Wall clock time and date at job start Mon Mar 30 2020 03:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47083 * 2 1 4 4 N 1.46495 * 109.47154 * 175.47046 * 3 2 1 5 5 C 1.36933 * 120.00317 * 274.73445 * 4 3 2 6 6 H 1.08003 * 119.99450 * 327.69391 * 5 4 3 7 7 C 1.38815 * 120.00245 * 147.69970 * 5 4 3 8 8 N 1.31620 * 119.99595 * 157.89289 * 7 5 4 9 9 Si 1.86799 * 120.00082 * 337.89586 * 7 5 4 10 10 H 1.48496 * 109.47220 * 95.25315 * 9 7 5 11 11 H 1.48500 * 109.47028 * 215.25524 * 9 7 5 12 12 H 1.48504 * 109.46914 * 335.25292 * 9 7 5 13 13 C 1.46499 * 119.99885 * 94.73375 * 4 3 2 14 14 C 1.52996 * 109.47348 * 91.63824 * 13 4 3 15 15 H 1.08997 * 110.21576 * 65.05526 * 14 13 4 16 16 C 1.54485 * 110.24614 * 187.07032 * 14 13 4 17 17 C 1.54629 * 101.76395 * 144.41605 * 16 14 13 18 18 C 1.51289 * 104.19572 * 335.20524 * 17 16 14 19 19 O 1.21279 * 124.93989 * 196.27239 * 18 17 16 20 20 N 1.34421 * 110.11391 * 16.24862 * 18 17 16 21 21 H 1.09002 * 109.47172 * 64.72697 * 1 2 3 22 22 H 1.08999 * 109.46710 * 184.72633 * 1 2 3 23 23 H 1.09000 * 109.47199 * 304.71931 * 1 2 3 24 24 H 1.09000 * 109.47481 * 239.99714 * 2 1 3 25 25 H 1.09005 * 109.47204 * 119.99653 * 2 1 3 26 26 H 1.08998 * 109.46680 * 295.47425 * 3 2 1 27 27 H 1.09003 * 109.46775 * 55.46912 * 3 2 1 28 28 H 0.97003 * 119.99950 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47043 * 211.64306 * 13 4 3 30 30 H 1.08999 * 109.47230 * 331.63561 * 13 4 3 31 31 H 1.08996 * 110.97060 * 262.53583 * 16 14 13 32 32 H 1.09002 * 110.96762 * 26.29729 * 16 14 13 33 33 H 1.08996 * 110.48873 * 216.52384 * 17 16 14 34 34 H 1.08998 * 110.59918 * 93.93146 * 17 16 14 35 35 H 0.96995 * 124.34440 * 180.43215 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5009 1.4440 0.1091 5 6 4.0956 1.3780 1.3407 6 1 3.6154 1.8281 2.1970 7 6 5.3157 0.7326 1.4887 8 7 6.0923 1.0201 2.5117 9 14 5.8552 -0.5436 0.2359 10 1 6.7261 0.0984 -0.7812 11 1 6.6089 -1.6234 0.9224 12 1 4.6594 -1.1205 -0.4294 13 6 4.3256 1.5161 -1.0996 14 6 4.6393 2.9797 -1.4164 15 1 5.2566 3.4116 -0.6287 16 6 5.3560 3.0896 -2.7805 17 6 4.7815 4.4148 -3.3327 18 6 3.4501 4.5634 -2.6297 19 8 2.5610 5.3116 -2.9768 20 7 3.3959 3.7450 -1.5646 21 1 -0.3633 0.4387 -0.9293 22 1 -0.3633 -1.0242 0.0847 23 1 -0.3633 0.5853 0.8447 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.7443 1.9324 -0.9278 27 1 1.6118 1.9793 0.8466 28 1 6.9447 0.5688 2.6154 29 1 5.2560 0.9719 -0.9376 30 1 3.7852 1.0713 -1.9352 31 1 6.4360 3.1573 -2.6494 32 1 5.0948 2.2518 -3.4270 33 1 4.6381 4.3484 -4.4111 34 1 5.4379 5.2494 -3.0866 35 1 2.6328 3.6699 -0.9706 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308479355.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:14 Heat of formation + Delta-G solvation = -41.495762 kcal Electronic energy + Delta-G solvation = -16458.671961 eV Core-core repulsion = 13877.188930 eV Total energy + Delta-G solvation = -2581.483030 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.28197 -38.61771 -36.96005 -34.61446 -33.15341 -32.13587 -30.13631 -27.58493 -25.84261 -23.69924 -22.33513 -21.72970 -21.29196 -18.91473 -18.08890 -17.73183 -16.90900 -16.18822 -15.90663 -15.55342 -14.85102 -14.71084 -14.59949 -14.34414 -14.06599 -13.94208 -13.44341 -13.08849 -12.82935 -12.70345 -12.45282 -12.19334 -12.03100 -11.89780 -11.76608 -11.41138 -11.37018 -10.89727 -10.60266 -10.07447 -8.85455 -8.15251 -5.50412 1.29753 1.46473 1.54788 1.62797 2.42978 2.50963 3.04600 3.26996 3.56719 3.72756 3.98857 4.18141 4.28588 4.32471 4.37697 4.52878 4.61616 4.65328 4.71284 4.87019 4.89916 4.95022 5.10024 5.12862 5.22257 5.28129 5.37871 5.53923 5.87794 5.93565 6.17885 6.18587 6.96771 7.28933 7.63973 8.02636 9.04822 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.020231 B = 0.011595 C = 0.008583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.700718 B = 2414.298130 C = 3261.337250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.145 3.855 4 N -0.616 5.616 5 C -0.250 4.250 6 H 0.042 0.958 7 C -0.024 4.024 8 N -0.951 5.951 9 Si 0.942 3.058 10 H -0.258 1.258 11 H -0.319 1.319 12 H -0.262 1.262 13 C 0.126 3.874 14 C 0.111 3.889 15 H 0.063 0.937 16 C -0.121 4.121 17 C -0.141 4.141 18 C 0.506 3.494 19 O -0.596 6.596 20 N -0.710 5.710 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.262 0.738 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.616 0.275 -12.182 12.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.180 4.180 3 C 0.020 3.980 4 N -0.338 5.338 5 C -0.379 4.379 6 H 0.059 0.941 7 C -0.219 4.219 8 N -0.596 5.596 9 Si 0.772 3.228 10 H -0.184 1.184 11 H -0.249 1.249 12 H -0.187 1.187 13 C 0.001 3.999 14 C 0.004 3.996 15 H 0.082 0.918 16 C -0.160 4.160 17 C -0.181 4.181 18 C 0.294 3.706 19 O -0.478 6.478 20 N -0.363 5.363 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.845 0.629 -12.335 12.674 hybrid contribution 0.151 -0.780 0.717 1.070 sum -2.694 -0.151 -11.618 11.927 Atomic orbital electron populations 1.21668 0.94290 1.01865 1.02002 1.22012 0.96438 0.99029 1.00546 1.21134 0.82371 0.95043 0.99434 1.44286 1.01648 1.86012 1.01849 1.18621 1.03218 1.28987 0.87105 0.94069 1.25919 0.97495 0.99886 0.98648 1.69992 1.11378 1.43767 1.34435 0.85913 0.78210 0.79693 0.79026 1.18447 1.24862 1.18684 1.21643 0.95416 0.93890 0.88971 1.22332 0.84864 0.93848 0.98601 0.91848 1.22736 1.01814 0.97684 0.93742 1.22334 0.93178 1.00093 1.02486 1.21613 0.89878 0.78145 0.80939 1.90679 1.45302 1.41709 1.70136 1.46497 1.18764 1.41770 1.29219 0.91874 0.92304 0.92799 0.93196 0.94358 0.91886 0.94037 0.92935 0.93371 0.90995 0.87412 0.88443 0.86145 0.86437 0.75695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.14 -4.73 6.24 30.60 0.19 -4.54 16 3 C 0.15 5.22 4.65 86.38 0.40 5.62 16 4 N -0.62 -26.11 2.01 -702.00 -1.41 -27.52 16 5 C -0.25 -13.23 9.98 84.03 0.84 -12.39 16 6 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 7 C -0.02 -1.30 5.34 84.86 0.45 -0.84 16 8 N -0.95 -56.98 13.97 21.65 0.30 -56.67 16 9 Si 0.94 42.82 24.80 68.60 1.70 44.52 16 10 H -0.26 -10.49 6.69 99.48 0.67 -9.83 16 11 H -0.32 -15.26 7.11 99.48 0.71 -14.55 16 12 H -0.26 -11.43 7.10 99.48 0.71 -10.73 16 13 C 0.13 4.60 4.24 86.38 0.37 4.97 16 14 C 0.11 3.53 3.81 45.45 0.17 3.70 16 15 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 16 C -0.12 -2.67 6.69 31.65 0.21 -2.46 16 17 C -0.14 -3.04 6.86 30.59 0.21 -2.83 16 18 C 0.51 15.96 8.43 87.90 0.74 16.70 16 19 O -0.60 -23.32 18.03 -3.03 -0.05 -23.37 16 20 N -0.71 -22.89 5.48 -439.44 -2.41 -25.30 16 21 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.06 2.00 6.70 -2.39 -0.02 1.98 16 27 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 28 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.05 1.92 2.47 -2.39 -0.01 1.91 16 30 H 0.07 2.29 7.96 -2.39 -0.02 2.27 16 31 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.10 1.84 7.84 -2.39 -0.02 1.82 16 33 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.40 13.76 6.67 -92.71 -0.62 13.14 16 Total: -1.00 -66.24 280.71 2.84 -63.40 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.41 Total: 19.95 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 4.30 Total: 5.00 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -3.52 Total: -109.50 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.70 Total: 44.52 kcal Total: -66.24 2.84 -63.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308479355.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.901 kcal (2) G-P(sol) polarization free energy of solvation -66.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds