Wall clock time and date at job start Mon Mar 30 2020 02:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46926 * 2 1 4 4 H 1.09005 * 109.46978 * 54.55782 * 3 2 1 5 5 C 1.50698 * 109.47074 * 174.55197 * 3 2 1 6 6 H 1.08001 * 120.00221 * 119.99934 * 5 3 2 7 7 C 1.37878 * 120.00342 * 300.00727 * 5 3 2 8 8 N 1.31510 * 119.99877 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00097 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46887 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47255 * 119.99844 * 9 7 5 12 12 H 1.48504 * 109.46820 * 239.99599 * 9 7 5 13 13 N 1.46895 * 109.47298 * 294.55619 * 3 2 1 14 14 C 1.46895 * 111.00062 * 151.84992 * 13 3 2 15 15 H 1.09001 * 110.85930 * 323.65099 * 14 13 3 16 16 C 1.54629 * 110.97140 * 87.43673 * 14 13 3 17 17 C 1.51280 * 104.19934 * 142.91436 * 16 14 13 18 18 O 1.21282 * 124.94426 * 163.78694 * 17 16 14 19 19 N 1.34422 * 110.11409 * 343.75315 * 17 16 14 20 20 C 1.46497 * 124.34893 * 179.58812 * 19 17 16 21 21 C 1.46822 * 111.31749 * 359.61819 * 19 17 16 22 22 H 1.09000 * 109.46835 * 178.16895 * 1 2 3 23 23 H 1.08993 * 109.47297 * 298.17404 * 1 2 3 24 24 H 1.09005 * 109.46765 * 58.17375 * 1 2 3 25 25 H 1.08997 * 109.47319 * 240.00066 * 2 1 3 26 26 H 1.09002 * 109.47145 * 119.99843 * 2 1 3 27 27 H 0.97008 * 120.00240 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99984 * 27.89948 * 13 3 2 29 29 H 1.09001 * 110.48989 * 261.60107 * 16 14 13 30 30 H 1.09007 * 110.48279 * 24.23838 * 16 14 13 31 31 H 1.08993 * 109.47367 * 359.96562 * 20 19 17 32 32 H 1.08995 * 109.47465 * 119.97580 * 20 19 17 33 33 H 1.09004 * 109.46976 * 239.97608 * 20 19 17 34 34 H 1.08995 * 110.24181 * 257.98764 * 21 19 17 35 35 H 1.09000 * 110.28587 * 135.96576 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5992 1.9837 0.8373 5 6 3.5409 1.4447 0.1349 6 1 4.1519 1.8873 -0.6379 7 6 4.1342 0.8816 1.2448 8 7 3.3903 0.3430 2.1860 9 14 5.9947 0.8850 1.4123 10 1 6.5971 1.5471 0.2274 11 1 6.3798 1.6235 2.6417 12 1 6.4863 -0.5136 1.5006 13 7 1.6606 2.0961 -1.2597 14 6 1.5076 3.5454 -1.0756 15 1 1.0783 3.7695 -0.0991 16 6 2.8587 4.2730 -1.2660 17 6 2.4898 5.5644 -1.9623 18 8 3.2077 6.5383 -2.0458 19 7 1.2507 5.4751 -2.4758 20 6 0.5796 6.5522 -3.2077 21 6 0.6556 4.1598 -2.2083 22 1 -0.3633 -1.0272 -0.0328 23 1 -0.3633 0.4852 0.9058 24 1 -0.3633 0.5420 -0.8732 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8076 -0.0529 2.9672 28 1 0.8188 1.6890 -1.6390 29 1 3.3207 4.4787 -0.3004 30 1 3.5266 3.6800 -1.8909 31 1 1.2385 7.4185 -3.2642 32 1 0.3392 6.2121 -4.2150 33 1 -0.3384 6.8273 -2.6884 34 1 0.7063 3.5347 -3.0998 35 1 -0.3789 4.2719 -1.8837 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379597858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:40 Heat of formation + Delta-G solvation = -54.440181 kcal Electronic energy + Delta-G solvation = -16172.660073 eV Core-core repulsion = 13590.615731 eV Total energy + Delta-G solvation = -2582.044343 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.37177 -38.45791 -36.97419 -34.53726 -33.39833 -31.01832 -28.99449 -27.79359 -26.74183 -24.54759 -22.04333 -21.52895 -20.43862 -18.47485 -17.66096 -17.42246 -16.64309 -16.44956 -15.77904 -15.49877 -14.87855 -14.64100 -14.54175 -14.30242 -13.86270 -13.29582 -13.21722 -13.14839 -12.99606 -12.75900 -12.65740 -12.41528 -12.14576 -11.84016 -11.48376 -11.34544 -10.94647 -10.92502 -10.37787 -9.71447 -9.07801 -8.03667 -6.12658 1.40266 1.44594 1.51024 1.54476 2.08007 2.46186 3.22616 3.31948 3.55095 3.73951 4.14739 4.36900 4.48742 4.56742 4.59251 4.61933 4.65270 4.77172 4.79583 4.87529 4.98171 5.08405 5.16454 5.31798 5.42866 5.57168 5.66785 5.80988 5.96736 6.02159 6.39501 6.52618 6.99811 7.02023 7.12527 7.55888 8.99718 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.025806 B = 0.008645 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.740202 B = 3237.923828 C = 4175.942727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.225 3.775 4 H -0.022 1.022 5 C -0.501 4.501 6 H 0.054 0.946 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 0.943 3.057 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.282 1.282 13 N -0.670 5.670 14 C 0.087 3.913 15 H 0.049 0.951 16 C -0.134 4.134 17 C 0.515 3.485 18 O -0.585 6.585 19 N -0.618 5.618 20 C 0.088 3.912 21 C 0.112 3.888 22 H 0.055 0.945 23 H 0.036 0.964 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.258 0.742 28 H 0.340 0.660 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.834 4.850 -8.584 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.117 3.883 4 H -0.005 1.005 5 C -0.539 4.539 6 H 0.072 0.928 7 C -0.187 4.187 8 N -0.561 5.561 9 Si 0.770 3.230 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.208 1.208 13 N -0.304 5.304 14 C -0.024 4.024 15 H 0.067 0.933 16 C -0.175 4.175 17 C 0.303 3.697 18 O -0.467 6.467 19 N -0.351 5.351 20 C -0.052 4.052 21 C -0.011 4.011 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.161 0.839 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.881 5.365 -8.752 13.574 hybrid contribution 0.552 -0.120 1.113 1.249 sum -8.329 5.245 -7.639 12.459 Atomic orbital electron populations 1.21763 0.96012 1.01261 1.00696 1.21629 0.94430 0.98916 1.01332 1.18997 0.93953 0.90763 0.84595 1.00495 1.21559 0.92965 1.35543 1.03882 0.92752 1.25566 1.01328 0.95803 0.95992 1.69987 1.35768 1.40352 1.09944 0.85734 0.82097 0.77509 0.77660 1.19654 1.21317 1.20779 1.60584 1.38853 1.00791 1.30195 1.22223 0.93405 0.89702 0.97067 0.93322 1.22294 1.00275 0.93461 1.01457 1.21255 0.81681 0.88693 0.78021 1.90632 1.56005 1.37445 1.62570 1.48288 1.15695 1.16082 1.55046 1.21770 0.97732 0.88823 0.96916 1.22367 0.97755 0.82324 0.98616 0.92617 0.94498 0.91732 0.94241 0.91672 0.93290 0.83908 0.90463 0.87978 0.91583 0.89726 0.89770 0.88676 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 9.78 71.98 0.70 -3.91 16 2 C -0.12 -5.38 5.34 30.60 0.16 -5.22 16 3 C 0.23 10.30 2.03 44.17 0.09 10.39 16 4 H -0.02 -1.15 7.43 -2.38 -0.02 -1.17 16 5 C -0.50 -26.39 8.18 25.60 0.21 -26.18 16 6 H 0.05 2.92 7.11 -2.91 -0.02 2.90 16 7 C 0.01 0.60 5.29 84.66 0.45 1.04 16 8 N -0.92 -51.67 11.29 21.45 0.24 -51.43 16 9 Si 0.94 44.06 29.54 68.60 2.03 46.08 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 N -0.67 -24.10 6.13 -467.91 -2.87 -26.97 16 14 C 0.09 2.82 3.43 45.98 0.16 2.97 16 15 H 0.05 1.69 7.51 -2.39 -0.02 1.67 16 16 C -0.13 -4.96 5.63 30.59 0.17 -4.78 16 17 C 0.51 18.25 8.03 87.90 0.71 18.96 16 18 O -0.59 -24.89 17.35 -3.04 -0.05 -24.94 16 19 N -0.62 -16.26 3.33 -842.76 -2.81 -19.07 16 20 C 0.09 1.66 11.14 127.77 1.42 3.09 16 21 C 0.11 2.53 6.85 86.82 0.59 3.13 16 22 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.74 6.42 -2.38 -0.02 1.72 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 3.32 5.94 -2.39 -0.01 3.30 16 27 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 28 H 0.34 10.14 6.23 -89.69 -0.56 9.58 16 29 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 30 H 0.10 4.03 7.69 -2.38 -0.02 4.01 16 31 H 0.07 1.47 7.53 -2.39 -0.02 1.45 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.92 8.07 -2.39 -0.02 1.90 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -64.99 283.88 1.72 -63.27 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.51 Total: 13.56 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 4.67 Total: -0.50 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -5.43 Total: -97.47 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.05 Total: -24.94 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -64.99 1.72 -63.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379597858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.825 kcal (2) G-P(sol) polarization free energy of solvation -64.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds