Wall clock time and date at job start Mon Mar 30 2020 03:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46930 * 2 1 4 4 N 1.46896 * 109.47355 * 120.00221 * 2 1 3 5 5 C 1.46898 * 111.00268 * 155.00310 * 4 2 1 6 6 C 1.50700 * 109.47341 * 180.02562 * 5 4 2 7 7 O 1.21288 * 120.00033 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99635 * 179.97438 * 6 5 4 9 9 C 1.37102 * 119.99560 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00007 * 225.27862 * 9 8 6 11 11 C 1.38951 * 119.99557 * 45.28275 * 9 8 6 12 12 N 1.31412 * 119.99433 * 197.85633 * 11 9 8 13 13 Si 1.86797 * 120.00273 * 17.85760 * 11 9 8 14 14 H 1.48504 * 109.46910 * 266.07011 * 13 11 9 15 15 H 1.48497 * 109.47315 * 26.07036 * 13 11 9 16 16 H 1.48502 * 109.47333 * 146.07539 * 13 11 9 17 17 C 1.46497 * 120.00461 * 359.97438 * 8 6 5 18 18 C 1.52997 * 117.50214 * 183.22309 * 17 8 6 19 19 C 1.52991 * 117.50147 * 114.59606 * 17 8 6 20 20 H 1.08994 * 109.46729 * 299.99339 * 1 2 3 21 21 H 1.08999 * 109.47373 * 60.00151 * 1 2 3 22 22 H 1.09000 * 109.46600 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46848 * 240.00338 * 2 1 3 24 24 H 1.09006 * 109.47536 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47484 * 300.00203 * 3 2 1 26 26 H 1.09002 * 109.47328 * 60.00053 * 3 2 1 27 27 H 1.00899 * 111.00453 * 31.04749 * 4 2 1 28 28 H 1.08997 * 109.47672 * 59.99373 * 5 4 2 29 29 H 1.09005 * 109.46896 * 300.00027 * 5 4 2 30 30 H 0.97005 * 120.00026 * 179.97438 * 12 11 9 31 31 H 1.08999 * 115.54543 * 328.92814 * 17 8 6 32 32 H 1.09001 * 117.49354 * 359.97438 * 18 17 8 33 33 H 1.08991 * 117.50352 * 145.01784 * 18 17 8 34 34 H 1.09003 * 117.50596 * 214.97745 * 19 17 8 35 35 H 1.09008 * 117.50163 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 3.3671 -1.2354 0.9806 6 6 3.8347 -1.9375 2.2294 7 8 3.1164 -1.9809 3.2058 8 7 5.0511 -2.5171 2.2612 9 6 5.4767 -3.1554 3.3975 10 1 6.4773 -2.9884 3.7681 11 6 4.6206 -4.0172 4.0722 12 7 4.8734 -4.3526 5.3174 13 14 3.1107 -4.6989 3.2093 14 1 1.9391 -3.8359 3.5061 15 1 3.3476 -4.7249 1.7436 16 1 2.8446 -6.0777 3.6924 17 6 5.9184 -2.4651 1.0818 18 6 7.2551 -3.2059 1.1545 19 6 7.2244 -1.6769 1.1994 20 1 -0.3632 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.3795 -1.4182 1.4847 28 1 4.0524 -0.4220 0.7424 29 1 3.3432 -1.9443 0.1530 30 1 4.2756 -4.9540 5.7886 31 1 5.4044 -2.4470 0.1208 32 1 7.4893 -3.7316 2.0802 33 1 7.6207 -3.6754 0.2414 34 1 7.5700 -1.1405 0.3156 35 1 7.4382 -1.1966 2.1543 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308492839.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:12 Heat of formation + Delta-G solvation = -18.788052 kcal Electronic energy + Delta-G solvation = -16330.464007 eV Core-core repulsion = 13749.965656 eV Total energy + Delta-G solvation = -2580.498350 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.92431 -38.35787 -37.59418 -34.92999 -33.45213 -32.47546 -28.41936 -27.92380 -25.57294 -23.23913 -22.88556 -21.50678 -21.18047 -18.79351 -17.85431 -17.41543 -16.85415 -16.34109 -15.59418 -15.53750 -15.22400 -15.00047 -14.64867 -14.46494 -13.55720 -13.39803 -13.26112 -12.91717 -12.88435 -12.61534 -12.44718 -12.17556 -12.14200 -12.05177 -11.73573 -11.63600 -11.28683 -10.77831 -10.30708 -9.36165 -9.33492 -8.42435 -6.19831 1.19384 1.31306 1.45851 1.92330 2.39497 2.53598 2.96706 3.21609 3.28460 3.84463 4.03299 4.06728 4.16372 4.20789 4.28274 4.38309 4.46082 4.55628 4.84277 4.88820 4.92264 4.99057 5.01007 5.02384 5.24129 5.29827 5.45203 5.46771 5.70430 5.84060 6.08845 6.36345 6.78680 6.93045 7.34931 7.90397 8.67289 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.010482 C = 0.008075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.384107 B = 2670.514472 C = 3466.746237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 C -0.136 4.136 4 N -0.690 5.690 5 C 0.062 3.938 6 C 0.448 3.552 7 O -0.578 6.578 8 N -0.458 5.458 9 C -0.334 4.334 10 H 0.062 0.938 11 C 0.039 3.961 12 N -0.916 5.916 13 Si 0.961 3.039 14 H -0.276 1.276 15 H -0.260 1.260 16 H -0.302 1.302 17 C 0.040 3.960 18 C -0.172 4.172 19 C -0.178 4.178 20 H 0.054 0.946 21 H 0.085 0.915 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.339 0.661 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.272 0.728 31 H 0.146 0.854 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.006 6.945 -17.335 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.035 4.035 3 C -0.194 4.194 4 N -0.324 5.324 5 C -0.070 4.070 6 C 0.239 3.761 7 O -0.461 6.461 8 N -0.180 5.180 9 C -0.462 4.462 10 H 0.080 0.920 11 C -0.164 4.164 12 N -0.554 5.554 13 Si 0.790 3.210 14 H -0.202 1.202 15 H -0.184 1.184 16 H -0.231 1.231 17 C -0.064 4.064 18 C -0.209 4.209 19 C -0.216 4.216 20 H 0.073 0.927 21 H 0.104 0.896 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.158 0.842 28 H 0.131 0.869 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.164 0.836 32 H 0.093 0.907 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.167 7.410 -16.395 18.268 hybrid contribution -0.563 -1.352 0.181 1.476 sum -3.730 6.058 -16.214 17.706 Atomic orbital electron populations 1.21944 0.93627 1.02081 1.03087 1.21702 0.95790 0.95794 0.90169 1.21791 1.00874 0.94770 1.01996 1.60213 1.02559 1.33924 1.35661 1.21760 0.93008 0.98999 0.93259 1.21339 0.83420 0.80505 0.90862 1.90527 1.55471 1.61541 1.38606 1.43343 1.14883 1.48354 1.11431 1.18516 1.00724 1.24491 1.02419 0.92001 1.25998 1.00355 0.95029 0.95059 1.69836 1.40056 1.35145 1.10333 0.85537 0.81317 0.74853 0.79296 1.20243 1.18426 1.23109 1.22196 0.86904 1.07356 0.89923 1.23176 0.98896 0.95035 1.03792 1.23315 1.00751 0.94246 1.03283 0.92701 0.89578 0.92964 0.92611 0.93171 0.90259 0.93399 0.84224 0.86871 0.91259 0.91925 0.83646 0.90745 0.85391 0.84830 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.18 71.98 0.66 -2.30 16 2 C 0.07 1.71 3.22 44.92 0.14 1.86 16 3 C -0.14 -2.85 9.41 71.98 0.68 -2.17 16 4 N -0.69 -22.62 5.93 -495.58 -2.94 -25.56 16 5 C 0.06 2.08 4.59 85.56 0.39 2.47 16 6 C 0.45 21.17 5.91 87.66 0.52 21.69 16 7 O -0.58 -33.02 12.03 -3.06 -0.04 -33.06 16 8 N -0.46 -21.85 2.45 -613.15 -1.50 -23.35 16 9 C -0.33 -19.43 8.35 84.04 0.70 -18.73 16 10 H 0.06 3.87 7.47 -2.91 -0.02 3.85 16 11 C 0.04 2.38 4.88 84.93 0.41 2.80 16 12 N -0.92 -59.09 13.96 21.66 0.30 -58.78 16 13 Si 0.96 51.05 24.91 68.60 1.71 52.76 16 14 H -0.28 -15.49 6.38 99.48 0.63 -14.86 16 15 H -0.26 -12.61 7.11 99.48 0.71 -11.91 16 16 H -0.30 -15.59 7.11 99.48 0.71 -14.89 16 17 C 0.04 1.40 5.87 44.99 0.26 1.67 16 18 C -0.17 -5.55 9.80 30.59 0.30 -5.25 16 19 C -0.18 -5.31 10.36 30.59 0.32 -4.99 16 20 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.05 1.04 8.12 -2.39 -0.02 1.02 16 23 H 0.06 1.13 7.80 -2.38 -0.02 1.11 16 24 H 0.05 1.07 7.46 -2.38 -0.02 1.05 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.34 12.08 8.04 -89.69 -0.72 11.36 16 28 H 0.11 3.32 7.40 -2.39 -0.02 3.30 16 29 H 0.07 1.97 7.48 -2.38 -0.02 1.95 16 30 H 0.27 16.55 8.31 -92.70 -0.77 15.78 16 31 H 0.15 3.88 6.96 -2.39 -0.02 3.86 16 32 H 0.07 3.00 6.74 -2.39 -0.02 2.99 16 33 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 Total: -1.00 -75.62 284.23 2.20 -73.42 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.28 Total: 17.54 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 4.39 Total: -2.97 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -4.14 Total: -107.69 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.04 Total: -33.06 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 1.71 Total: 52.76 kcal Total: -75.62 2.20 -73.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308492839.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.628 kcal (2) G-P(sol) polarization free energy of solvation -75.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds