Wall clock time and date at job start Mon Mar 30 2020 02:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46809 * 2 1 4 4 H 1.09006 * 109.46937 * 176.77742 * 3 2 1 5 5 C 1.50694 * 109.47878 * 56.77253 * 3 2 1 6 6 H 1.08001 * 119.99962 * 240.00578 * 5 3 2 7 7 C 1.37876 * 120.00023 * 59.99322 * 5 3 2 8 8 N 1.31516 * 119.99755 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00269 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46827 * 60.00138 * 9 7 5 11 11 H 1.48490 * 109.47148 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46952 * 300.00733 * 9 7 5 13 13 N 1.46906 * 109.46993 * 296.76890 * 3 2 1 14 14 C 1.46899 * 110.99997 * 275.15131 * 13 3 2 15 15 H 1.09006 * 110.88536 * 38.38188 * 14 13 3 16 16 C 1.54623 * 110.97162 * 274.56755 * 14 13 3 17 17 C 1.51284 * 104.31178 * 266.74464 * 16 14 13 18 18 O 1.21281 * 124.94196 * 163.71001 * 17 16 14 19 19 N 1.34422 * 110.11601 * 343.68410 * 17 16 14 20 20 C 1.46496 * 124.34910 * 179.61160 * 19 17 16 21 21 C 1.46758 * 111.29898 * 359.58848 * 19 17 16 22 22 H 1.09007 * 109.47236 * 174.65770 * 1 2 3 23 23 H 1.08992 * 109.47781 * 294.65764 * 1 2 3 24 24 H 1.09000 * 109.47259 * 54.66419 * 1 2 3 25 25 H 1.08997 * 109.47465 * 239.99484 * 2 1 3 26 26 H 1.09007 * 109.46547 * 119.99317 * 2 1 3 27 27 H 0.97009 * 119.99588 * 179.97438 * 8 7 5 28 28 H 1.00897 * 111.00183 * 151.19909 * 13 3 2 29 29 H 1.08994 * 110.48830 * 148.00280 * 16 14 13 30 30 H 1.09001 * 110.48653 * 25.48686 * 16 14 13 31 31 H 1.08997 * 109.47642 * 359.97438 * 20 19 17 32 32 H 1.09006 * 109.47017 * 119.97240 * 20 19 17 33 33 H 1.09001 * 109.47341 * 239.96644 * 20 19 17 34 34 H 1.09004 * 110.24715 * 136.02345 * 21 19 17 35 35 H 1.09006 * 110.24500 * 257.93199 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1285 1.4431 0.0578 5 6 1.4734 2.1757 1.1884 6 1 0.8590 3.0514 1.0400 7 6 1.7393 1.7285 2.4652 8 7 2.4877 0.6622 2.6460 9 14 1.0364 2.6369 3.9384 10 1 -0.4465 2.6357 3.8594 11 1 1.4665 1.9605 5.1884 12 1 1.5309 4.0372 3.9385 13 7 1.6150 2.1121 -1.2366 14 6 2.5563 1.8423 -2.3316 15 1 2.9143 0.8134 -2.2917 16 6 3.7370 2.8404 -2.3050 17 6 3.3061 3.9542 -3.2337 18 8 3.8118 5.0556 -3.2790 19 7 2.2815 3.5453 -4.0017 20 6 1.6169 4.3796 -5.0060 21 6 1.9145 2.1556 -3.7053 22 1 -0.3634 -1.0233 -0.0957 23 1 -0.3634 0.4287 0.9339 24 1 -0.3634 0.5944 -0.8383 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.6750 0.3478 3.5443 28 1 1.5046 3.1043 -1.0910 29 1 4.6460 2.3660 -2.6744 30 1 3.8904 3.2230 -1.2959 31 1 2.0819 5.3652 -5.0250 32 1 1.7130 3.9135 -5.9867 33 1 0.5613 4.4806 -4.7536 34 1 0.8306 2.0560 -3.6463 35 1 2.3128 1.4889 -4.4703 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379597860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:43 Heat of formation + Delta-G solvation = -56.356949 kcal Electronic energy + Delta-G solvation = -16265.336661 eV Core-core repulsion = 13683.209201 eV Total energy + Delta-G solvation = -2582.127460 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.43582 -38.38348 -36.93103 -34.62885 -33.03490 -30.96575 -28.62300 -27.84786 -26.72664 -25.05765 -22.47080 -20.78175 -20.48109 -18.44890 -17.55124 -17.42415 -16.71956 -16.42562 -15.62864 -15.30206 -15.13436 -14.53917 -14.48546 -14.01181 -13.86608 -13.39421 -13.24345 -13.14986 -12.80299 -12.78576 -12.54974 -12.38657 -12.24453 -11.92132 -11.53184 -11.23287 -10.93405 -10.74728 -10.50927 -9.68110 -9.03361 -8.08447 -6.18612 1.42132 1.43099 1.49587 1.50870 2.14008 2.43078 3.21143 3.41389 3.45643 3.80270 4.01187 4.35691 4.46571 4.53828 4.71053 4.72599 4.76948 4.87645 4.88220 4.93607 4.97720 5.07573 5.38012 5.46427 5.59202 5.63026 5.74383 5.88546 5.97301 6.07868 6.33066 6.47487 6.78363 7.01589 7.12887 7.49579 8.96048 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.032551 B = 0.007570 C = 0.006902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.971434 B = 3698.088102 C = 4055.588878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.098 4.098 3 C 0.223 3.777 4 H -0.025 1.025 5 C -0.525 4.525 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.665 5.665 14 C 0.078 3.922 15 H 0.110 0.890 16 C -0.184 4.184 17 C 0.512 3.488 18 O -0.590 6.590 19 N -0.616 5.616 20 C 0.089 3.911 21 C 0.117 3.883 22 H 0.034 0.966 23 H 0.024 0.976 24 H 0.057 0.943 25 H 0.034 0.966 26 H 0.054 0.946 27 H 0.260 0.740 28 H 0.327 0.673 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.440 -0.291 -12.954 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.136 4.136 3 C 0.115 3.885 4 H -0.008 1.008 5 C -0.564 4.564 6 H 0.069 0.931 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.771 3.229 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.294 5.294 14 C -0.034 4.034 15 H 0.128 0.872 16 C -0.226 4.226 17 C 0.301 3.699 18 O -0.472 6.472 19 N -0.349 5.349 20 C -0.052 4.052 21 C -0.006 4.006 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.626 -0.321 -13.081 13.346 hybrid contribution 0.668 1.114 1.523 2.002 sum -1.957 0.793 -11.558 11.749 Atomic orbital electron populations 1.21312 0.96265 0.98440 1.00529 1.21312 0.96117 0.97298 0.98891 1.18909 0.91734 0.92275 0.85586 1.00754 1.21414 1.31408 1.11897 0.91670 0.93106 1.25491 0.95498 0.95685 1.01063 1.69990 1.38641 1.24306 1.22193 0.85825 0.79025 0.78713 0.79346 1.19766 1.21102 1.20372 1.60686 1.46870 1.15072 1.06811 1.22727 0.89391 0.99097 0.92144 0.87240 1.23087 1.02718 0.97085 0.99712 1.21160 0.79704 0.87762 0.81285 1.90644 1.60316 1.24769 1.71459 1.48314 1.33441 1.15222 1.37935 1.21720 0.97702 0.94689 0.91066 1.22431 1.02306 0.80466 0.95375 0.94703 0.95649 0.92424 0.94747 0.92794 0.93064 0.85586 0.86141 0.90514 0.91808 0.89425 0.90557 0.88452 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.42 9.44 71.98 0.68 -3.74 16 2 C -0.10 -4.32 5.55 30.59 0.17 -4.15 16 3 C 0.22 10.29 2.14 44.16 0.09 10.39 16 4 H -0.03 -1.30 7.60 -2.38 -0.02 -1.31 16 5 C -0.53 -27.40 7.28 25.60 0.19 -27.22 16 6 H 0.05 2.66 7.62 -2.91 -0.02 2.64 16 7 C 0.02 1.19 5.30 84.65 0.45 1.64 16 8 N -0.91 -50.75 11.35 21.45 0.24 -50.50 16 9 Si 0.94 43.12 29.54 68.60 2.03 45.14 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 N -0.67 -24.68 5.39 -467.28 -2.52 -27.20 16 14 C 0.08 2.27 3.23 46.09 0.15 2.42 16 15 H 0.11 3.05 7.22 -2.38 -0.02 3.03 16 16 C -0.18 -5.74 6.16 30.59 0.19 -5.55 16 17 C 0.51 17.09 8.03 87.90 0.71 17.79 16 18 O -0.59 -24.45 17.35 -3.03 -0.05 -24.50 16 19 N -0.62 -15.83 3.33 -842.18 -2.81 -18.64 16 20 C 0.09 1.77 11.14 127.77 1.42 3.19 16 21 C 0.12 2.55 7.09 86.96 0.62 3.17 16 22 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 23 H 0.02 1.14 7.33 -2.39 -0.02 1.13 16 24 H 0.06 2.20 7.55 -2.39 -0.02 2.18 16 25 H 0.03 1.33 7.39 -2.39 -0.02 1.32 16 26 H 0.05 2.75 6.16 -2.38 -0.01 2.74 16 27 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 28 H 0.33 12.99 8.04 -89.70 -0.72 12.27 16 29 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 30 H 0.08 2.87 7.91 -2.39 -0.02 2.85 16 31 H 0.06 1.48 7.53 -2.39 -0.02 1.46 16 32 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 2.06 8.09 -2.39 -0.02 2.04 16 35 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -63.13 285.10 1.90 -61.22 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.35 Total: 16.54 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 4.66 Total: -2.05 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -5.08 Total: -96.35 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.05 Total: -24.50 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -63.13 1.90 -61.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379597860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.864 kcal (2) G-P(sol) polarization free energy of solvation -63.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds