Wall clock time and date at job start Mon Mar 30 2020 03:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47083 * 2 1 4 4 N 1.46495 * 109.47154 * 175.47046 * 3 2 1 5 5 C 1.36933 * 120.00317 * 274.73445 * 4 3 2 6 6 H 1.08003 * 119.99450 * 327.69391 * 5 4 3 7 7 C 1.38815 * 120.00245 * 147.69970 * 5 4 3 8 8 N 1.31620 * 119.99595 * 157.89289 * 7 5 4 9 9 Si 1.86799 * 120.00082 * 337.89586 * 7 5 4 10 10 H 1.48496 * 109.47220 * 95.25315 * 9 7 5 11 11 H 1.48500 * 109.47028 * 215.25524 * 9 7 5 12 12 H 1.48504 * 109.46914 * 335.25292 * 9 7 5 13 13 C 1.46499 * 119.99885 * 94.73375 * 4 3 2 14 14 C 1.52996 * 109.47348 * 91.63824 * 13 4 3 15 15 H 1.08997 * 110.21576 * 65.05526 * 14 13 4 16 16 C 1.54485 * 110.24614 * 187.07032 * 14 13 4 17 17 C 1.54629 * 101.76395 * 144.41605 * 16 14 13 18 18 C 1.51289 * 104.19572 * 335.20524 * 17 16 14 19 19 O 1.21279 * 124.93989 * 196.27239 * 18 17 16 20 20 N 1.34421 * 110.11391 * 16.24862 * 18 17 16 21 21 H 1.09002 * 109.47172 * 64.72697 * 1 2 3 22 22 H 1.08999 * 109.46710 * 184.72633 * 1 2 3 23 23 H 1.09000 * 109.47199 * 304.71931 * 1 2 3 24 24 H 1.09000 * 109.47481 * 239.99714 * 2 1 3 25 25 H 1.09005 * 109.47204 * 119.99653 * 2 1 3 26 26 H 1.08998 * 109.46680 * 295.47425 * 3 2 1 27 27 H 1.09003 * 109.46775 * 55.46912 * 3 2 1 28 28 H 0.97003 * 119.99950 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47043 * 211.64306 * 13 4 3 30 30 H 1.08999 * 109.47230 * 331.63561 * 13 4 3 31 31 H 1.08996 * 110.97060 * 262.53583 * 16 14 13 32 32 H 1.09002 * 110.96762 * 26.29729 * 16 14 13 33 33 H 1.08996 * 110.48873 * 216.52384 * 17 16 14 34 34 H 1.08998 * 110.59918 * 93.93146 * 17 16 14 35 35 H 0.96995 * 124.34440 * 180.43215 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5009 1.4440 0.1091 5 6 4.0956 1.3780 1.3407 6 1 3.6154 1.8281 2.1970 7 6 5.3157 0.7326 1.4887 8 7 6.0923 1.0201 2.5117 9 14 5.8552 -0.5436 0.2359 10 1 6.7261 0.0984 -0.7812 11 1 6.6089 -1.6234 0.9224 12 1 4.6594 -1.1205 -0.4294 13 6 4.3256 1.5161 -1.0996 14 6 4.6393 2.9797 -1.4164 15 1 5.2566 3.4116 -0.6287 16 6 5.3560 3.0896 -2.7805 17 6 4.7815 4.4148 -3.3327 18 6 3.4501 4.5634 -2.6297 19 8 2.5610 5.3116 -2.9768 20 7 3.3959 3.7450 -1.5646 21 1 -0.3633 0.4387 -0.9293 22 1 -0.3633 -1.0242 0.0847 23 1 -0.3633 0.5853 0.8447 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.7443 1.9324 -0.9278 27 1 1.6118 1.9793 0.8466 28 1 6.9447 0.5688 2.6154 29 1 5.2560 0.9719 -0.9376 30 1 3.7852 1.0713 -1.9352 31 1 6.4360 3.1573 -2.6494 32 1 5.0948 2.2518 -3.4270 33 1 4.6381 4.3484 -4.4111 34 1 5.4379 5.2494 -3.0866 35 1 2.6328 3.6699 -0.9706 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308479355.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:14 Heat of formation + Delta-G solvation = -21.021553 kcal Electronic energy + Delta-G solvation = -16457.784132 eV Core-core repulsion = 13877.188930 eV Total energy + Delta-G solvation = -2580.595202 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.96015 -37.05884 -35.49843 -32.97416 -31.37650 -30.93044 -28.69735 -25.93604 -24.37975 -22.16721 -21.07496 -20.19566 -19.97201 -17.14786 -16.64252 -16.23719 -15.25861 -14.62707 -14.51175 -14.10126 -13.41644 -13.23943 -13.04055 -12.90695 -12.57781 -12.40280 -12.31132 -11.63784 -11.45817 -11.13518 -10.91013 -10.81440 -10.73198 -10.47550 -9.98907 -9.93636 -9.59360 -9.46500 -8.76485 -8.54974 -7.04368 -6.07361 -3.46214 2.93002 3.17757 3.39181 3.41465 3.84689 4.40335 4.56898 4.76390 4.91452 5.12362 5.21642 5.45944 5.55095 5.62628 5.73869 5.77459 5.88623 5.91303 5.98991 6.02751 6.12060 6.26274 6.33313 6.42318 6.48707 6.59949 6.79400 6.98195 7.24220 7.49537 7.91070 8.25762 8.63837 8.85467 9.60637 9.97179 11.08378 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.020231 B = 0.011595 C = 0.008583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.700718 B = 2414.298130 C = 3261.337250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.146 3.854 4 N -0.606 5.606 5 C -0.266 4.266 6 H 0.083 0.917 7 C 0.032 3.968 8 N -0.899 5.899 9 Si 0.878 3.122 10 H -0.284 1.284 11 H -0.303 1.303 12 H -0.270 1.270 13 C 0.131 3.869 14 C 0.109 3.891 15 H 0.090 0.910 16 C -0.132 4.132 17 C -0.154 4.154 18 C 0.512 3.488 19 O -0.558 6.558 20 N -0.707 5.707 21 H 0.046 0.954 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.264 0.736 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 0.709 -9.243 9.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.020 3.980 4 N -0.328 5.328 5 C -0.394 4.394 6 H 0.101 0.899 7 C -0.168 4.168 8 N -0.541 5.541 9 Si 0.709 3.291 10 H -0.213 1.213 11 H -0.231 1.231 12 H -0.195 1.195 13 C 0.004 3.996 14 C 0.001 3.999 15 H 0.108 0.892 16 C -0.170 4.170 17 C -0.194 4.194 18 C 0.298 3.702 19 O -0.437 6.437 20 N -0.362 5.362 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.796 1.060 -9.352 9.818 hybrid contribution 0.244 -0.990 -0.266 1.054 sum -2.552 0.070 -9.618 9.951 Atomic orbital electron populations 1.21736 0.97110 1.00700 1.01011 1.22110 0.93940 1.00505 1.01956 1.21050 0.84123 0.94102 0.98742 1.44223 1.00245 1.85764 1.02559 1.18818 1.03709 1.30644 0.86266 0.89910 1.25345 0.97136 0.97994 0.96369 1.69853 1.10613 1.42066 1.31548 0.86956 0.78214 0.82953 0.80949 1.21311 1.23131 1.19533 1.21532 0.96201 0.92328 0.89501 1.22475 0.84906 0.95844 0.96655 0.89228 1.22694 1.01091 0.96843 0.96409 1.22304 0.95864 0.99688 1.01567 1.20902 0.88839 0.79231 0.81201 1.90698 1.43542 1.40289 1.69211 1.46403 1.18984 1.41590 1.29181 0.93535 0.93646 0.92972 0.93360 0.91450 0.94084 0.93103 0.92650 0.91969 0.93356 0.89420 0.90317 0.88694 0.88196 0.74855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.15 -2.54 6.24 -26.73 -0.17 -2.71 16 3 C 0.15 2.68 4.65 -4.04 -0.02 2.66 16 4 N -0.61 -13.00 2.01 -173.24 -0.35 -13.35 16 5 C -0.27 -6.86 9.98 -15.06 -0.15 -7.02 16 6 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 7 C 0.03 0.86 5.34 -17.43 -0.09 0.76 16 8 N -0.90 -26.07 13.97 55.49 0.78 -25.30 16 9 Si 0.88 20.79 24.80 -169.99 -4.22 16.58 16 10 H -0.28 -6.36 6.69 56.52 0.38 -5.98 16 11 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.27 -6.30 7.10 56.52 0.40 -5.90 16 13 C 0.13 2.54 4.24 -4.04 -0.02 2.52 16 14 C 0.11 1.84 3.81 -67.01 -0.26 1.59 16 15 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 16 C -0.13 -1.73 6.69 -25.10 -0.17 -1.90 16 17 C -0.15 -1.97 6.86 -26.74 -0.18 -2.15 16 18 C 0.51 8.65 8.43 -10.86 -0.09 8.55 16 19 O -0.56 -11.30 18.03 5.56 0.10 -11.20 16 20 N -0.71 -11.95 5.48 -52.76 -0.29 -12.24 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.04 0.69 6.70 -51.93 -0.35 0.34 16 27 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.06 1.32 2.47 -51.93 -0.13 1.19 16 30 H 0.05 0.86 7.96 -51.93 -0.41 0.45 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.96 7.84 -51.93 -0.41 0.55 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.41 7.15 6.67 -40.82 -0.27 6.88 16 LS Contribution 280.71 15.07 4.23 4.23 Total: -1.00 -29.75 280.71 -5.90 -35.65 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.37 Total: 5.04 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -0.78 Total: 0.59 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.14 Total: -50.89 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.10 Total: -11.20 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.22 Total: 16.58 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.75 -5.90 -35.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308479355.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.628 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds