Wall clock time and date at job start Mon Mar 30 2020 03:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 112.90684 * 2 1 4 4 C 1.53784 * 113.61397 * 228.74204 * 2 1 3 5 5 C 1.53783 * 87.08140 * 220.01966 * 4 2 1 6 6 C 1.53778 * 87.08022 * 25.43517 * 5 4 2 7 7 H 1.09001 * 113.61503 * 89.19896 * 6 5 4 8 8 N 1.46907 * 113.61222 * 220.01879 * 6 5 4 9 9 C 1.46896 * 110.99733 * 255.49413 * 8 6 5 10 10 C 1.50703 * 109.47254 * 180.02562 * 9 8 6 11 11 O 1.21283 * 119.99488 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 9 14 14 C 1.50700 * 109.46769 * 179.72341 * 13 12 10 15 15 H 1.07997 * 120.00357 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99860 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00087 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47186 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46905 * 119.99897 * 18 16 14 21 21 H 1.48494 * 109.47159 * 240.00164 * 18 16 14 22 22 H 1.08997 * 109.46768 * 288.75261 * 1 2 3 23 23 H 1.08996 * 109.47025 * 48.74911 * 1 2 3 24 24 H 1.09004 * 109.46937 * 168.75504 * 1 2 3 25 25 H 1.09005 * 113.61131 * 105.47256 * 4 2 1 26 26 H 1.09000 * 113.69156 * 334.58290 * 4 2 1 27 27 H 1.09002 * 113.61336 * 270.88329 * 5 4 2 28 28 H 1.09001 * 113.61218 * 139.98420 * 5 4 2 29 29 H 1.00902 * 110.99966 * 131.54147 * 8 6 5 30 30 H 1.08998 * 109.47322 * 60.00099 * 9 8 6 31 31 H 1.09002 * 109.47668 * 300.00296 * 9 8 6 32 32 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 33 33 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 34 34 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 35 35 H 0.96999 * 120.00067 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0041 0.0000 4 6 2.1461 -0.9292 -1.0593 5 6 3.1924 -1.3136 0.0001 6 6 2.1461 -0.9291 1.0594 7 1 1.4955 -1.7539 1.3501 8 7 2.7108 -0.2143 2.2120 9 6 2.8016 -1.0947 3.3843 10 6 3.3834 -0.3284 4.5442 11 8 3.6924 0.8364 4.4075 12 7 3.5613 -0.9377 5.7332 13 6 4.1212 -0.1909 6.8624 14 6 4.2098 -1.0928 8.0665 15 1 3.8815 -2.1194 7.9976 16 6 4.7101 -0.6073 9.2561 17 7 5.1094 0.6429 9.3401 18 14 4.8194 -1.7249 10.7488 19 1 4.3096 -3.0742 10.3954 20 1 6.2347 -1.8299 11.1860 21 1 4.0013 -1.1594 11.8515 22 1 -0.3633 0.3304 0.9731 23 1 -0.3633 0.6776 -0.7726 24 1 -0.3633 -1.0080 -0.2004 25 1 2.5651 -0.3990 -1.9145 26 1 1.4955 -1.7540 -1.3499 27 1 4.0712 -0.6687 0.0000 28 1 3.4444 -2.3741 0.0002 29 1 2.1740 0.6138 2.4223 30 1 3.4431 -1.9447 3.1517 31 1 1.8063 -1.4524 3.6483 32 1 3.3144 -1.8694 5.8424 33 1 5.1173 0.1675 6.6028 34 1 3.4776 0.6584 7.0913 35 1 5.4610 0.9846 10.1770 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308539661.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:29 Heat of formation + Delta-G solvation = -54.691771 kcal Electronic energy + Delta-G solvation = -15171.158713 eV Core-core repulsion = 12589.103461 eV Total energy + Delta-G solvation = -2582.055252 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.70033 -39.88756 -36.18416 -34.98230 -34.32472 -30.64023 -29.89703 -27.61415 -24.83231 -24.17412 -23.30700 -21.43101 -20.36188 -18.92906 -17.73647 -17.17809 -16.88531 -16.26980 -16.18741 -15.46478 -15.33579 -14.51806 -14.35991 -14.22096 -14.01207 -13.87802 -13.73738 -12.96040 -12.89681 -12.73289 -12.44769 -12.22520 -12.19409 -11.76578 -11.46118 -11.28248 -10.99363 -10.81987 -10.66425 -9.83403 -9.36412 -8.29611 -6.46414 1.43234 1.44573 1.58073 1.78156 2.29701 2.51157 3.05322 3.34289 3.61730 3.76199 3.96421 4.04018 4.07344 4.35661 4.46917 4.56565 4.58861 4.76196 4.90935 4.99096 5.07630 5.10886 5.16839 5.23479 5.28888 5.48066 5.48746 5.52694 5.69567 5.84533 6.11682 6.34568 6.65203 6.93736 7.23258 7.51448 8.82965 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.068006 B = 0.004113 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.627788 B = 6805.975996 C = 6878.521307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 H 0.083 0.917 4 C -0.126 4.126 5 C -0.132 4.132 6 C 0.058 3.942 7 H 0.086 0.914 8 N -0.679 5.679 9 C 0.057 3.943 10 C 0.491 3.509 11 O -0.594 6.594 12 N -0.709 5.709 13 C 0.266 3.734 14 C -0.555 4.555 15 H 0.085 0.915 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.987 3.013 19 H -0.252 1.252 20 H -0.279 1.279 21 H -0.279 1.279 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.344 0.656 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.409 0.591 33 H -0.015 1.015 34 H -0.013 1.013 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.257 -8.336 -17.432 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 H 0.101 0.899 4 C -0.164 4.164 5 C -0.171 4.171 6 C -0.051 4.051 7 H 0.104 0.896 8 N -0.312 5.312 9 C -0.075 4.075 10 C 0.279 3.721 11 O -0.475 6.475 12 N -0.359 5.359 13 C 0.143 3.857 14 C -0.593 4.593 15 H 0.103 0.897 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.810 3.190 19 H -0.175 1.175 20 H -0.205 1.205 21 H -0.204 1.204 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.163 0.837 30 H 0.135 0.865 31 H 0.102 0.898 32 H 0.244 0.756 33 H 0.003 0.997 34 H 0.005 0.995 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.316 -7.495 -17.586 20.847 hybrid contribution -0.543 -0.196 1.377 1.493 sum -8.860 -7.691 -16.209 20.009 Atomic orbital electron populations 1.21747 0.93902 1.02542 1.01689 1.22783 0.96084 0.98601 0.96031 0.89895 1.22815 0.97938 0.99346 0.96266 1.23004 0.97347 1.01357 0.95376 1.23359 0.96223 0.96893 0.88638 0.89630 1.60329 1.57888 1.08374 1.04589 1.21813 1.01680 0.95971 0.88082 1.21489 0.78405 0.87538 0.84708 1.90636 1.53135 1.19481 1.84215 1.46184 1.63350 1.15668 1.10738 1.18534 0.91447 0.91803 0.83958 1.21661 1.43821 0.98493 0.95343 0.89710 1.26100 0.94069 0.96812 1.02760 1.70150 1.42387 1.16574 1.27949 0.85083 0.77863 0.78782 0.77310 1.17543 1.20485 1.20426 0.93302 0.91820 0.91535 0.90859 0.88638 0.91114 0.90898 0.83702 0.86465 0.89824 0.75569 0.99699 0.99526 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.71 71.98 0.70 -1.34 16 2 C -0.12 -2.01 3.96 -10.26 -0.04 -2.05 16 3 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 4 C -0.13 -1.84 7.63 31.12 0.24 -1.60 16 5 C -0.13 -2.47 7.88 31.12 0.25 -2.23 16 6 C 0.06 1.15 3.67 45.44 0.17 1.32 16 7 H 0.09 1.46 7.85 -2.39 -0.02 1.44 16 8 N -0.68 -18.61 6.17 -492.84 -3.04 -21.65 16 9 C 0.06 1.54 6.03 85.56 0.52 2.06 16 10 C 0.49 20.02 7.87 87.66 0.69 20.71 16 11 O -0.59 -30.33 16.20 -3.04 -0.05 -30.38 16 12 N -0.71 -30.28 5.55 -466.79 -2.59 -32.87 16 13 C 0.27 14.85 5.43 85.63 0.46 15.31 16 14 C -0.56 -30.47 9.28 25.60 0.24 -30.24 16 15 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 16 C 0.00 0.11 5.46 84.66 0.46 0.58 16 17 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 18 Si 0.99 42.47 29.54 68.60 2.03 44.49 16 19 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 22 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 0.80 7.95 -2.39 -0.02 0.78 16 25 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.10 1.10 7.97 -2.39 -0.02 1.08 16 27 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.34 10.13 8.28 -89.69 -0.74 9.39 16 30 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.08 1.81 8.13 -2.39 -0.02 1.79 16 32 H 0.41 14.19 8.32 -92.71 -0.77 13.42 16 33 H -0.01 -0.95 8.14 -2.38 -0.02 -0.97 16 34 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 35 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -71.33 296.65 -0.13 -71.46 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -0.44 Total: 22.96 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 3.68 Total: 2.52 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -5.35 Total: -111.05 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.05 Total: -30.38 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -71.33 -0.13 -71.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308539661.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.764 kcal (2) G-P(sol) polarization free energy of solvation -71.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds