Wall clock time and date at job start Mon Mar 30 2020 04:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.29880 * 2 1 4 4 N 1.45755 * 109.29547 * 240.41521 * 2 1 3 5 5 C 1.32962 * 124.40954 * 258.74890 * 4 2 1 6 6 O 1.21278 * 118.35670 * 177.80543 * 5 4 2 7 7 C 1.50173 * 123.39578 * 357.88781 * 5 4 2 8 8 C 1.53073 * 109.88880 * 17.52636 * 7 5 4 9 9 C 1.52923 * 109.30085 * 119.58543 * 2 1 3 10 10 H 1.09004 * 109.59983 * 189.31558 * 9 2 1 11 11 N 1.46903 * 109.60062 * 309.79792 * 9 2 1 12 12 C 1.46903 * 110.99636 * 205.00070 * 11 9 2 13 13 C 1.53002 * 109.46647 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.46890 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99852 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99819 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00013 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99920 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46940 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47021 * 119.99752 * 18 16 14 21 21 H 1.48490 * 109.47379 * 240.00246 * 18 16 14 22 22 H 1.09001 * 109.47002 * 299.99851 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00288 * 1 2 3 24 24 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 25 25 H 0.96997 * 117.94903 * 78.76791 * 4 2 1 26 26 H 1.08997 * 109.39996 * 257.40092 * 7 5 4 27 27 H 1.09000 * 109.33007 * 137.61053 * 7 5 4 28 28 H 1.09006 * 109.66896 * 191.36750 * 8 7 5 29 29 H 1.08991 * 109.67758 * 70.83244 * 8 7 5 30 30 H 1.00907 * 110.99502 * 81.05144 * 11 9 2 31 31 H 1.08994 * 109.46939 * 300.00018 * 12 11 9 32 32 H 1.08998 * 109.46744 * 60.00805 * 12 11 9 33 33 H 1.09005 * 109.47218 * 300.00021 * 13 12 11 34 34 H 1.08993 * 109.47232 * 60.00230 * 13 12 11 35 35 H 0.97007 * 119.99806 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 7 2.0117 -0.6792 -1.1963 5 6 2.4620 -1.9300 -1.2204 6 8 2.7990 -2.4005 -2.2861 7 6 2.5735 -2.7920 0.0042 8 6 1.7189 -2.2079 1.1319 9 6 2.0355 -0.7126 1.2551 10 1 3.1128 -0.5730 1.3460 11 7 1.3624 -0.1621 2.4391 12 6 2.1804 -0.3503 3.6447 13 6 1.4478 0.2337 4.8543 14 6 2.2872 0.0413 6.0910 15 1 3.2471 -0.4489 6.0213 16 6 1.8298 0.4911 7.3115 17 7 0.6612 1.0884 7.3963 18 14 2.8700 0.2520 8.8446 19 1 4.1323 -0.4417 8.4831 20 1 3.1859 1.5753 9.4398 21 1 2.1191 -0.5672 9.8295 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 2.0044 -0.1874 -2.0323 26 1 3.6148 -2.8342 0.3237 27 1 2.2255 -3.7981 -0.2298 28 1 1.9547 -2.7114 2.0695 29 1 0.6626 -2.3413 0.8987 30 1 0.4466 -0.5693 2.5563 31 1 2.3532 -1.4146 3.8041 32 1 3.1362 0.1582 3.5182 33 1 1.2745 1.2981 4.6951 34 1 0.4921 -0.2750 4.9807 35 1 0.3393 1.4046 8.2550 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308678280.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:22 Heat of formation + Delta-G solvation = -76.994809 kcal Electronic energy + Delta-G solvation = -15739.035359 eV Core-core repulsion = 13156.012974 eV Total energy + Delta-G solvation = -2583.022385 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.54802 -38.84243 -36.42167 -34.91284 -33.56371 -32.05785 -30.17362 -27.25615 -25.58211 -24.66173 -22.91834 -22.32886 -19.74514 -18.47152 -18.09339 -17.21617 -16.75413 -16.56619 -16.19061 -15.49057 -15.27188 -14.92587 -14.56920 -14.37692 -14.10594 -13.45755 -13.20298 -12.94380 -12.84083 -12.68696 -12.54350 -12.44888 -12.15907 -11.90264 -11.65611 -11.33721 -11.20468 -10.82643 -10.53661 -10.12792 -9.23787 -8.17856 -6.28072 1.42158 1.43314 1.55471 1.59502 2.27979 2.43091 3.16615 3.23204 3.60216 3.70265 3.80929 4.09532 4.24147 4.36074 4.46806 4.56670 4.66489 4.70755 4.79732 4.86860 4.96996 5.04464 5.13701 5.22121 5.44671 5.49795 5.73236 5.81547 5.82969 6.13422 6.26087 6.37360 6.56498 6.90322 7.18958 7.41362 8.94199 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.053580 B = 0.004973 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.459896 B = 5628.919358 C = 5953.607623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.099 0.901 4 N -0.700 5.700 5 C 0.518 3.482 6 O -0.611 6.611 7 C -0.127 4.127 8 C -0.150 4.150 9 C 0.078 3.922 10 H 0.080 0.920 11 N -0.679 5.679 12 C 0.085 3.915 13 C 0.030 3.970 14 C -0.541 4.541 15 H 0.060 0.940 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.962 3.038 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.279 1.279 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.404 0.596 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.345 0.655 31 H 0.025 0.975 32 H 0.058 0.942 33 H -0.004 1.004 34 H -0.006 1.006 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 -4.115 -13.308 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.117 0.883 4 N -0.350 5.350 5 C 0.306 3.694 6 O -0.494 6.494 7 C -0.167 4.167 8 C -0.189 4.189 9 C -0.033 4.033 10 H 0.098 0.902 11 N -0.309 5.309 12 C -0.044 4.044 13 C -0.007 4.007 14 C -0.580 4.580 15 H 0.078 0.922 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.787 3.213 19 H -0.186 1.186 20 H -0.206 1.206 21 H -0.205 1.205 22 H 0.096 0.904 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.240 0.760 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.164 0.836 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.015 0.985 34 H 0.012 0.988 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.258 -3.728 -13.597 14.155 hybrid contribution 0.107 -0.606 0.870 1.065 sum 1.365 -4.334 -12.728 13.514 Atomic orbital electron populations 1.22211 0.93997 1.02473 1.03362 1.20927 0.95290 0.96534 0.82713 0.88313 1.45486 1.63241 1.13385 1.12871 1.20444 0.75397 0.82600 0.90931 1.90727 1.52612 1.72891 1.33158 1.21572 1.03556 0.99642 0.91913 1.22417 1.01100 0.96475 0.98948 1.21791 0.99102 0.92019 0.90385 0.90158 1.60455 1.06065 1.62087 1.02319 1.21797 0.96215 0.97589 0.88750 1.18932 0.94721 0.95162 0.91926 1.21660 1.04706 1.37883 0.93738 0.92198 1.25900 0.96251 0.94818 1.02568 1.70101 1.20513 1.40531 1.25976 0.85450 0.79012 0.77911 0.78967 1.18621 1.20600 1.20514 0.90411 0.91383 0.92519 0.76034 0.87360 0.87383 0.90449 0.90014 0.83586 0.95725 0.92374 0.98545 0.98792 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 8.85 71.98 0.64 -2.25 16 2 C 0.15 2.87 3.63 45.11 0.16 3.03 16 3 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 4 N -0.70 -13.77 5.01 -447.15 -2.24 -16.01 16 5 C 0.52 12.53 7.71 87.77 0.68 13.20 16 6 O -0.61 -19.71 17.78 -3.02 -0.05 -19.76 16 7 C -0.13 -2.48 6.03 29.71 0.18 -2.31 16 8 C -0.15 -2.99 5.26 30.73 0.16 -2.83 16 9 C 0.08 1.76 2.24 45.00 0.10 1.86 16 10 H 0.08 1.91 7.79 -2.38 -0.02 1.89 16 11 N -0.68 -19.69 5.44 -491.10 -2.67 -22.36 16 12 C 0.09 3.17 5.43 86.30 0.47 3.64 16 13 C 0.03 1.50 5.23 29.85 0.16 1.65 16 14 C -0.54 -29.59 9.11 25.60 0.23 -29.35 16 15 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 16 C 0.00 0.15 5.46 84.66 0.46 0.61 16 17 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 18 Si 0.96 43.10 29.54 68.60 2.03 45.12 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H 0.08 1.56 7.06 -2.39 -0.02 1.54 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.00 6.53 -2.39 -0.02 0.98 16 25 H 0.40 7.07 8.79 -92.71 -0.81 6.25 16 26 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.08 1.63 7.41 -2.38 -0.02 1.61 16 29 H 0.08 1.53 6.39 -2.39 -0.02 1.51 16 30 H 0.35 9.69 7.68 -89.69 -0.69 9.00 16 31 H 0.02 0.89 7.42 -2.39 -0.02 0.87 16 32 H 0.06 2.18 8.06 -2.39 -0.02 2.16 16 33 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 34 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 Total: -1.00 -65.58 283.35 0.17 -65.41 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -0.41 Total: 15.30 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 3.24 Total: -12.74 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -4.63 Total: -93.33 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.05 Total: -19.76 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -65.58 0.17 -65.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308678280.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.581 kcal (2) G-P(sol) polarization free energy of solvation -65.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds