Wall clock time and date at job start Mon Mar 30 2020 04:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.12916 * 2 1 4 4 N 1.45751 * 109.30170 * 119.48395 * 2 1 3 5 5 C 1.33353 * 124.10702 * 139.38433 * 4 2 1 6 6 O 1.21283 * 118.24903 * 177.75711 * 5 4 2 7 7 C 1.50180 * 123.50834 * 357.78023 * 5 4 2 8 8 C 1.53069 * 109.88937 * 17.57844 * 7 5 4 9 9 C 1.52919 * 109.30089 * 240.52257 * 2 1 3 10 10 H 1.09004 * 109.73475 * 308.77302 * 9 2 1 11 11 N 1.46901 * 109.60560 * 69.17738 * 9 2 1 12 12 C 1.46896 * 111.00245 * 204.18823 * 11 9 2 13 13 C 1.53002 * 109.47246 * 179.97438 * 12 11 9 14 14 C 1.50706 * 109.46931 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99398 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47399 * 299.99813 * 18 16 14 21 21 H 1.48498 * 109.47295 * 60.00420 * 18 16 14 22 22 H 1.08997 * 109.47028 * 179.47529 * 1 2 3 23 23 H 1.08996 * 109.47071 * 299.47703 * 1 2 3 24 24 H 1.09003 * 109.47286 * 59.47669 * 1 2 3 25 25 H 0.96998 * 117.94994 * 319.38902 * 4 2 1 26 26 H 1.08998 * 109.40074 * 257.45050 * 7 5 4 27 27 H 1.09001 * 109.40058 * 137.70894 * 7 5 4 28 28 H 1.09000 * 109.67526 * 191.36331 * 8 7 5 29 29 H 1.09002 * 109.69945 * 70.85256 * 8 7 5 30 30 H 1.00901 * 110.99921 * 80.23291 * 11 9 2 31 31 H 1.09004 * 109.47535 * 59.99890 * 12 11 9 32 32 H 1.09004 * 109.47041 * 299.99929 * 12 11 9 33 33 H 1.09000 * 109.46986 * 60.00111 * 13 12 11 34 34 H 1.08992 * 109.46974 * 300.00175 * 13 12 11 35 35 H 0.97000 * 119.99706 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 7 2.0118 -0.6770 1.1974 5 6 3.0500 -1.5137 1.2168 6 8 3.3859 -1.9871 2.2817 7 6 3.8259 -1.9008 -0.0094 8 6 3.5521 -0.9013 -1.1359 9 6 2.0355 -0.7102 -1.2564 10 1 1.5507 -1.6820 -1.3501 11 7 1.7341 0.1069 -2.4394 12 6 1.6608 -0.7241 -3.6485 13 6 1.3453 0.1600 -4.8567 14 6 1.2707 -0.6926 -6.0972 15 1 1.4317 -1.7585 -6.0304 16 6 0.9969 -0.1118 -7.3173 17 7 0.8014 1.1862 -7.3987 18 14 0.9037 -1.1686 -8.8548 19 1 0.5989 -0.3103 -10.0277 20 1 2.2057 -1.8508 -9.0663 21 1 -0.1670 -2.1848 -8.6929 22 1 -0.3633 -1.0276 -0.0094 23 1 -0.3633 0.5057 0.8946 24 1 -0.3634 0.5219 -0.8853 25 1 1.5482 -0.5085 2.0326 26 1 3.5240 -2.8982 -0.3290 27 1 4.8911 -1.9029 0.2219 28 1 3.9490 -1.2883 -2.0744 29 1 4.0249 0.0530 -0.9034 30 1 2.4111 0.8469 -2.5498 31 1 0.8749 -1.4701 -3.5296 32 1 2.6165 -1.2248 -3.8038 33 1 2.1309 0.9062 -4.9759 34 1 0.3896 0.6602 -4.7012 35 1 0.8494 1.7349 -6.6003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308678278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:16 Heat of formation + Delta-G solvation = -61.992897 kcal Electronic energy + Delta-G solvation = -15716.233899 eV Core-core repulsion = 13133.862046 eV Total energy + Delta-G solvation = -2582.371853 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.49587 -37.69445 -35.21153 -33.52572 -32.55519 -30.74330 -28.62660 -25.90001 -23.74101 -23.07377 -21.91386 -21.10908 -19.31411 -17.22993 -16.69090 -16.30961 -15.54228 -15.03279 -14.62697 -14.29914 -14.04340 -13.74182 -13.34977 -13.00339 -12.69482 -12.26607 -12.16459 -11.88380 -11.49532 -11.46647 -11.23266 -10.97106 -10.87086 -10.26430 -10.15956 -9.87796 -9.81258 -9.18170 -8.63702 -8.37172 -8.07901 -6.40126 -4.09750 2.54737 3.15669 3.41663 3.43246 3.62106 4.22863 4.47915 4.50322 4.53982 4.73447 5.03310 5.12801 5.18742 5.24734 5.37792 5.48030 5.62408 5.66888 5.79289 5.88349 6.01339 6.10462 6.19311 6.23744 6.67501 6.72053 7.08263 7.25305 7.40222 7.53980 7.69028 8.10742 8.17737 8.41729 8.84331 9.62713 11.01017 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.050332 B = 0.005008 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.167840 B = 5589.846628 C = 5889.618834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.076 0.924 4 N -0.714 5.714 5 C 0.520 3.480 6 O -0.568 6.568 7 C -0.131 4.131 8 C -0.157 4.157 9 C 0.078 3.922 10 H 0.085 0.915 11 N -0.681 5.681 12 C 0.074 3.926 13 C 0.012 3.988 14 C -0.605 4.605 15 H 0.047 0.953 16 C 0.017 3.983 17 N -0.911 5.911 18 Si 1.068 2.932 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.288 1.288 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.089 0.911 25 H 0.397 0.603 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.339 0.661 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.005 0.995 34 H 0.017 0.983 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 -2.506 13.471 13.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.094 0.906 4 N -0.366 5.366 5 C 0.307 3.693 6 O -0.447 6.447 7 C -0.172 4.172 8 C -0.197 4.197 9 C -0.034 4.034 10 H 0.103 0.897 11 N -0.310 5.310 12 C -0.054 4.054 13 C -0.025 4.025 14 C -0.644 4.644 15 H 0.066 0.934 16 C -0.187 4.187 17 N -0.547 5.547 18 Si 0.897 3.103 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.214 1.214 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.107 0.893 25 H 0.233 0.767 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.157 0.843 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.023 0.977 34 H 0.035 0.965 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.901 -2.738 12.241 12.687 hybrid contribution 1.026 -0.188 1.767 2.052 sum 2.927 -2.925 14.008 14.607 Atomic orbital electron populations 1.22063 0.93518 1.02655 1.03092 1.20927 0.95381 0.95976 0.83722 0.90588 1.45697 1.32221 1.46362 1.12273 1.20233 0.80192 0.77861 0.90976 1.90740 1.67875 1.54364 1.31760 1.21577 1.01374 1.01250 0.92955 1.22479 0.98277 0.99796 0.99103 1.21830 0.93047 0.97523 0.90965 0.89706 1.60547 1.54034 1.13589 1.02878 1.22053 0.98740 0.95942 0.88625 1.19197 0.96406 0.95180 0.91722 1.21975 1.53550 0.95164 0.93662 0.93417 1.25827 0.93660 0.97635 1.01625 1.70780 1.45892 1.05034 1.33017 0.83550 0.76481 0.74768 0.75534 1.20731 1.21498 1.21421 0.92487 0.92822 0.89254 0.76710 0.88215 0.88276 0.90123 0.91002 0.84261 0.92045 0.96127 0.97693 0.96488 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.32 37.16 0.35 -1.26 16 2 C 0.15 1.55 3.32 -68.38 -0.23 1.32 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 N -0.71 -7.79 5.12 -54.86 -0.28 -8.07 16 5 C 0.52 6.73 7.71 -11.87 -0.09 6.64 16 6 O -0.57 -9.43 17.78 5.55 0.10 -9.33 16 7 C -0.13 -1.42 6.03 -28.10 -0.17 -1.59 16 8 C -0.16 -1.73 5.32 -26.52 -0.14 -1.87 16 9 C 0.08 0.95 1.88 -67.58 -0.13 0.82 16 10 H 0.08 1.11 7.78 -51.93 -0.40 0.71 16 11 N -0.68 -10.21 5.89 -106.58 -0.63 -10.84 16 12 C 0.07 1.42 5.43 -3.83 -0.02 1.40 16 13 C 0.01 0.30 4.55 -27.88 -0.13 0.18 16 14 C -0.60 -16.76 9.11 -34.44 -0.31 -17.08 16 15 H 0.05 1.30 7.74 -52.49 -0.41 0.89 16 16 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 17 N -0.91 -27.47 13.65 55.43 0.76 -26.71 16 18 Si 1.07 24.82 29.90 -169.99 -5.08 19.73 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.09 1.06 7.88 -51.93 -0.41 0.65 16 25 H 0.40 3.92 8.66 -40.82 -0.35 3.57 16 26 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 0.94 7.35 -51.93 -0.38 0.56 16 29 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.34 4.91 8.49 -39.29 -0.33 4.58 16 31 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 32 H 0.02 0.39 7.37 -51.93 -0.38 0.01 16 33 H 0.00 0.12 8.01 -51.93 -0.42 -0.29 16 34 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 35 H 0.27 8.07 7.22 -40.82 -0.29 7.78 16 LS Contribution 287.21 15.07 4.33 4.33 Total: -1.00 -31.43 287.21 -7.32 -38.75 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.55 Total: 3.20 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.97 Total: -11.06 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.15 Total: -45.62 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.10 Total: -9.33 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.73 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.43 -7.32 -38.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308678278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.242 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds