Wall clock time and date at job start Mon Mar 30 2020 03:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46969 * 2 1 4 4 N 1.46505 * 109.46921 * 119.99922 * 2 1 3 5 5 C 1.36930 * 119.99906 * 295.42938 * 4 2 1 6 6 H 1.07998 * 120.00579 * 40.24371 * 5 4 2 7 7 C 1.38820 * 119.99659 * 220.24854 * 5 4 2 8 8 N 1.31614 * 119.99808 * 19.25395 * 7 5 4 9 9 Si 1.86803 * 119.99958 * 199.25315 * 7 5 4 10 10 H 1.48498 * 109.46962 * 269.99879 * 9 7 5 11 11 H 1.48502 * 109.46760 * 29.99974 * 9 7 5 12 12 H 1.48502 * 109.46725 * 150.00036 * 9 7 5 13 13 C 1.46501 * 119.99725 * 115.42888 * 4 2 1 14 14 C 1.53004 * 109.47064 * 269.99774 * 13 4 2 15 15 H 1.09000 * 110.21463 * 64.30193 * 14 13 4 16 16 C 1.54480 * 110.24160 * 186.23137 * 14 13 4 17 17 C 1.54624 * 101.76559 * 93.58598 * 16 14 13 18 18 C 1.51283 * 104.19678 * 24.79284 * 17 16 14 19 19 O 1.21281 * 124.94389 * 163.72454 * 18 17 16 20 20 N 1.34617 * 110.14941 * 343.77163 * 18 17 16 21 21 H 1.09007 * 109.47417 * 306.48954 * 1 2 3 22 22 H 1.08996 * 109.47398 * 66.49423 * 1 2 3 23 23 H 1.09004 * 109.47160 * 186.49179 * 1 2 3 24 24 H 1.08997 * 109.47129 * 239.99994 * 2 1 3 25 25 H 1.08996 * 109.46984 * 179.55080 * 3 2 1 26 26 H 1.08996 * 109.47316 * 299.55429 * 3 2 1 27 27 H 1.09006 * 109.46968 * 59.54864 * 3 2 1 28 28 H 0.97004 * 119.99655 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.46876 * 29.99857 * 13 4 2 30 30 H 1.09000 * 109.47018 * 149.99578 * 13 4 2 31 31 H 1.09008 * 110.96360 * 211.70501 * 16 14 13 32 32 H 1.08993 * 110.97360 * 335.46097 * 16 14 13 33 33 H 1.08995 * 110.48428 * 143.47220 * 17 16 14 34 34 H 1.08996 * 110.48377 * 265.98418 * 17 16 14 35 35 H 0.97000 * 124.46943 * 179.53353 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7664 -0.1707 2.4377 6 1 0.8020 0.2638 2.6558 7 6 2.7508 -0.2021 3.4161 8 7 4.0114 -0.3674 3.0761 9 14 2.2860 -0.0095 5.2151 10 1 2.3155 1.4289 5.5827 11 1 0.9197 -0.5485 5.4337 12 1 3.2536 -0.7560 6.0588 13 6 2.7761 -1.9375 1.0641 14 6 1.8116 -3.1250 1.0845 15 1 1.1525 -3.0899 0.2171 16 6 2.5998 -4.4535 1.1036 17 6 2.6824 -4.7494 2.6190 18 6 1.4951 -4.0177 3.2051 19 8 1.0343 -4.2139 4.3097 20 7 1.0231 -3.1177 2.3223 21 1 -0.3634 0.6112 0.8262 22 1 -0.3634 0.4099 -0.9423 23 1 -0.3634 -1.0211 0.1162 24 1 1.8934 -0.5138 -0.8900 25 1 3.1299 1.4425 0.0081 26 1 1.6832 1.9540 -0.8939 27 1 1.6700 1.9587 0.8860 28 1 4.6993 -0.3889 3.7597 29 1 3.3248 -1.9311 0.1222 30 1 3.4784 -2.0254 1.8931 31 1 2.0530 -5.2390 0.5818 32 1 3.5943 -4.3232 0.6768 33 1 2.5995 -5.8205 2.8035 34 1 3.6136 -4.3628 3.0329 35 1 0.2610 -2.5393 2.4823 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379503394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:21 Heat of formation + Delta-G solvation = -46.863695 kcal Electronic energy + Delta-G solvation = -16937.807616 eV Core-core repulsion = 14356.091814 eV Total energy + Delta-G solvation = -2581.715801 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.08064 -38.42513 -36.93432 -34.18151 -31.95790 -31.85611 -29.20138 -27.68794 -26.46744 -24.30587 -21.77008 -21.39165 -21.01393 -18.31014 -18.20080 -16.88802 -16.53153 -16.04723 -15.73034 -15.39581 -14.70487 -14.45316 -14.33216 -13.98428 -13.46763 -13.31924 -13.13878 -13.03274 -12.90639 -12.66546 -12.52365 -12.26391 -12.11552 -11.76194 -11.66270 -11.38828 -11.16972 -10.76282 -10.46739 -9.84519 -8.40615 -7.76531 -5.38393 1.32306 1.40454 1.47485 1.77397 2.47250 2.77357 3.30494 3.52611 3.73999 3.95855 4.17331 4.40268 4.46171 4.65008 4.75039 4.83574 4.84188 4.88340 5.00535 5.04735 5.14728 5.24231 5.25483 5.26531 5.35431 5.67046 5.71304 5.75976 5.91275 6.15115 6.37901 6.55854 7.27615 7.47405 7.98175 8.47321 9.15579 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.019302 B = 0.015092 C = 0.010492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.278887 B = 1854.834533 C = 2668.037926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.155 3.845 3 C -0.137 4.137 4 N -0.589 5.589 5 C -0.224 4.224 6 H 0.045 0.955 7 C -0.015 4.015 8 N -0.907 5.907 9 Si 0.914 3.086 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.303 1.303 13 C 0.134 3.866 14 C 0.112 3.888 15 H 0.092 0.908 16 C -0.111 4.111 17 C -0.147 4.147 18 C 0.500 3.500 19 O -0.614 6.614 20 N -0.691 5.691 21 H 0.031 0.969 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.026 0.974 26 H 0.062 0.938 27 H 0.030 0.970 28 H 0.245 0.755 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.512 -5.756 -10.130 11.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.049 3.951 3 C -0.196 4.196 4 N -0.310 5.310 5 C -0.355 4.355 6 H 0.063 0.937 7 C -0.212 4.212 8 N -0.552 5.552 9 Si 0.745 3.255 10 H -0.211 1.211 11 H -0.214 1.214 12 H -0.230 1.230 13 C 0.007 3.993 14 C 0.005 3.995 15 H 0.110 0.890 16 C -0.149 4.149 17 C -0.187 4.187 18 C 0.287 3.713 19 O -0.498 6.498 20 N -0.340 5.340 21 H 0.050 0.950 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.491 -5.896 -9.550 11.497 hybrid contribution -0.310 0.828 1.783 1.990 sum -2.801 -5.067 -7.768 9.688 Atomic orbital electron populations 1.22073 0.97016 1.00722 1.00443 1.20663 0.93209 0.91983 0.89253 1.21950 0.99394 0.98365 0.99871 1.44002 1.63866 1.22012 1.01075 1.18716 0.94296 1.33780 0.88726 0.93723 1.25387 0.95011 1.01315 0.99519 1.70019 0.99026 1.54378 1.31771 0.86124 0.77113 0.77048 0.85182 1.21117 1.21384 1.23040 1.21369 0.93298 0.84120 1.00510 1.22581 0.94185 0.96748 0.86008 0.88984 1.22622 1.02597 0.95948 0.93703 1.22271 0.96266 1.02135 0.98052 1.21639 0.85057 0.80824 0.83735 1.90626 1.65928 1.70847 1.22366 1.46203 1.32456 1.37559 1.17749 0.95006 0.91631 0.93360 0.91423 0.95520 0.91898 0.95075 0.94522 0.93139 0.91992 0.87688 0.87818 0.86773 0.89103 0.76090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 9.13 71.98 0.66 -3.80 16 2 C 0.15 5.49 3.37 44.99 0.15 5.64 16 3 C -0.14 -5.05 9.08 71.98 0.65 -4.40 16 4 N -0.59 -24.99 2.27 -678.00 -1.54 -26.53 16 5 C -0.22 -11.20 7.09 84.04 0.60 -10.60 16 6 H 0.05 2.33 7.22 -2.91 -0.02 2.31 16 7 C -0.01 -0.79 4.98 84.86 0.42 -0.36 16 8 N -0.91 -50.74 11.53 21.65 0.25 -50.49 16 9 Si 0.91 46.88 29.60 68.60 2.03 48.91 16 10 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 11 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 12 H -0.30 -16.14 7.11 99.48 0.71 -15.44 16 13 C 0.13 5.19 4.94 86.38 0.43 5.61 16 14 C 0.11 3.44 3.80 45.45 0.17 3.61 16 15 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 16 C -0.11 -2.60 6.70 31.65 0.21 -2.39 16 17 C -0.15 -4.43 6.86 30.59 0.21 -4.22 16 18 C 0.50 20.34 8.44 87.87 0.74 21.08 16 19 O -0.61 -30.63 18.03 -3.03 -0.05 -30.69 16 20 N -0.69 -25.94 5.09 -439.16 -2.23 -28.17 16 21 H 0.03 1.10 7.45 -2.38 -0.02 1.08 16 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 24 H 0.07 2.12 7.77 -2.39 -0.02 2.11 16 25 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.03 1.27 7.58 -2.38 -0.02 1.26 16 28 H 0.25 13.72 8.31 -92.70 -0.77 12.95 16 29 H 0.05 1.78 7.88 -2.38 -0.02 1.76 16 30 H 0.06 2.92 5.63 -2.39 -0.01 2.91 16 31 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.10 2.14 7.89 -2.39 -0.02 2.12 16 33 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.40 16.05 8.70 -92.71 -0.81 15.24 16 Total: -1.00 -65.50 285.79 2.96 -62.54 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.26 Total: 14.24 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 4.24 Total: 10.18 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -3.52 Total: -105.19 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.05 Total: -30.69 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -65.50 2.96 -62.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379503394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.678 kcal (2) G-P(sol) polarization free energy of solvation -65.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds