Wall clock time and date at job start Mon Mar 30 2020 03:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 112.90684 * 2 1 4 4 C 1.53784 * 113.61397 * 228.74204 * 2 1 3 5 5 C 1.53783 * 87.08140 * 220.01966 * 4 2 1 6 6 C 1.53778 * 87.08022 * 25.43517 * 5 4 2 7 7 H 1.09001 * 113.61503 * 89.19896 * 6 5 4 8 8 N 1.46907 * 113.61222 * 220.01879 * 6 5 4 9 9 C 1.46896 * 110.99733 * 255.49413 * 8 6 5 10 10 C 1.50703 * 109.47254 * 180.02562 * 9 8 6 11 11 O 1.21283 * 119.99488 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 9 14 14 C 1.50700 * 109.46769 * 179.72341 * 13 12 10 15 15 H 1.07997 * 120.00357 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99860 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00087 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47186 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46905 * 119.99897 * 18 16 14 21 21 H 1.48494 * 109.47159 * 240.00164 * 18 16 14 22 22 H 1.08997 * 109.46768 * 288.75261 * 1 2 3 23 23 H 1.08996 * 109.47025 * 48.74911 * 1 2 3 24 24 H 1.09004 * 109.46937 * 168.75504 * 1 2 3 25 25 H 1.09005 * 113.61131 * 105.47256 * 4 2 1 26 26 H 1.09000 * 113.69156 * 334.58290 * 4 2 1 27 27 H 1.09002 * 113.61336 * 270.88329 * 5 4 2 28 28 H 1.09001 * 113.61218 * 139.98420 * 5 4 2 29 29 H 1.00902 * 110.99966 * 131.54147 * 8 6 5 30 30 H 1.08998 * 109.47322 * 60.00099 * 9 8 6 31 31 H 1.09002 * 109.47668 * 300.00296 * 9 8 6 32 32 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 33 33 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 34 34 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 35 35 H 0.96999 * 120.00067 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0041 0.0000 4 6 2.1461 -0.9292 -1.0593 5 6 3.1924 -1.3136 0.0001 6 6 2.1461 -0.9291 1.0594 7 1 1.4955 -1.7539 1.3501 8 7 2.7108 -0.2143 2.2120 9 6 2.8016 -1.0947 3.3843 10 6 3.3834 -0.3284 4.5442 11 8 3.6924 0.8364 4.4075 12 7 3.5613 -0.9377 5.7332 13 6 4.1212 -0.1909 6.8624 14 6 4.2098 -1.0928 8.0665 15 1 3.8815 -2.1194 7.9976 16 6 4.7101 -0.6073 9.2561 17 7 5.1094 0.6429 9.3401 18 14 4.8194 -1.7249 10.7488 19 1 4.3096 -3.0742 10.3954 20 1 6.2347 -1.8299 11.1860 21 1 4.0013 -1.1594 11.8515 22 1 -0.3633 0.3304 0.9731 23 1 -0.3633 0.6776 -0.7726 24 1 -0.3633 -1.0080 -0.2004 25 1 2.5651 -0.3990 -1.9145 26 1 1.4955 -1.7540 -1.3499 27 1 4.0712 -0.6687 0.0000 28 1 3.4444 -2.3741 0.0002 29 1 2.1740 0.6138 2.4223 30 1 3.4431 -1.9447 3.1517 31 1 1.8063 -1.4524 3.6483 32 1 3.3144 -1.8694 5.8424 33 1 5.1173 0.1675 6.6028 34 1 3.4776 0.6584 7.0913 35 1 5.4610 0.9846 10.1770 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308539661.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:29 Heat of formation + Delta-G solvation = -30.827146 kcal Electronic energy + Delta-G solvation = -15170.123865 eV Core-core repulsion = 12589.103461 eV Total energy + Delta-G solvation = -2581.020405 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.54040 -38.51519 -34.31075 -33.72560 -32.28838 -29.93674 -28.09490 -26.10358 -23.67147 -22.90448 -22.03314 -19.87195 -19.34763 -17.22481 -16.19800 -15.59245 -15.35627 -14.88689 -14.71564 -14.37603 -13.88945 -13.39372 -13.20179 -13.16740 -12.71055 -12.20120 -11.93778 -11.75609 -11.49070 -11.36818 -11.02774 -10.92251 -10.88707 -10.48233 -10.31063 -10.22576 -9.36825 -8.98901 -8.72739 -8.33202 -7.84293 -6.15796 -4.22614 3.23921 3.30852 3.33976 3.42220 3.87817 4.32169 4.39693 4.47556 4.55257 4.80540 4.86976 5.20262 5.24994 5.29948 5.40052 5.51019 5.51273 5.56782 5.66742 5.69566 5.77231 5.90142 5.98527 6.22767 6.30802 7.06271 7.34338 7.44321 7.48204 7.54095 7.69269 7.98495 8.66008 8.80474 9.14662 9.44227 10.94505 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.068006 B = 0.004113 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.627788 B = 6805.975996 C = 6878.521307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 H 0.098 0.902 4 C -0.138 4.138 5 C -0.128 4.128 6 C 0.061 3.939 7 H 0.070 0.930 8 N -0.660 5.660 9 C 0.040 3.960 10 C 0.496 3.504 11 O -0.545 6.545 12 N -0.715 5.715 13 C 0.250 3.750 14 C -0.543 4.543 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.351 0.649 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.390 0.610 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 -5.650 -16.883 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 H 0.116 0.884 4 C -0.176 4.176 5 C -0.167 4.167 6 C -0.049 4.049 7 H 0.088 0.912 8 N -0.292 5.292 9 C -0.093 4.093 10 C 0.280 3.720 11 O -0.423 6.423 12 N -0.364 5.364 13 C 0.129 3.871 14 C -0.581 4.581 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.171 0.829 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.222 0.778 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.097 -4.758 -16.995 19.022 hybrid contribution -0.923 -1.093 1.281 1.920 sum -8.020 -5.850 -15.714 18.587 Atomic orbital electron populations 1.21769 0.95037 1.01638 1.01777 1.22813 0.95188 0.99335 0.96143 0.88419 1.22839 0.98665 0.99250 0.96819 1.23010 0.97748 1.01157 0.94761 1.23183 0.95606 0.96344 0.89746 0.91226 1.60303 1.56887 1.08097 1.03963 1.21895 1.00257 0.96645 0.90517 1.20393 0.79800 0.87854 0.83960 1.90660 1.51270 1.16923 1.83400 1.46448 1.63411 1.15038 1.11516 1.19094 0.94208 0.92081 0.81723 1.21274 1.43900 0.97648 0.95268 0.91863 1.24964 0.94881 0.95253 0.98983 1.69988 1.41397 1.14135 1.26768 0.86358 0.77851 0.80471 0.82211 1.19644 1.20785 1.20808 0.92613 0.92524 0.92721 0.91350 0.90392 0.89162 0.91914 0.82912 0.88698 0.92980 0.77812 0.95522 0.95625 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.71 37.16 0.36 -0.84 16 2 C -0.12 -1.10 3.96 -89.80 -0.36 -1.46 16 3 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -1.18 7.63 -25.92 -0.20 -1.37 16 5 C -0.13 -1.32 7.88 -25.92 -0.20 -1.52 16 6 C 0.06 0.67 3.67 -66.90 -0.25 0.43 16 7 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 8 N -0.66 -9.36 6.17 -107.13 -0.66 -10.02 16 9 C 0.04 0.58 6.03 -4.98 -0.03 0.55 16 10 C 0.50 10.06 7.87 -10.98 -0.09 9.98 16 11 O -0.54 -13.40 16.20 5.55 0.09 -13.31 16 12 N -0.71 -15.24 5.55 -61.47 -0.34 -15.58 16 13 C 0.25 6.72 5.43 -5.19 -0.03 6.69 16 14 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 15 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 18 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.41 7.95 -51.93 -0.41 0.00 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.59 7.97 -51.93 -0.41 0.18 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.35 5.17 8.28 -39.29 -0.33 4.85 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.05 0.66 8.13 -51.93 -0.42 0.23 16 32 H 0.39 7.07 8.32 -40.82 -0.34 6.73 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 296.65 15.07 4.47 4.47 Total: -1.00 -31.79 296.65 -7.59 -39.38 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.66 Total: 5.79 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -1.20 Total: -1.07 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.27 Total: -51.19 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.79 -7.59 -39.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308539661.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.555 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds