2.39 -0.01 2.62 16 25 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 27 H 0.34 11.86 5.68 -89.69 -0.51 11.35 16 28 H 0.08 1.68 6.28 -2.39 -0.01 1.67 16 29 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.11 2.24 8.14 -2.39 -0.02 2.23 16 32 H 0.40 9.89 8.80 -92.71 -0.82 9.07 16 33 H 0.07 1.66 6.29 -2.38 -0.02 1.64 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.89 6.68 -2.39 -0.02 1.88 16 Total: -1.00 -60.09 274.92 0.23 -59.86 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -0.22 Total: 24.39 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 3.33 Total: -7.40 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -4.85 Total: -98.59 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.84 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -60.09 0.23 -59.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307084706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.414 kcal (2) G-P(sol) polarization free energy of solvation -60.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds