Wall clock time and date at job start Mon Mar 30 2020 03:02:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53008 * 109.47083 * 2 1
4 4 N 1.46495 * 109.47154 * 175.47046 * 3 2 1
5 5 C 1.36933 * 120.00317 * 274.73445 * 4 3 2
6 6 H 1.08003 * 119.99450 * 327.69391 * 5 4 3
7 7 C 1.38815 * 120.00245 * 147.69970 * 5 4 3
8 8 N 1.31620 * 119.99595 * 157.89289 * 7 5 4
9 9 Si 1.86799 * 120.00082 * 337.89586 * 7 5 4
10 10 H 1.48496 * 109.47220 * 95.25315 * 9 7 5
11 11 H 1.48500 * 109.47028 * 215.25524 * 9 7 5
12 12 H 1.48504 * 109.46914 * 335.25292 * 9 7 5
13 13 C 1.46499 * 119.99885 * 94.73375 * 4 3 2
14 14 C 1.52996 * 109.47348 * 91.63824 * 13 4 3
15 15 H 1.08997 * 110.21576 * 65.05526 * 14 13 4
16 16 C 1.54485 * 110.24614 * 187.07032 * 14 13 4
17 17 C 1.54629 * 101.76395 * 144.41605 * 16 14 13
18 18 C 1.51289 * 104.19572 * 335.20524 * 17 16 14
19 19 O 1.21279 * 124.93989 * 196.27239 * 18 17 16
20 20 N 1.34421 * 110.11391 * 16.24862 * 18 17 16
21 21 H 1.09002 * 109.47172 * 64.72697 * 1 2 3
22 22 H 1.08999 * 109.46710 * 184.72633 * 1 2 3
23 23 H 1.09000 * 109.47199 * 304.71931 * 1 2 3
24 24 H 1.09000 * 109.47481 * 239.99714 * 2 1 3
25 25 H 1.09005 * 109.47204 * 119.99653 * 2 1 3
26 26 H 1.08998 * 109.46680 * 295.47425 * 3 2 1
27 27 H 1.09003 * 109.46775 * 55.46912 * 3 2 1
28 28 H 0.97003 * 119.99950 * 179.97438 * 8 7 5
29 29 H 1.09004 * 109.47043 * 211.64306 * 13 4 3
30 30 H 1.08999 * 109.47230 * 331.63561 * 13 4 3
31 31 H 1.08996 * 110.97060 * 262.53583 * 16 14 13
32 32 H 1.09002 * 110.96762 * 26.29729 * 16 14 13
33 33 H 1.08996 * 110.48873 * 216.52384 * 17 16 14
34 34 H 1.08998 * 110.59918 * 93.93146 * 17 16 14
35 35 H 0.96995 * 124.34440 * 180.43215 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 3.5009 1.4440 0.1091
5 6 4.0956 1.3780 1.3407
6 1 3.6154 1.8281 2.1970
7 6 5.3157 0.7326 1.4887
8 7 6.0923 1.0201 2.5117
9 14 5.8552 -0.5436 0.2359
10 1 6.7261 0.0984 -0.7812
11 1 6.6089 -1.6234 0.9224
12 1 4.6594 -1.1205 -0.4294
13 6 4.3256 1.5161 -1.0996
14 6 4.6393 2.9797 -1.4164
15 1 5.2566 3.4116 -0.6287
16 6 5.3560 3.0896 -2.7805
17 6 4.7815 4.4148 -3.3327
18 6 3.4501 4.5634 -2.6297
19 8 2.5610 5.3116 -2.9768
20 7 3.3959 3.7450 -1.5646
21 1 -0.3633 0.4387 -0.9293
22 1 -0.3633 -1.0242 0.0847
23 1 -0.3633 0.5853 0.8447
24 1 1.8934 -0.5139 -0.8899
25 1 1.8933 -0.5138 0.8901
26 1 1.7443 1.9324 -0.9278
27 1 1.6118 1.9793 0.8466
28 1 6.9447 0.5688 2.6154
29 1 5.2560 0.9719 -0.9376
30 1 3.7852 1.0713 -1.9352
31 1 6.4360 3.1573 -2.6494
32 1 5.0948 2.2518 -3.4270
33 1 4.6381 4.3484 -4.4111
34 1 5.4379 5.2494 -3.0866
35 1 2.6328 3.6699 -0.9706
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308479355.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:14
Heat of formation + Delta-G solvation = -21.021553 kcal
Electronic energy + Delta-G solvation = -16457.784132 eV
Core-core repulsion = 13877.188930 eV
Total energy + Delta-G solvation = -2580.595202 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.96015 -37.05884 -35.49843 -32.97416 -31.37650 -30.93044 -28.69735 -25.93604
-24.37975 -22.16721 -21.07496 -20.19566 -19.97201 -17.14786 -16.64252 -16.23719
-15.25861 -14.62707 -14.51175 -14.10126 -13.41644 -13.23943 -13.04055 -12.90695
-12.57781 -12.40280 -12.31132 -11.63784 -11.45817 -11.13518 -10.91013 -10.81440
-10.73198 -10.47550 -9.98907 -9.93636 -9.59360 -9.46500 -8.76485 -8.54974
-7.04368 -6.07361 -3.46214 2.93002 3.17757 3.39181 3.41465 3.84689
4.40335 4.56898 4.76390 4.91452 5.12362 5.21642 5.45944 5.55095
5.62628 5.73869 5.77459 5.88623 5.91303 5.98991 6.02751 6.12060
6.26274 6.33313 6.42318 6.48707 6.59949 6.79400 6.98195 7.24220
7.49537 7.91070 8.25762 8.63837 8.85467 9.60637 9.97179 11.08378
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.020231 B = 0.011595 C = 0.008583
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1383.700718 B = 2414.298130 C = 3261.337250
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.145 4.145
3 C 0.146 3.854
4 N -0.606 5.606
5 C -0.266 4.266
6 H 0.083 0.917
7 C 0.032 3.968
8 N -0.899 5.899
9 Si 0.878 3.122
10 H -0.284 1.284
11 H -0.303 1.303
12 H -0.270 1.270
13 C 0.131 3.869
14 C 0.109 3.891
15 H 0.090 0.910
16 C -0.132 4.132
17 C -0.154 4.154
18 C 0.512 3.488
19 O -0.558 6.558
20 N -0.707 5.707
21 H 0.046 0.954
22 H 0.044 0.956
23 H 0.051 0.949
24 H 0.048 0.952
25 H 0.067 0.933
26 H 0.041 0.959
27 H 0.051 0.949
28 H 0.264 0.736
29 H 0.063 0.937
30 H 0.048 0.952
31 H 0.087 0.913
32 H 0.078 0.922
33 H 0.095 0.905
34 H 0.100 0.900
35 H 0.411 0.589
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.579 0.709 -9.243 9.623
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.185 4.185
3 C 0.020 3.980
4 N -0.328 5.328
5 C -0.394 4.394
6 H 0.101 0.899
7 C -0.168 4.168
8 N -0.541 5.541
9 Si 0.709 3.291
10 H -0.213 1.213
11 H -0.231 1.231
12 H -0.195 1.195
13 C 0.004 3.996
14 C 0.001 3.999
15 H 0.108 0.892
16 C -0.170 4.170
17 C -0.194 4.194
18 C 0.298 3.702
19 O -0.437 6.437
20 N -0.362 5.362
21 H 0.065 0.935
22 H 0.064 0.936
23 H 0.070 0.930
24 H 0.066 0.934
25 H 0.086 0.914
26 H 0.059 0.941
27 H 0.069 0.931
28 H 0.073 0.927
29 H 0.080 0.920
30 H 0.066 0.934
31 H 0.106 0.894
32 H 0.097 0.903
33 H 0.113 0.887
34 H 0.118 0.882
35 H 0.251 0.749
Dipole moment (debyes) X Y Z Total
from point charges -2.796 1.060 -9.352 9.818
hybrid contribution 0.244 -0.990 -0.266 1.054
sum -2.552 0.070 -9.618 9.951
Atomic orbital electron populations
1.21736 0.97110 1.00700 1.01011 1.22110 0.93940 1.00505 1.01956
1.21050 0.84123 0.94102 0.98742 1.44223 1.00245 1.85764 1.02559
1.18818 1.03709 1.30644 0.86266 0.89910 1.25345 0.97136 0.97994
0.96369 1.69853 1.10613 1.42066 1.31548 0.86956 0.78214 0.82953
0.80949 1.21311 1.23131 1.19533 1.21532 0.96201 0.92328 0.89501
1.22475 0.84906 0.95844 0.96655 0.89228 1.22694 1.01091 0.96843
0.96409 1.22304 0.95864 0.99688 1.01567 1.20902 0.88839 0.79231
0.81201 1.90698 1.43542 1.40289 1.69211 1.46403 1.18984 1.41590
1.29181 0.93535 0.93646 0.92972 0.93360 0.91450 0.94084 0.93103
0.92650 0.91969 0.93356 0.89420 0.90317 0.88694 0.88196 0.74855
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16
2 C -0.15 -2.54 6.24 -26.73 -0.17 -2.71 16
3 C 0.15 2.68 4.65 -4.04 -0.02 2.66 16
4 N -0.61 -13.00 2.01 -173.24 -0.35 -13.35 16
5 C -0.27 -6.86 9.98 -15.06 -0.15 -7.02 16
6 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16
7 C 0.03 0.86 5.34 -17.43 -0.09 0.76 16
8 N -0.90 -26.07 13.97 55.49 0.78 -25.30 16
9 Si 0.88 20.79 24.80 -169.99 -4.22 16.58 16
10 H -0.28 -6.36 6.69 56.52 0.38 -5.98 16
11 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16
12 H -0.27 -6.30 7.10 56.52 0.40 -5.90 16
13 C 0.13 2.54 4.24 -4.04 -0.02 2.52 16
14 C 0.11 1.84 3.81 -67.01 -0.26 1.59 16
15 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16
16 C -0.13 -1.73 6.69 -25.10 -0.17 -1.90 16
17 C -0.15 -1.97 6.86 -26.74 -0.18 -2.15 16
18 C 0.51 8.65 8.43 -10.86 -0.09 8.55 16
19 O -0.56 -11.30 18.03 5.56 0.10 -11.20 16
20 N -0.71 -11.95 5.48 -52.76 -0.29 -12.24 16
21 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16
22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16
25 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16
26 H 0.04 0.69 6.70 -51.93 -0.35 0.34 16
27 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16
28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
29 H 0.06 1.32 2.47 -51.93 -0.13 1.19 16
30 H 0.05 0.86 7.96 -51.93 -0.41 0.45 16
31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
32 H 0.08 0.96 7.84 -51.93 -0.41 0.55 16
33 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16
34 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16
35 H 0.41 7.15 6.67 -40.82 -0.27 6.88 16
LS Contribution 280.71 15.07 4.23 4.23
Total: -1.00 -29.75 280.71 -5.90 -35.65
By element:
Atomic # 1 Polarization: 10.42 SS G_CDS: -5.37 Total: 5.04 kcal
Atomic # 6 Polarization: 1.37 SS G_CDS: -0.78 Total: 0.59 kcal
Atomic # 7 Polarization: -51.02 SS G_CDS: 0.14 Total: -50.89 kcal
Atomic # 8 Polarization: -11.30 SS G_CDS: 0.10 Total: -11.20 kcal
Atomic # 14 Polarization: 20.79 SS G_CDS: -4.22 Total: 16.58 kcal
Total LS contribution 4.23 Total: 4.23 kcal
Total: -29.75 -5.90 -35.65 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308479355.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.628 kcal
(2) G-P(sol) polarization free energy of solvation -29.751 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.123 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.898 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.649 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.022 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds