Wall clock time and date at job start Mon Mar 30 2020 04:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.45683 * 2 1 4 4 N 1.46842 * 109.45385 * 240.02725 * 2 1 3 5 5 C 1.46852 * 111.19713 * 178.24586 * 4 2 1 6 6 C 1.53036 * 109.52115 * 61.74280 * 5 4 2 7 7 C 1.53122 * 109.30873 * 300.84049 * 6 5 4 8 8 C 1.53039 * 109.46006 * 119.97500 * 2 1 3 9 9 H 1.08996 * 109.50132 * 59.20940 * 8 2 1 10 10 C 1.50692 * 109.50668 * 299.12660 * 8 2 1 11 11 O 1.21282 * 120.00217 * 0.07961 * 10 8 2 12 12 N 1.34777 * 120.00138 * 180.08264 * 10 8 2 13 13 C 1.46497 * 120.00075 * 180.02562 * 12 10 8 14 14 C 1.50708 * 109.47141 * 179.97438 * 13 12 10 15 15 H 1.07991 * 119.99789 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00008 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00089 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 H 1.08996 * 109.46995 * 300.01992 * 1 2 3 23 23 H 1.08990 * 109.47082 * 60.02335 * 1 2 3 24 24 H 1.09006 * 109.46879 * 180.02562 * 1 2 3 25 25 H 1.00893 * 111.00083 * 54.14722 * 4 2 1 26 26 H 1.08996 * 109.46023 * 181.75369 * 5 4 2 27 27 H 1.08997 * 109.45745 * 301.73726 * 5 4 2 28 28 H 1.09000 * 109.50867 * 60.76364 * 6 5 4 29 29 H 1.08999 * 109.50100 * 180.88653 * 6 5 4 30 30 H 1.09005 * 109.49095 * 297.70837 * 7 6 5 31 31 H 1.09000 * 109.55675 * 177.52502 * 7 6 5 32 32 H 0.97000 * 120.00165 * 359.97438 * 12 10 8 33 33 H 1.08994 * 109.47995 * 59.99644 * 13 12 10 34 34 H 1.09000 * 109.47072 * 299.99601 * 13 12 10 35 35 H 0.96997 * 119.99848 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 7 2.0191 -0.6917 -1.1994 5 6 3.4864 -0.6778 -1.2592 6 6 4.0546 -1.4191 -0.0470 7 6 3.5710 -0.7372 1.2359 8 6 2.0399 -0.7209 1.2500 9 1 1.6652 -1.7444 1.2580 10 6 1.5557 0.0018 2.4804 11 8 0.8688 0.9952 2.3693 12 7 1.8859 -0.4557 3.7044 13 6 1.4146 0.2466 4.9006 14 6 1.9184 -0.4631 6.1310 15 1 2.5289 -1.3484 6.0317 16 6 1.6008 0.0185 7.3832 17 7 2.0408 -0.6005 8.4569 18 14 0.5455 1.5502 7.5548 19 1 1.4180 2.7515 7.5867 20 1 -0.2374 1.4735 8.8144 21 1 -0.3832 1.6436 6.3998 22 1 -0.3633 0.5141 0.8898 23 1 -0.3633 0.5134 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.6194 -0.2925 -2.0353 26 1 3.8172 -1.1701 -2.1737 27 1 3.8402 0.3531 -1.2531 28 1 3.7123 -2.4538 -0.0597 29 1 5.1437 -1.3950 -0.0834 30 1 3.9464 0.2857 1.2679 31 1 3.9374 -1.2878 2.1023 32 1 2.4350 -1.2504 3.7933 33 1 0.3248 0.2587 4.9093 34 1 1.7893 1.2702 4.8922 35 1 1.8170 -0.2619 9.3379 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307438003.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:38 Heat of formation + Delta-G solvation = -77.162641 kcal Electronic energy + Delta-G solvation = -16027.191532 eV Core-core repulsion = 13444.161869 eV Total energy + Delta-G solvation = -2583.029662 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.30170 -38.86441 -36.23515 -34.54509 -33.53713 -33.01339 -30.02458 -27.99693 -25.33527 -24.07870 -22.63328 -21.67068 -20.65902 -19.22172 -18.05596 -17.08884 -16.66482 -16.32066 -15.95837 -15.67823 -15.20096 -15.01465 -14.68716 -14.60401 -14.11855 -13.84248 -13.25653 -13.08771 -13.02339 -12.81041 -12.57014 -12.16661 -11.94813 -11.83009 -11.70769 -11.65418 -11.30464 -10.93061 -10.53087 -9.92124 -9.41322 -8.41189 -6.48249 1.31259 1.33616 1.46081 1.69644 2.26659 2.39502 2.94140 3.29274 3.61884 3.79926 3.87587 4.17801 4.24713 4.31211 4.49163 4.57013 4.71675 4.77782 4.84720 4.88247 4.96651 5.00546 5.02016 5.14308 5.18348 5.24852 5.37299 5.40350 5.58737 6.05630 6.07434 6.50443 6.52745 6.82503 7.14384 7.39194 8.73635 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.045198 B = 0.006295 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.352056 B = 4446.805852 C = 4883.592779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.112 3.888 3 H 0.025 0.975 4 N -0.684 5.684 5 C 0.053 3.947 6 C -0.110 4.110 7 C -0.114 4.114 8 C -0.091 4.091 9 H 0.112 0.888 10 C 0.504 3.496 11 O -0.587 6.587 12 N -0.704 5.704 13 C 0.232 3.768 14 C -0.547 4.547 15 H 0.059 0.941 16 C 0.027 3.973 17 N -0.931 5.931 18 Si 0.937 3.063 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.261 1.261 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.354 0.646 26 H 0.097 0.903 27 H 0.026 0.974 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.407 0.593 33 H 0.012 0.988 34 H 0.010 0.990 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.454 -1.079 -19.279 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.002 3.998 3 H 0.043 0.957 4 N -0.317 5.317 5 C -0.076 4.076 6 C -0.148 4.148 7 C -0.152 4.152 8 C -0.112 4.112 9 H 0.130 0.870 10 C 0.292 3.708 11 O -0.469 6.469 12 N -0.353 5.353 13 C 0.108 3.892 14 C -0.585 4.585 15 H 0.077 0.923 16 C -0.173 4.173 17 N -0.570 5.570 18 Si 0.761 3.239 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.185 1.185 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.173 0.827 26 H 0.116 0.884 27 H 0.044 0.956 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.242 0.758 33 H 0.030 0.970 34 H 0.028 0.972 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.950 -1.003 -18.851 18.978 hybrid contribution -0.059 1.250 0.623 1.398 sum 1.891 0.247 -18.227 18.327 Atomic orbital electron populations 1.21958 0.94092 1.02278 1.02599 1.20978 0.95593 0.93932 0.89331 0.95670 1.60287 1.07972 1.59152 1.04282 1.22045 0.87036 0.98794 0.99718 1.21586 1.00976 1.00054 0.92188 1.21620 0.91744 1.01413 1.00422 1.21331 0.98145 1.00968 0.90786 0.87007 1.21234 0.79482 0.84624 0.85507 1.90571 1.40635 1.28351 1.87329 1.46056 1.52910 1.30985 1.05369 1.19092 0.94339 0.92474 0.83274 1.21291 1.33801 1.13230 0.90176 0.92305 1.25594 0.96536 0.99965 0.95226 1.69980 1.46390 1.41858 0.98724 0.85862 0.79742 0.79905 0.78403 1.19003 1.19721 1.18539 0.92349 0.91607 0.92031 0.82693 0.88431 0.95554 0.90430 0.89391 0.92833 0.90522 0.75763 0.96975 0.97161 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.12 71.98 0.66 -3.42 16 2 C 0.11 2.92 2.20 44.94 0.10 3.02 16 3 H 0.03 0.75 8.08 -2.39 -0.02 0.73 16 4 N -0.68 -13.43 6.50 -491.67 -3.20 -16.63 16 5 C 0.05 0.88 6.55 86.32 0.57 1.45 16 6 C -0.11 -1.91 6.09 30.65 0.19 -1.73 16 7 C -0.11 -2.67 5.16 30.68 0.16 -2.51 16 8 C -0.09 -2.53 2.21 -11.49 -0.03 -2.55 16 9 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 10 C 0.50 19.11 6.87 87.65 0.60 19.71 16 11 O -0.59 -26.23 13.71 -3.04 -0.04 -26.27 16 12 N -0.70 -28.70 5.45 -466.80 -2.54 -31.25 16 13 C 0.23 11.53 4.50 85.64 0.39 11.91 16 14 C -0.55 -30.47 9.83 25.60 0.25 -30.22 16 15 H 0.06 3.44 7.84 -2.92 -0.02 3.41 16 16 C 0.03 1.54 5.47 84.65 0.46 2.01 16 17 N -0.93 -55.81 13.96 21.45 0.30 -55.52 16 18 Si 0.94 44.36 27.47 68.60 1.88 46.24 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.26 -12.28 6.54 99.48 0.65 -11.63 16 22 H 0.06 1.98 5.59 -2.39 -0.01 1.97 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.35 5.70 8.79 -89.70 -0.79 4.91 16 26 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.03 0.46 8.14 -2.39 -0.02 0.45 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.08 1.75 7.65 -2.39 -0.02 1.73 16 32 H 0.41 14.72 7.79 -92.71 -0.72 14.00 16 33 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 34 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -65.99 279.81 -0.74 -66.73 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -0.48 Total: 19.03 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 3.34 Total: -2.34 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -5.44 Total: -103.39 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.04 Total: -26.27 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Total: -65.99 -0.74 -66.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307438003.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.436 kcal (2) G-P(sol) polarization free energy of solvation -65.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds