Wall clock time and date at job start Mon Mar 30 2020 04:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.29880 * 2 1 4 4 N 1.45755 * 109.29547 * 240.41521 * 2 1 3 5 5 C 1.32962 * 124.40954 * 258.74890 * 4 2 1 6 6 O 1.21278 * 118.35670 * 177.80543 * 5 4 2 7 7 C 1.50173 * 123.39578 * 357.88781 * 5 4 2 8 8 C 1.53073 * 109.88880 * 17.52636 * 7 5 4 9 9 C 1.52923 * 109.30085 * 119.58543 * 2 1 3 10 10 H 1.09004 * 109.59983 * 189.31558 * 9 2 1 11 11 N 1.46903 * 109.60062 * 309.79792 * 9 2 1 12 12 C 1.46903 * 110.99636 * 205.00070 * 11 9 2 13 13 C 1.53002 * 109.46647 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.46890 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99852 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99819 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00013 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99920 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46940 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47021 * 119.99752 * 18 16 14 21 21 H 1.48490 * 109.47379 * 240.00246 * 18 16 14 22 22 H 1.09001 * 109.47002 * 299.99851 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00288 * 1 2 3 24 24 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 25 25 H 0.96997 * 117.94903 * 78.76791 * 4 2 1 26 26 H 1.08997 * 109.39996 * 257.40092 * 7 5 4 27 27 H 1.09000 * 109.33007 * 137.61053 * 7 5 4 28 28 H 1.09006 * 109.66896 * 191.36750 * 8 7 5 29 29 H 1.08991 * 109.67758 * 70.83244 * 8 7 5 30 30 H 1.00907 * 110.99502 * 81.05144 * 11 9 2 31 31 H 1.08994 * 109.46939 * 300.00018 * 12 11 9 32 32 H 1.08998 * 109.46744 * 60.00805 * 12 11 9 33 33 H 1.09005 * 109.47218 * 300.00021 * 13 12 11 34 34 H 1.08993 * 109.47232 * 60.00230 * 13 12 11 35 35 H 0.97007 * 119.99806 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 7 2.0117 -0.6792 -1.1963 5 6 2.4620 -1.9300 -1.2204 6 8 2.7990 -2.4005 -2.2861 7 6 2.5735 -2.7920 0.0042 8 6 1.7189 -2.2079 1.1319 9 6 2.0355 -0.7126 1.2551 10 1 3.1128 -0.5730 1.3460 11 7 1.3624 -0.1621 2.4391 12 6 2.1804 -0.3503 3.6447 13 6 1.4478 0.2337 4.8543 14 6 2.2872 0.0413 6.0910 15 1 3.2471 -0.4489 6.0213 16 6 1.8298 0.4911 7.3115 17 7 0.6612 1.0884 7.3963 18 14 2.8700 0.2520 8.8446 19 1 4.1323 -0.4417 8.4831 20 1 3.1859 1.5753 9.4398 21 1 2.1191 -0.5672 9.8295 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 2.0044 -0.1874 -2.0323 26 1 3.6148 -2.8342 0.3237 27 1 2.2255 -3.7981 -0.2298 28 1 1.9547 -2.7114 2.0695 29 1 0.6626 -2.3413 0.8987 30 1 0.4466 -0.5693 2.5563 31 1 2.3532 -1.4146 3.8041 32 1 3.1362 0.1582 3.5182 33 1 1.2745 1.2981 4.6951 34 1 0.4921 -0.2750 4.9807 35 1 0.3393 1.4046 8.2550 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308678280.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:23 Heat of formation + Delta-G solvation = -54.649947 kcal Electronic energy + Delta-G solvation = -15738.066413 eV Core-core repulsion = 13156.012974 eV Total energy + Delta-G solvation = -2582.053439 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.55153 -37.70981 -35.03943 -33.23271 -32.35221 -30.78257 -28.71492 -25.99374 -23.94137 -23.72633 -21.78261 -20.70205 -18.73833 -17.13789 -16.38912 -16.22817 -15.68428 -15.13250 -14.47426 -14.33598 -14.05653 -13.88362 -13.55583 -12.90306 -12.48796 -12.27678 -11.91618 -11.77421 -11.61225 -11.27939 -11.05384 -10.97786 -10.82458 -10.55554 -10.08665 -9.79607 -9.47345 -9.20664 -9.14728 -8.41135 -7.97473 -6.05130 -4.07865 2.59806 3.21747 3.27922 3.35805 3.39300 4.29395 4.45693 4.54187 4.61937 4.74172 5.11601 5.15948 5.24208 5.31424 5.32460 5.60504 5.62296 5.70757 5.80157 5.91154 6.07244 6.22121 6.24415 6.35352 6.71178 6.88054 7.22734 7.37058 7.63600 7.71380 7.83793 8.00235 8.15804 8.36768 8.99515 9.56570 11.06236 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.053580 B = 0.004973 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.459896 B = 5628.919358 C = 5953.607623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 H 0.092 0.908 4 N -0.712 5.712 5 C 0.520 3.480 6 O -0.570 6.570 7 C -0.132 4.132 8 C -0.158 4.158 9 C 0.078 3.922 10 H 0.084 0.916 11 N -0.679 5.679 12 C 0.066 3.934 13 C 0.025 3.975 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 H 0.085 0.915 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.397 0.603 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.341 0.659 31 H 0.019 0.981 32 H 0.059 0.941 33 H 0.026 0.974 34 H 0.014 0.986 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -3.600 -13.167 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.110 0.890 4 N -0.363 5.363 5 C 0.308 3.692 6 O -0.450 6.450 7 C -0.172 4.172 8 C -0.197 4.197 9 C -0.033 4.033 10 H 0.102 0.898 11 N -0.309 5.309 12 C -0.062 4.062 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.104 0.896 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.232 0.768 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.159 0.841 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.032 0.968 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.616 -3.228 -13.447 13.843 hybrid contribution 0.345 -0.804 0.859 1.226 sum 0.961 -4.032 -12.587 13.252 Atomic orbital electron populations 1.22257 0.94804 1.02282 1.03100 1.20979 0.94792 0.96625 0.83694 0.88997 1.45559 1.64325 1.13896 1.12473 1.20113 0.75987 0.82162 0.90958 1.90740 1.50585 1.71995 1.31662 1.21584 1.02999 0.99572 0.93081 1.22509 1.00575 0.97669 0.98994 1.21771 0.99507 0.90970 0.91101 0.89822 1.60603 1.06193 1.61290 1.02862 1.22222 0.96794 0.97911 0.89289 1.19075 0.95274 0.96969 0.89960 1.21196 1.04244 1.38186 0.92487 0.92705 1.24993 0.95068 0.95147 0.99078 1.69976 1.18739 1.39435 1.25036 0.86541 0.80446 0.77874 0.83163 1.19768 1.20960 1.21020 0.89575 0.92724 0.92669 0.76841 0.88261 0.88408 0.90181 0.90762 0.84054 0.96317 0.92207 0.95586 0.96769 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 8.85 37.16 0.33 -1.32 16 2 C 0.14 1.52 3.63 -68.37 -0.25 1.28 16 3 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 4 N -0.71 -7.68 5.01 -54.95 -0.28 -7.96 16 5 C 0.52 6.72 7.71 -12.04 -0.09 6.63 16 6 O -0.57 -9.48 17.78 5.56 0.10 -9.38 16 7 C -0.13 -1.43 6.03 -28.10 -0.17 -1.60 16 8 C -0.16 -1.74 5.26 -26.52 -0.14 -1.88 16 9 C 0.08 0.95 2.24 -67.57 -0.15 0.80 16 10 H 0.08 1.08 7.79 -51.93 -0.40 0.68 16 11 N -0.68 -10.22 5.44 -106.58 -0.58 -10.80 16 12 C 0.07 1.25 5.43 -3.82 -0.02 1.23 16 13 C 0.02 0.60 5.23 -27.88 -0.15 0.46 16 14 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 15 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H 0.09 0.93 7.06 -51.93 -0.37 0.56 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.55 6.53 -51.93 -0.34 0.21 16 25 H 0.40 3.84 8.79 -40.82 -0.36 3.48 16 26 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.08 0.93 7.41 -51.93 -0.38 0.54 16 29 H 0.07 0.78 6.39 -51.93 -0.33 0.45 16 30 H 0.34 4.96 7.68 -39.29 -0.30 4.66 16 31 H 0.02 0.35 7.42 -51.93 -0.39 -0.04 16 32 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 283.35 15.07 4.27 4.27 Total: -1.00 -30.81 283.35 -7.19 -38.00 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.37 Total: 2.65 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -1.05 Total: -7.45 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.12 Total: -44.22 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.10 Total: -9.38 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.81 -7.19 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308678280.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.648 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds