Wall clock time and date at job start Mon Mar 30 2020 02:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46809 * 2 1 4 4 H 1.09006 * 109.46937 * 176.77742 * 3 2 1 5 5 C 1.50694 * 109.47878 * 56.77253 * 3 2 1 6 6 H 1.08001 * 119.99962 * 240.00578 * 5 3 2 7 7 C 1.37876 * 120.00023 * 59.99322 * 5 3 2 8 8 N 1.31516 * 119.99755 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00269 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46827 * 60.00138 * 9 7 5 11 11 H 1.48490 * 109.47148 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46952 * 300.00733 * 9 7 5 13 13 N 1.46906 * 109.46993 * 296.76890 * 3 2 1 14 14 C 1.46899 * 110.99997 * 275.15131 * 13 3 2 15 15 H 1.09006 * 110.88536 * 38.38188 * 14 13 3 16 16 C 1.54623 * 110.97162 * 274.56755 * 14 13 3 17 17 C 1.51284 * 104.31178 * 266.74464 * 16 14 13 18 18 O 1.21281 * 124.94196 * 163.71001 * 17 16 14 19 19 N 1.34422 * 110.11601 * 343.68410 * 17 16 14 20 20 C 1.46496 * 124.34910 * 179.61160 * 19 17 16 21 21 C 1.46758 * 111.29898 * 359.58848 * 19 17 16 22 22 H 1.09007 * 109.47236 * 174.65770 * 1 2 3 23 23 H 1.08992 * 109.47781 * 294.65764 * 1 2 3 24 24 H 1.09000 * 109.47259 * 54.66419 * 1 2 3 25 25 H 1.08997 * 109.47465 * 239.99484 * 2 1 3 26 26 H 1.09007 * 109.46547 * 119.99317 * 2 1 3 27 27 H 0.97009 * 119.99588 * 179.97438 * 8 7 5 28 28 H 1.00897 * 111.00183 * 151.19909 * 13 3 2 29 29 H 1.08994 * 110.48830 * 148.00280 * 16 14 13 30 30 H 1.09001 * 110.48653 * 25.48686 * 16 14 13 31 31 H 1.08997 * 109.47642 * 359.97438 * 20 19 17 32 32 H 1.09006 * 109.47017 * 119.97240 * 20 19 17 33 33 H 1.09001 * 109.47341 * 239.96644 * 20 19 17 34 34 H 1.09004 * 110.24715 * 136.02345 * 21 19 17 35 35 H 1.09006 * 110.24500 * 257.93199 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1285 1.4431 0.0578 5 6 1.4734 2.1757 1.1884 6 1 0.8590 3.0514 1.0400 7 6 1.7393 1.7285 2.4652 8 7 2.4877 0.6622 2.6460 9 14 1.0364 2.6369 3.9384 10 1 -0.4465 2.6357 3.8594 11 1 1.4665 1.9605 5.1884 12 1 1.5309 4.0372 3.9385 13 7 1.6150 2.1121 -1.2366 14 6 2.5563 1.8423 -2.3316 15 1 2.9143 0.8134 -2.2917 16 6 3.7370 2.8404 -2.3050 17 6 3.3061 3.9542 -3.2337 18 8 3.8118 5.0556 -3.2790 19 7 2.2815 3.5453 -4.0017 20 6 1.6169 4.3796 -5.0060 21 6 1.9145 2.1556 -3.7053 22 1 -0.3634 -1.0233 -0.0957 23 1 -0.3634 0.4287 0.9339 24 1 -0.3634 0.5944 -0.8383 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.6750 0.3478 3.5443 28 1 1.5046 3.1043 -1.0910 29 1 4.6460 2.3660 -2.6744 30 1 3.8904 3.2230 -1.2959 31 1 2.0819 5.3652 -5.0250 32 1 1.7130 3.9135 -5.9867 33 1 0.5613 4.4806 -4.7536 34 1 0.8306 2.0560 -3.6463 35 1 2.3128 1.4889 -4.4703 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379597860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:43 Heat of formation + Delta-G solvation = -36.767874 kcal Electronic energy + Delta-G solvation = -16264.487215 eV Core-core repulsion = 13683.209201 eV Total energy + Delta-G solvation = -2581.278014 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.16042 -36.84988 -35.41372 -33.06879 -31.27771 -29.46541 -27.29818 -26.40257 -25.29435 -23.25094 -21.08596 -19.33390 -18.98113 -16.77018 -16.12294 -16.08129 -15.18720 -14.83456 -14.02439 -13.80251 -13.61866 -13.33577 -13.02470 -12.50742 -12.28590 -12.09253 -11.91922 -11.77762 -11.31723 -11.14832 -10.92032 -10.72910 -10.41486 -10.15700 -9.78990 -9.54464 -9.42622 -8.85919 -8.55332 -8.51044 -7.41289 -6.05980 -4.11186 2.82824 3.23758 3.29706 3.34394 3.37408 4.37019 4.65128 4.77295 5.09692 5.23749 5.27527 5.35656 5.44317 5.69718 5.72579 5.76582 5.87987 6.13561 6.29784 6.47143 6.64698 6.67882 6.80181 7.16572 7.21680 7.28062 7.43506 7.68096 7.73738 7.78031 8.16573 8.28581 8.39794 8.55430 8.95833 9.53856 11.00070 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.032551 B = 0.007570 C = 0.006902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.971434 B = 3698.088102 C = 4055.588878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.216 3.784 4 H 0.005 0.995 5 C -0.515 4.515 6 H 0.058 0.942 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.673 5.673 14 C 0.081 3.919 15 H 0.101 0.899 16 C -0.189 4.189 17 C 0.520 3.480 18 O -0.546 6.546 19 N -0.623 5.623 20 C 0.095 3.905 21 C 0.107 3.893 22 H 0.012 0.988 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.011 0.989 26 H 0.085 0.915 27 H 0.262 0.738 28 H 0.334 0.666 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.380 0.301 -11.296 11.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.023 0.977 5 C -0.554 4.554 6 H 0.076 0.924 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.303 5.303 14 C -0.031 4.031 15 H 0.119 0.881 16 C -0.231 4.231 17 C 0.309 3.691 18 O -0.424 6.424 19 N -0.358 5.358 20 C -0.047 4.047 21 C -0.016 4.016 22 H 0.032 0.968 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.030 0.970 26 H 0.104 0.896 27 H 0.071 0.929 28 H 0.152 0.848 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.531 0.291 -11.390 11.496 hybrid contribution 0.342 0.938 1.070 1.463 sum -1.189 1.229 -10.319 10.460 Atomic orbital electron populations 1.21440 0.97456 0.97125 1.01628 1.21442 0.95181 0.98061 0.99361 1.19153 0.93772 0.91644 0.84571 0.97740 1.21105 1.31878 1.12048 0.90368 0.92403 1.24852 0.95026 0.94977 0.98783 1.69871 1.37576 1.23234 1.21974 0.86648 0.79542 0.79876 0.81901 1.20216 1.21312 1.20347 1.60743 1.45946 1.15955 1.07637 1.22597 0.89873 0.98852 0.91815 0.88091 1.23170 1.01445 0.97177 1.01343 1.21022 0.79075 0.88270 0.80773 1.90671 1.58597 1.23128 1.69984 1.48179 1.34687 1.14468 1.38438 1.21490 0.97397 0.95440 0.90407 1.22372 1.01851 0.80806 0.96580 0.96842 0.92877 0.93547 0.97029 0.89636 0.92854 0.84779 0.88254 0.87559 0.90368 0.92501 0.92120 0.89382 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.44 37.16 0.35 -2.18 16 2 C -0.10 -2.30 5.55 -26.73 -0.15 -2.45 16 3 C 0.22 4.97 2.14 -68.87 -0.15 4.82 16 4 H 0.00 0.12 7.60 -51.93 -0.39 -0.27 16 5 C -0.52 -13.32 7.28 -34.44 -0.25 -13.57 16 6 H 0.06 1.50 7.62 -52.49 -0.40 1.10 16 7 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -24.33 11.35 55.43 0.63 -23.70 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.67 -12.84 5.39 -99.05 -0.53 -13.37 16 14 C 0.08 1.26 3.23 -65.89 -0.21 1.05 16 15 H 0.10 1.55 7.22 -51.93 -0.37 1.17 16 16 C -0.19 -3.01 6.16 -26.74 -0.16 -3.18 16 17 C 0.52 8.89 8.03 -10.86 -0.09 8.81 16 18 O -0.55 -11.22 17.35 5.56 0.10 -11.12 16 19 N -0.62 -8.81 3.33 -180.06 -0.60 -9.41 16 20 C 0.09 1.08 11.14 59.84 0.67 1.74 16 21 C 0.11 1.38 7.09 -2.94 -0.02 1.36 16 22 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 23 H 0.05 1.24 7.33 -51.93 -0.38 0.86 16 24 H 0.05 0.94 7.55 -51.93 -0.39 0.55 16 25 H 0.01 0.23 7.39 -51.93 -0.38 -0.16 16 26 H 0.09 2.18 6.16 -51.92 -0.32 1.86 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.33 6.69 8.04 -39.29 -0.32 6.38 16 29 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.11 1.93 7.91 -51.93 -0.41 1.52 16 31 H 0.08 0.96 7.53 -51.93 -0.39 0.57 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 285.10 15.07 4.30 4.30 Total: -1.00 -28.94 285.10 -6.67 -35.62 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.43 Total: 3.77 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.11 Total: -1.94 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.50 Total: -46.48 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.10 Total: -11.12 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.94 -6.67 -35.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379597860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.151 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds