Wall clock time and date at job start Mon Mar 30 2020 02:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46926 * 2 1 4 4 H 1.09005 * 109.46978 * 54.55782 * 3 2 1 5 5 C 1.50698 * 109.47074 * 174.55197 * 3 2 1 6 6 H 1.08001 * 120.00221 * 119.99934 * 5 3 2 7 7 C 1.37878 * 120.00342 * 300.00727 * 5 3 2 8 8 N 1.31510 * 119.99877 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00097 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46887 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47255 * 119.99844 * 9 7 5 12 12 H 1.48504 * 109.46820 * 239.99599 * 9 7 5 13 13 N 1.46895 * 109.47298 * 294.55619 * 3 2 1 14 14 C 1.46895 * 111.00062 * 151.84992 * 13 3 2 15 15 H 1.09001 * 110.85930 * 323.65099 * 14 13 3 16 16 C 1.54629 * 110.97140 * 87.43673 * 14 13 3 17 17 C 1.51280 * 104.19934 * 142.91436 * 16 14 13 18 18 O 1.21282 * 124.94426 * 163.78694 * 17 16 14 19 19 N 1.34422 * 110.11409 * 343.75315 * 17 16 14 20 20 C 1.46497 * 124.34893 * 179.58812 * 19 17 16 21 21 C 1.46822 * 111.31749 * 359.61819 * 19 17 16 22 22 H 1.09000 * 109.46835 * 178.16895 * 1 2 3 23 23 H 1.08993 * 109.47297 * 298.17404 * 1 2 3 24 24 H 1.09005 * 109.46765 * 58.17375 * 1 2 3 25 25 H 1.08997 * 109.47319 * 240.00066 * 2 1 3 26 26 H 1.09002 * 109.47145 * 119.99843 * 2 1 3 27 27 H 0.97008 * 120.00240 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99984 * 27.89948 * 13 3 2 29 29 H 1.09001 * 110.48989 * 261.60107 * 16 14 13 30 30 H 1.09007 * 110.48279 * 24.23838 * 16 14 13 31 31 H 1.08993 * 109.47367 * 359.96562 * 20 19 17 32 32 H 1.08995 * 109.47465 * 119.97580 * 20 19 17 33 33 H 1.09004 * 109.46976 * 239.97608 * 20 19 17 34 34 H 1.08995 * 110.24181 * 257.98764 * 21 19 17 35 35 H 1.09000 * 110.28587 * 135.96576 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5992 1.9837 0.8373 5 6 3.5409 1.4447 0.1349 6 1 4.1519 1.8873 -0.6379 7 6 4.1342 0.8816 1.2448 8 7 3.3903 0.3430 2.1860 9 14 5.9947 0.8850 1.4123 10 1 6.5971 1.5471 0.2274 11 1 6.3798 1.6235 2.6417 12 1 6.4863 -0.5136 1.5006 13 7 1.6606 2.0961 -1.2597 14 6 1.5076 3.5454 -1.0756 15 1 1.0783 3.7695 -0.0991 16 6 2.8587 4.2730 -1.2660 17 6 2.4898 5.5644 -1.9623 18 8 3.2077 6.5383 -2.0458 19 7 1.2507 5.4751 -2.4758 20 6 0.5796 6.5522 -3.2077 21 6 0.6556 4.1598 -2.2083 22 1 -0.3633 -1.0272 -0.0328 23 1 -0.3633 0.4852 0.9058 24 1 -0.3633 0.5420 -0.8732 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8076 -0.0529 2.9672 28 1 0.8188 1.6890 -1.6390 29 1 3.3207 4.4787 -0.3004 30 1 3.5266 3.6800 -1.8909 31 1 1.2385 7.4185 -3.2642 32 1 0.3392 6.2121 -4.2150 33 1 -0.3384 6.8273 -2.6884 34 1 0.7063 3.5347 -3.0998 35 1 -0.3789 4.2719 -1.8837 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379597858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:41 Heat of formation + Delta-G solvation = -34.138043 kcal Electronic energy + Delta-G solvation = -16171.779707 eV Core-core repulsion = 13590.615731 eV Total energy + Delta-G solvation = -2581.163976 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.02655 -36.88435 -35.46632 -32.91873 -31.68113 -29.59334 -27.44981 -26.37868 -25.38171 -22.81703 -20.65799 -19.85164 -19.04437 -16.70261 -16.33236 -15.89869 -15.16037 -14.75520 -14.31920 -13.84628 -13.38807 -13.37806 -13.06278 -12.68621 -12.40598 -12.21802 -12.06684 -11.72138 -11.19946 -11.08402 -10.91961 -10.73166 -10.53068 -9.96097 -9.78989 -9.68438 -9.43583 -9.11401 -8.55621 -8.37105 -7.44657 -6.00112 -4.03849 2.92513 3.22539 3.31613 3.40275 3.45623 4.42754 4.71846 4.83266 5.02786 5.30182 5.33067 5.39754 5.50309 5.64385 5.69900 5.84700 6.04044 6.08818 6.10605 6.33574 6.43423 6.60124 6.70192 6.76800 6.99344 7.07793 7.29895 7.39185 7.71329 7.87493 8.17024 8.32013 8.46363 8.63161 9.03868 9.61624 11.05504 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.025806 B = 0.008645 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.740202 B = 3237.923828 C = 4175.942727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.218 3.782 4 H 0.007 0.993 5 C -0.492 4.492 6 H 0.065 0.935 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.674 5.674 14 C 0.088 3.912 15 H 0.058 0.942 16 C -0.134 4.134 17 C 0.518 3.482 18 O -0.546 6.546 19 N -0.627 5.627 20 C 0.094 3.906 21 C 0.101 3.899 22 H 0.037 0.963 23 H 0.043 0.957 24 H 0.035 0.965 25 H 0.042 0.958 26 H 0.101 0.899 27 H 0.259 0.741 28 H 0.322 0.678 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.963 4.712 -7.033 11.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C 0.111 3.889 4 H 0.024 0.976 5 C -0.531 4.531 6 H 0.083 0.917 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.307 5.307 14 C -0.023 4.023 15 H 0.075 0.925 16 C -0.174 4.174 17 C 0.307 3.693 18 O -0.424 6.424 19 N -0.363 5.363 20 C -0.048 4.048 21 C -0.022 4.022 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.119 0.881 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.959 5.237 -7.170 11.281 hybrid contribution 0.000 -0.094 0.664 0.671 sum -6.960 5.143 -6.506 10.827 Atomic orbital electron populations 1.21892 0.99589 0.99648 0.99683 1.21810 0.91217 1.00345 1.03289 1.19265 0.95801 0.90008 0.83836 0.97579 1.21255 0.91021 1.36394 1.04388 0.91719 1.24951 0.98078 0.95602 0.95879 1.69871 1.34655 1.39514 1.09606 0.86526 0.85836 0.77587 0.78022 1.19642 1.21230 1.21188 1.60825 1.37600 0.99768 1.32476 1.22268 0.93580 0.90870 0.95629 0.92450 1.22412 0.99536 0.92648 1.02817 1.21435 0.80587 0.89580 0.77690 1.90659 1.54562 1.36357 1.60823 1.48206 1.16973 1.14872 1.56199 1.21486 0.97474 0.90319 0.95533 1.22328 0.97141 0.83224 0.99536 0.94349 0.93827 0.94644 0.93943 0.88100 0.93118 0.85859 0.88019 0.86576 0.90220 0.92447 0.92493 0.90486 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.78 37.16 0.36 -2.29 16 2 C -0.13 -2.80 5.34 -26.73 -0.14 -2.94 16 3 C 0.22 4.98 2.03 -68.87 -0.14 4.84 16 4 H 0.01 0.17 7.43 -51.93 -0.39 -0.22 16 5 C -0.49 -12.73 8.18 -34.44 -0.28 -13.02 16 6 H 0.06 1.70 7.11 -52.49 -0.37 1.33 16 7 C 0.06 1.48 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -24.66 11.29 55.43 0.63 -24.04 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.67 -12.60 6.13 -99.25 -0.61 -13.21 16 14 C 0.09 1.48 3.43 -66.08 -0.23 1.25 16 15 H 0.06 1.02 7.51 -51.93 -0.39 0.63 16 16 C -0.13 -2.44 5.63 -26.74 -0.15 -2.59 16 17 C 0.52 9.31 8.03 -10.86 -0.09 9.22 16 18 O -0.55 -11.50 17.35 5.56 0.10 -11.40 16 19 N -0.63 -9.12 3.33 -180.25 -0.60 -9.72 16 20 C 0.09 1.06 11.14 59.85 0.67 1.72 16 21 C 0.10 1.34 6.85 -3.09 -0.02 1.32 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.03 0.54 6.42 -51.93 -0.33 0.21 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.10 2.54 5.94 -51.93 -0.31 2.23 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 28 H 0.32 5.32 6.23 -39.29 -0.24 5.08 16 29 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 30 H 0.12 2.24 7.69 -51.93 -0.40 1.84 16 31 H 0.08 0.97 7.53 -51.93 -0.39 0.58 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.96 8.07 -51.93 -0.42 0.55 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 283.88 15.07 4.28 4.28 Total: -1.00 -29.27 283.88 -6.68 -35.95 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.34 Total: 3.17 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -0.11 Total: -1.11 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.58 Total: -46.96 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.10 Total: -11.40 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.27 -6.68 -35.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379597858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.816 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds