Wall clock time and date at job start Mon Mar 30 2020 03:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46937 * 2 1 4 4 N 1.46896 * 109.47139 * 179.97438 * 3 2 1 5 5 C 1.46900 * 111.00229 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47483 * 179.97438 * 5 4 3 7 7 O 1.21295 * 119.99694 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00413 * 179.97438 * 6 5 4 9 9 C 1.37087 * 120.00334 * 180.02562 * 8 6 5 10 10 H 1.08005 * 120.00318 * 223.48639 * 9 8 6 11 11 C 1.38950 * 120.00068 * 43.48857 * 9 8 6 12 12 N 1.31405 * 120.00222 * 22.95212 * 11 9 8 13 13 Si 1.86803 * 120.00029 * 202.95534 * 11 9 8 14 14 H 1.48500 * 109.47235 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.47108 * 299.99910 * 13 11 9 16 16 H 1.48503 * 109.46994 * 59.99890 * 13 11 9 17 17 C 1.46508 * 119.99419 * 0.02562 * 8 6 5 18 18 C 1.53002 * 117.49453 * 187.14975 * 17 8 6 19 19 C 1.53004 * 60.00148 * 252.51359 * 18 17 8 20 20 H 1.08992 * 109.47518 * 299.99918 * 1 2 3 21 21 H 1.08999 * 109.47106 * 60.00363 * 1 2 3 22 22 H 1.09002 * 109.46633 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47361 * 240.00431 * 2 1 3 24 24 H 1.08999 * 109.47106 * 119.99636 * 2 1 3 25 25 H 1.09000 * 109.46743 * 60.00052 * 3 2 1 26 26 H 1.09004 * 109.47207 * 300.00149 * 3 2 1 27 27 H 1.00901 * 110.99936 * 56.04687 * 4 3 2 28 28 H 1.09005 * 109.46806 * 60.00067 * 5 4 3 29 29 H 1.09002 * 109.47033 * 300.00378 * 5 4 3 30 30 H 0.97003 * 119.99956 * 6.12342 * 12 11 9 31 31 H 1.08999 * 115.55190 * 332.85938 * 17 8 6 32 32 H 1.08996 * 117.49764 * 0.02562 * 18 17 8 33 33 H 1.08999 * 117.49659 * 145.02224 * 18 17 8 34 34 H 1.08998 * 117.50051 * 252.51877 * 19 18 17 35 35 H 1.09000 * 117.51908 * 107.48332 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0354 2.8140 0.0000 6 6 5.5418 2.7739 0.0013 7 8 6.1200 1.7077 0.0021 8 7 6.2466 3.9227 0.0005 9 6 7.6170 3.8862 0.0012 10 1 8.1747 4.5508 0.6444 11 6 8.2886 2.9942 -0.8258 12 7 7.6974 2.5212 -1.8998 13 14 10.0321 2.4673 -0.4108 14 1 10.5209 1.5173 -1.4423 15 1 10.9153 3.6606 -0.3780 16 1 10.0459 1.8045 0.9180 17 6 5.5481 5.2106 -0.0010 18 6 6.3951 6.4734 -0.1708 19 6 5.7806 6.1417 1.1906 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 3.8709 0.9164 -0.7805 28 1 3.6855 3.3379 0.8896 29 1 3.6862 3.3369 -0.8904 30 1 6.8281 2.8608 -2.1642 31 1 4.5549 5.2062 -0.4501 32 1 7.4719 6.3459 -0.2818 33 1 5.9592 7.3000 -0.7318 34 1 4.9404 6.7501 1.5252 35 1 6.4529 5.7960 1.9758 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379604940.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:15 Heat of formation + Delta-G solvation = -29.032970 kcal Electronic energy + Delta-G solvation = -16003.187619 eV Core-core repulsion = 13422.245016 eV Total energy + Delta-G solvation = -2580.942603 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.70000 -38.16672 -37.25452 -34.97908 -33.71815 -32.68697 -28.87773 -26.48341 -24.62548 -23.21260 -22.95064 -22.28508 -21.16912 -18.71230 -18.11501 -17.26707 -16.65638 -15.98685 -15.64147 -15.55641 -15.28600 -15.20538 -14.59030 -14.26560 -13.67528 -13.43280 -12.94743 -12.81214 -12.68198 -12.53068 -12.31400 -11.98755 -11.92413 -11.89550 -11.76229 -11.63792 -11.33155 -10.67685 -10.07489 -9.38485 -9.31778 -8.54287 -6.05577 1.48126 1.60610 1.76958 2.10079 2.43177 2.80901 3.06462 3.31167 3.34383 3.89253 4.01353 4.05049 4.12984 4.17682 4.28311 4.33370 4.44899 4.55221 4.65333 4.75254 4.81279 4.89013 4.93602 5.17643 5.17826 5.27985 5.38764 5.40009 5.72520 5.99435 6.18360 6.29286 6.87031 7.16971 7.53167 8.15279 8.70503 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.025923 B = 0.007875 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.855144 B = 3554.642506 C = 4407.997885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C 0.061 3.939 4 N -0.690 5.690 5 C 0.066 3.934 6 C 0.446 3.554 7 O -0.580 6.580 8 N -0.450 5.450 9 C -0.433 4.433 10 H 0.066 0.934 11 C -0.009 4.009 12 N -0.878 5.878 13 Si 1.115 2.885 14 H -0.287 1.287 15 H -0.256 1.256 16 H -0.288 1.288 17 C 0.037 3.963 18 C -0.170 4.170 19 C -0.177 4.177 20 H 0.062 0.938 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.036 0.964 27 H 0.338 0.662 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.253 0.747 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.130 4.361 2.895 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C -0.068 4.068 4 N -0.322 5.322 5 C -0.066 4.066 6 C 0.235 3.765 7 O -0.461 6.461 8 N -0.172 5.172 9 C -0.560 4.560 10 H 0.083 0.917 11 C -0.215 4.215 12 N -0.511 5.511 13 Si 0.937 3.063 14 H -0.212 1.212 15 H -0.181 1.181 16 H -0.215 1.215 17 C -0.068 4.068 18 C -0.207 4.207 19 C -0.215 4.215 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.156 0.844 28 H 0.123 0.877 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.149 0.851 32 H 0.096 0.904 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.579 2.766 3.097 11.365 hybrid contribution -1.159 1.168 -0.540 1.732 sum -11.738 3.933 2.556 12.641 Atomic orbital electron populations 1.21678 0.93499 1.02488 1.02369 1.21487 0.97065 0.95399 1.01986 1.22116 0.85505 0.98149 1.00982 1.60152 1.08417 1.12527 1.51149 1.21619 0.91155 0.91567 1.02258 1.21068 0.90203 0.84243 0.80965 1.90567 1.72388 1.30683 1.52477 1.43216 1.05103 1.03164 1.65699 1.19877 0.81703 1.27906 1.26492 0.91674 1.27424 1.08407 0.94258 0.91367 1.70696 1.16364 1.41962 1.22036 0.82954 0.70710 0.77056 0.75612 1.21229 1.18074 1.21472 1.22135 0.97628 0.82784 1.04248 1.23117 0.99763 0.97668 1.00173 1.23281 1.03787 1.03026 0.91434 0.91927 0.92230 0.91702 0.92734 0.92185 0.90279 0.94628 0.84367 0.87724 0.92601 0.93792 0.85144 0.90400 0.86149 0.85396 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.91 71.98 0.71 -1.75 16 2 C -0.12 -2.86 6.19 30.60 0.19 -2.67 16 3 C 0.06 1.61 5.69 86.31 0.49 2.11 16 4 N -0.69 -25.35 6.13 -517.93 -3.17 -28.52 16 5 C 0.07 2.53 4.74 85.56 0.41 2.94 16 6 C 0.45 23.05 6.47 87.66 0.57 23.61 16 7 O -0.58 -35.89 14.06 -3.07 -0.04 -35.93 16 8 N -0.45 -22.77 2.60 -613.11 -1.59 -24.36 16 9 C -0.43 -24.52 7.76 84.04 0.65 -23.87 16 10 H 0.07 3.64 7.43 -2.91 -0.02 3.61 16 11 C -0.01 -0.50 4.22 84.93 0.36 -0.15 16 12 N -0.88 -55.47 12.35 21.66 0.27 -55.21 16 13 Si 1.11 53.40 29.98 68.60 2.06 55.46 16 14 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 15 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 16 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 17 C 0.04 1.40 5.96 44.99 0.27 1.67 16 18 C -0.17 -5.81 9.81 30.60 0.30 -5.51 16 19 C -0.18 -5.62 10.30 30.60 0.32 -5.31 16 20 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.34 13.64 8.43 -89.69 -0.76 12.89 16 28 H 0.10 3.52 8.11 -2.38 -0.02 3.50 16 29 H 0.06 1.92 7.57 -2.39 -0.02 1.90 16 30 H 0.25 16.19 7.42 -92.71 -0.69 15.50 16 31 H 0.13 4.16 6.84 -2.39 -0.02 4.14 16 32 H 0.08 3.16 6.82 -2.39 -0.02 3.15 16 33 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 34 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -74.03 291.52 2.16 -71.86 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.39 Total: 25.62 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 4.26 Total: -8.92 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -4.50 Total: -108.09 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.04 Total: -35.93 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 2.06 Total: 55.46 kcal Total: -74.03 2.16 -71.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379604940.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.830 kcal (2) G-P(sol) polarization free energy of solvation -74.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds