Wall clock time and date at job start Mon Mar 30 2020 02:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47201 * 2 1 4 4 H 1.09001 * 109.47371 * 305.00081 * 3 2 1 5 5 C 1.50701 * 109.47142 * 185.00007 * 3 2 1 6 6 H 1.08001 * 119.99525 * 240.00097 * 5 3 2 7 7 C 1.37875 * 119.99860 * 60.00052 * 5 3 2 8 8 N 1.31505 * 120.00324 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99863 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47193 * 59.99772 * 9 7 5 11 11 H 1.48496 * 109.47344 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46658 * 299.99867 * 9 7 5 13 13 N 1.46898 * 109.47026 * 64.99727 * 3 2 1 14 14 C 1.47480 * 111.00405 * 275.97305 * 13 3 2 15 15 C 1.53515 * 87.93275 * 221.29694 * 14 13 3 16 16 C 1.53002 * 114.17073 * 139.66656 * 15 14 13 17 17 C 1.50700 * 109.46816 * 91.16039 * 16 15 14 18 18 N 1.34783 * 119.99779 * 180.02562 * 17 16 15 19 19 O 1.21272 * 120.00207 * 359.97438 * 17 16 15 20 20 C 1.47486 * 110.99952 * 179.97438 * 13 3 2 21 21 H 1.09003 * 109.46496 * 59.99997 * 1 2 3 22 22 H 1.08990 * 109.47070 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46898 * 300.00513 * 1 2 3 24 24 H 1.09002 * 109.47028 * 240.00218 * 2 1 3 25 25 H 1.08992 * 109.46920 * 119.99812 * 2 1 3 26 26 H 0.97001 * 120.00628 * 180.02562 * 8 7 5 27 27 H 1.09005 * 113.47310 * 336.06042 * 14 13 3 28 28 H 1.08990 * 113.48150 * 106.52863 * 14 13 3 29 29 H 1.08994 * 114.17159 * 272.37520 * 15 14 13 30 30 H 1.09004 * 109.46989 * 211.15850 * 16 15 14 31 31 H 1.09000 * 109.47486 * 331.16057 * 16 15 14 32 32 H 0.96995 * 119.99971 * 359.97438 * 18 17 16 33 33 H 0.96997 * 119.99635 * 180.02562 * 18 17 16 34 34 H 1.09005 * 113.47586 * 253.47470 * 20 13 3 35 35 H 1.08997 * 113.47701 * 23.87649 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1728 9 14 6.0051 0.8800 -1.3811 10 1 6.5967 0.1452 -0.2343 11 1 6.3980 0.2156 -2.6498 12 1 6.5005 2.2799 -1.3808 13 7 1.6514 2.0993 1.2552 14 6 0.2774 2.6287 1.1714 15 6 0.7748 3.8816 1.9059 16 6 0.1955 5.1928 1.3710 17 6 -1.0623 5.5321 2.1285 18 7 -1.7494 6.6517 1.8267 19 8 -1.4567 4.7975 3.0091 20 6 2.1277 3.4946 1.2911 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.8293 -0.0619 -2.9495 27 1 -0.0506 2.8253 0.1506 28 1 -0.4470 2.0490 1.7433 29 1 0.7405 3.8049 2.9926 30 1 0.9250 5.9922 1.5013 31 1 -0.0369 5.0820 0.3119 32 1 -1.4341 7.2391 1.1221 33 1 -2.5587 6.8703 2.3145 34 1 2.9709 3.6484 1.9646 35 1 2.2947 3.9221 0.3025 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382243054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:00 Heat of formation + Delta-G solvation = -14.114468 kcal Electronic energy + Delta-G solvation = -16071.730384 eV Core-core repulsion = 13491.434696 eV Total energy + Delta-G solvation = -2580.295688 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.96595 -38.69450 -34.22059 -33.65912 -31.69699 -30.40327 -27.60109 -25.11908 -24.36037 -22.53568 -20.63358 -19.31193 -18.85811 -17.37846 -16.52457 -16.28270 -15.53841 -15.02637 -14.62150 -14.02763 -13.72449 -13.19744 -12.63942 -12.46344 -11.98420 -11.83460 -11.52830 -11.37310 -10.99599 -10.90380 -10.63695 -10.57733 -10.03622 -9.99897 -9.73171 -9.61806 -9.53875 -9.12631 -8.71678 -8.42667 -7.65434 -6.00467 -4.06122 2.71015 3.31715 3.36346 3.39573 3.54673 4.41434 4.81462 4.92633 5.12100 5.29533 5.35008 5.70151 5.73526 5.95721 6.20279 6.23418 6.31956 6.40500 6.44859 6.54797 6.65683 6.71900 6.85487 6.87182 7.08019 7.18142 7.29302 7.52427 7.60042 7.83624 8.13000 8.28888 8.36309 8.52579 9.00462 9.58774 11.05381 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.036773 B = 0.006751 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.237465 B = 4146.424372 C = 4599.027568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C 0.186 3.814 4 H 0.006 0.994 5 C -0.507 4.507 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.467 5.467 14 C 0.008 3.992 15 C -0.114 4.114 16 C -0.132 4.132 17 C 0.517 3.483 18 N -0.864 5.864 19 O -0.539 6.539 20 C 0.025 3.975 21 H 0.037 0.963 22 H 0.031 0.969 23 H 0.049 0.951 24 H 0.093 0.907 25 H 0.039 0.961 26 H 0.261 0.739 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.400 0.600 33 H 0.397 0.603 34 H 0.070 0.930 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.069 11.140 3.332 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C 0.079 3.921 4 H 0.024 0.976 5 C -0.546 4.546 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.189 5.189 14 C -0.121 4.121 15 C -0.133 4.133 16 C -0.172 4.172 17 C 0.303 3.697 18 N -0.428 5.428 19 O -0.415 6.415 20 C -0.105 4.105 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.068 0.932 24 H 0.111 0.889 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.228 0.772 33 H 0.227 0.773 34 H 0.089 0.911 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.925 9.908 4.174 12.788 hybrid contribution 0.587 0.860 -1.192 1.583 sum -6.338 10.767 2.982 12.845 Atomic orbital electron populations 1.22042 0.99597 0.99265 1.00264 1.21508 0.91468 0.99402 1.02388 1.19800 0.95540 0.91841 0.84910 0.97621 1.21101 0.90943 1.37602 1.04926 0.92198 1.24927 0.98191 0.95265 0.95701 1.69872 1.34931 1.38678 1.09581 0.86603 0.85624 0.78169 0.77263 1.20215 1.21357 1.20367 1.68901 1.02218 1.11339 1.36484 1.23860 0.95335 0.94562 0.98374 1.22731 0.97514 0.91870 1.01173 1.21706 0.94567 1.00297 1.00652 1.20900 0.85595 0.80066 0.83181 1.43973 1.30416 1.26548 1.41830 1.90737 1.69349 1.49387 1.32008 1.23509 0.95443 0.91864 0.99665 0.94399 0.95032 0.93226 0.88874 0.94207 0.92921 0.92607 0.90788 0.87874 0.88721 0.88804 0.77227 0.77343 0.91116 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.14 37.16 0.34 -2.92 16 2 C -0.11 -2.72 5.45 -26.73 -0.15 -2.86 16 3 C 0.19 4.72 1.37 -68.86 -0.09 4.62 16 4 H 0.01 0.17 7.52 -51.93 -0.39 -0.22 16 5 C -0.51 -13.93 8.08 -34.44 -0.28 -14.20 16 6 H 0.06 1.65 7.43 -52.49 -0.39 1.26 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.57 16 8 N -0.89 -25.34 11.29 55.43 0.63 -24.71 16 9 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 N -0.47 -10.35 6.10 -237.78 -1.45 -11.80 16 14 C 0.01 0.15 5.13 -7.48 -0.04 0.11 16 15 C -0.11 -1.86 3.51 -90.06 -0.32 -2.18 16 16 C -0.13 -1.62 5.61 -27.88 -0.16 -1.77 16 17 C 0.52 6.62 8.10 -10.98 -0.09 6.53 16 18 N -0.86 -7.06 8.87 31.22 0.28 -6.78 16 19 O -0.54 -9.35 16.57 5.56 0.09 -9.26 16 20 C 0.02 0.47 6.21 -7.45 -0.05 0.42 16 21 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 1.00 5.09 -51.93 -0.26 0.73 16 24 H 0.09 2.55 5.95 -51.93 -0.31 2.24 16 25 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.06 1.06 7.27 -51.93 -0.38 0.68 16 28 H 0.07 1.43 6.80 -51.93 -0.35 1.08 16 29 H 0.10 1.80 7.63 -51.93 -0.40 1.40 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.07 7.81 -51.93 -0.41 0.67 16 32 H 0.40 2.02 8.83 -40.82 -0.36 1.66 16 33 H 0.40 2.85 8.93 -40.82 -0.36 2.48 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.27 7.85 -51.93 -0.41 0.87 16 LS Contribution 281.70 15.07 4.25 4.25 Total: -1.00 -31.81 281.70 -7.42 -39.23 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.27 Total: 3.49 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -0.92 Total: -10.69 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.55 Total: -43.29 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.81 -7.42 -39.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382243054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.115 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds