Wall clock time and date at job start Mon Mar 30 2020 02:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 H 1.08999 * 109.47164 * 54.90461 * 3 2 1 5 5 C 1.50698 * 109.47084 * 174.90656 * 3 2 1 6 6 H 1.07998 * 120.00569 * 120.00416 * 5 3 2 7 7 C 1.37880 * 119.99864 * 299.99859 * 5 3 2 8 8 N 1.31519 * 120.00019 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00082 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47035 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47310 * 120.00324 * 9 7 5 12 12 H 1.48505 * 109.47079 * 240.00253 * 9 7 5 13 13 N 1.46902 * 109.47395 * 294.90373 * 3 2 1 14 14 C 1.46904 * 110.99748 * 154.00085 * 13 3 2 15 15 H 1.08997 * 110.85884 * 32.04271 * 14 13 3 16 16 C 1.54630 * 110.96597 * 268.25462 * 14 13 3 17 17 C 1.51352 * 104.16607 * 217.11129 * 16 14 13 18 18 O 1.21269 * 124.92886 * 196.20190 * 17 16 14 19 19 N 1.34418 * 110.12427 * 16.20196 * 17 16 14 20 20 C 1.46507 * 124.34638 * 180.46154 * 19 17 16 21 21 C 1.46759 * 111.30616 * 0.43979 * 19 17 16 22 22 H 1.08999 * 109.46993 * 65.82284 * 1 2 3 23 23 H 1.08996 * 109.47084 * 185.83270 * 1 2 3 24 24 H 1.09002 * 109.46652 * 305.82602 * 1 2 3 25 25 H 1.09005 * 109.46802 * 240.00616 * 2 1 3 26 26 H 1.08994 * 109.47448 * 120.00592 * 2 1 3 27 27 H 0.97002 * 120.00029 * 179.97438 * 8 7 5 28 28 H 1.00899 * 110.99568 * 30.04901 * 13 3 2 29 29 H 1.09007 * 110.49071 * 335.76055 * 16 14 13 30 30 H 1.08994 * 110.49170 * 98.41001 * 16 14 13 31 31 H 1.09005 * 109.46724 * 269.97711 * 20 19 17 32 32 H 1.08996 * 109.47319 * 29.97038 * 20 19 17 33 33 H 1.08995 * 109.47271 * 149.97690 * 20 19 17 34 34 H 1.09000 * 110.24964 * 223.98067 * 21 19 17 35 35 H 1.09004 * 110.24674 * 101.98028 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6041 1.9820 0.8408 5 6 3.5417 1.4443 0.1261 6 1 4.1483 1.8885 -0.6492 7 6 4.1414 0.8790 1.2316 8 7 3.4028 0.3377 2.1756 9 14 6.0028 0.8819 1.3883 10 1 6.5985 1.5462 0.2013 11 1 6.3950 1.6179 2.6170 12 1 6.4948 -0.5169 1.4710 13 7 1.6535 2.0986 -1.2562 14 6 1.5514 3.5535 -1.0804 15 1 2.2659 3.9056 -0.3364 16 6 0.1099 3.9653 -0.7016 17 6 -0.1044 5.2753 -1.4287 18 8 -0.9892 6.0680 -1.1851 19 7 0.8287 5.4323 -2.3834 20 6 0.9183 6.5966 -3.2682 21 6 1.7465 4.2878 -2.4254 22 1 -0.3633 0.4209 -0.9375 23 1 -0.3633 -1.0223 0.1044 24 1 -0.3633 0.6015 0.8333 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8247 -0.0603 2.9531 28 1 0.7908 1.7161 -1.6133 29 1 -0.6038 3.2168 -1.0462 30 1 0.0244 4.1078 0.3756 31 1 0.3260 6.4174 -4.1655 32 1 0.5364 7.4765 -2.7506 33 1 1.9590 6.7620 -3.5468 34 1 2.7759 4.6331 -2.5208 35 1 1.4904 3.6292 -3.2554 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379597857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:37 Heat of formation + Delta-G solvation = -55.838780 kcal Electronic energy + Delta-G solvation = -16119.851226 eV Core-core repulsion = 13537.746236 eV Total energy + Delta-G solvation = -2582.104990 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.42608 -38.46796 -36.99055 -34.62524 -33.34771 -31.04346 -28.60098 -28.16257 -26.70095 -24.58173 -22.17783 -21.50598 -20.51694 -18.25171 -17.79974 -17.50292 -16.59149 -16.54966 -15.68460 -15.52000 -14.83504 -14.63002 -14.56972 -14.27351 -13.67530 -13.51863 -13.29264 -13.15219 -13.03946 -12.84804 -12.50643 -12.44400 -12.12984 -11.94702 -11.49812 -11.41394 -11.19893 -10.85183 -10.39556 -9.71959 -9.02166 -8.03004 -6.14181 1.43579 1.47157 1.47272 1.57226 2.07116 2.47463 3.20716 3.28442 3.58129 3.75257 4.08472 4.23952 4.44069 4.51125 4.55831 4.61749 4.67520 4.71529 4.75679 4.85575 4.90555 5.06995 5.16540 5.29184 5.40867 5.54891 5.65139 5.80060 5.94588 6.02388 6.38565 6.50262 6.97147 7.00731 7.08534 7.55043 9.00291 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.007530 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.227147 B = 3717.424101 C = 4276.477113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.225 3.775 4 H -0.023 1.023 5 C -0.508 4.508 6 H 0.057 0.943 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.287 1.287 12 H -0.284 1.284 13 N -0.666 5.666 14 C 0.090 3.910 15 H 0.078 0.922 16 C -0.178 4.178 17 C 0.516 3.484 18 O -0.584 6.584 19 N -0.617 5.617 20 C 0.090 3.910 21 C 0.119 3.881 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.036 0.964 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.258 0.742 28 H 0.335 0.665 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.045 5.564 -9.535 11.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C 0.117 3.883 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.075 0.925 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.213 1.213 12 H -0.210 1.210 13 N -0.298 5.298 14 C -0.023 4.023 15 H 0.096 0.904 16 C -0.220 4.220 17 C 0.304 3.696 18 O -0.465 6.465 19 N -0.351 5.351 20 C -0.051 4.051 21 C -0.004 4.004 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.155 0.845 29 H 0.131 0.869 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.792 5.960 -9.573 11.617 hybrid contribution 0.139 -0.086 1.128 1.139 sum -2.653 5.874 -8.446 10.624 Atomic orbital electron populations 1.21779 0.96376 1.01099 1.00642 1.21613 0.94097 0.99074 1.01378 1.18955 0.93987 0.90569 0.84755 1.00561 1.21558 0.92814 1.36064 1.04234 0.92477 1.25654 1.01927 0.95561 0.95768 1.70009 1.36102 1.39979 1.10052 0.85602 0.81311 0.77487 0.77775 1.19073 1.21310 1.21017 1.60506 1.37106 1.01059 1.31126 1.22337 0.93392 0.90039 0.96482 0.90363 1.23137 1.00757 0.96147 1.01982 1.21066 0.80491 0.87758 0.80292 1.90644 1.35993 1.50250 1.69617 1.48376 1.30281 1.21565 1.34831 1.21751 1.04115 0.86096 0.93103 1.22199 0.94006 0.86111 0.98056 0.92041 0.92733 0.94470 0.94150 0.91587 0.93245 0.84491 0.86904 0.89360 0.91323 0.91838 0.88321 0.88796 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.64 71.98 0.69 -4.20 16 2 C -0.12 -5.39 5.36 30.59 0.16 -5.22 16 3 C 0.23 10.31 1.90 44.17 0.08 10.40 16 4 H -0.02 -1.19 7.84 -2.39 -0.02 -1.21 16 5 C -0.51 -26.34 8.61 25.60 0.22 -26.12 16 6 H 0.06 2.97 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.47 5.29 84.65 0.45 0.92 16 8 N -0.92 -51.33 11.29 21.45 0.24 -51.09 16 9 Si 0.95 42.53 29.54 68.60 2.03 44.55 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 N -0.67 -24.07 6.15 -467.91 -2.88 -26.95 16 14 C 0.09 2.89 3.22 45.97 0.15 3.04 16 15 H 0.08 2.94 7.75 -2.39 -0.02 2.93 16 16 C -0.18 -5.50 6.56 30.61 0.20 -5.30 16 17 C 0.52 16.75 8.02 87.92 0.71 17.46 16 18 O -0.58 -22.99 17.59 -3.00 -0.05 -23.04 16 19 N -0.62 -16.16 3.33 -842.82 -2.81 -18.97 16 20 C 0.09 1.76 10.96 127.77 1.40 3.16 16 21 C 0.12 3.00 7.08 86.83 0.62 3.61 16 22 H 0.06 1.79 6.64 -2.39 -0.02 1.77 16 23 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.07 3.38 5.95 -2.39 -0.01 3.37 16 27 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 28 H 0.33 10.66 5.92 -89.69 -0.53 10.12 16 29 H 0.11 3.15 7.58 -2.38 -0.02 3.13 16 30 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.06 1.36 7.93 -2.39 -0.02 1.35 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.09 2.09 8.07 -2.38 -0.02 2.07 16 Total: -1.00 -62.43 286.67 1.74 -60.69 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.54 Total: 17.05 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 4.68 Total: -2.25 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -5.45 Total: -97.00 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.04 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -62.43 1.74 -60.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379597857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.847 kcal (2) G-P(sol) polarization free energy of solvation -62.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds