Wall clock time and date at job start Mon Mar 30 2020 02:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47201 * 2 1 4 4 H 1.09001 * 109.47371 * 305.00081 * 3 2 1 5 5 C 1.50701 * 109.47142 * 185.00007 * 3 2 1 6 6 H 1.08001 * 119.99525 * 240.00097 * 5 3 2 7 7 C 1.37875 * 119.99860 * 60.00052 * 5 3 2 8 8 N 1.31505 * 120.00324 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99863 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47193 * 59.99772 * 9 7 5 11 11 H 1.48496 * 109.47344 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46658 * 299.99867 * 9 7 5 13 13 N 1.46898 * 109.47026 * 64.99727 * 3 2 1 14 14 C 1.47480 * 111.00405 * 275.97305 * 13 3 2 15 15 C 1.53515 * 87.93275 * 221.29694 * 14 13 3 16 16 C 1.53002 * 114.17073 * 139.66656 * 15 14 13 17 17 C 1.50700 * 109.46816 * 91.16039 * 16 15 14 18 18 N 1.34783 * 119.99779 * 180.02562 * 17 16 15 19 19 O 1.21272 * 120.00207 * 359.97438 * 17 16 15 20 20 C 1.47486 * 110.99952 * 179.97438 * 13 3 2 21 21 H 1.09003 * 109.46496 * 59.99997 * 1 2 3 22 22 H 1.08990 * 109.47070 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46898 * 300.00513 * 1 2 3 24 24 H 1.09002 * 109.47028 * 240.00218 * 2 1 3 25 25 H 1.08992 * 109.46920 * 119.99812 * 2 1 3 26 26 H 0.97001 * 120.00628 * 180.02562 * 8 7 5 27 27 H 1.09005 * 113.47310 * 336.06042 * 14 13 3 28 28 H 1.08990 * 113.48150 * 106.52863 * 14 13 3 29 29 H 1.08994 * 114.17159 * 272.37520 * 15 14 13 30 30 H 1.09004 * 109.46989 * 211.15850 * 16 15 14 31 31 H 1.09000 * 109.47486 * 331.16057 * 16 15 14 32 32 H 0.96995 * 119.99971 * 359.97438 * 18 17 16 33 33 H 0.96997 * 119.99635 * 180.02562 * 18 17 16 34 34 H 1.09005 * 113.47586 * 253.47470 * 20 13 3 35 35 H 1.08997 * 113.47701 * 23.87649 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1728 9 14 6.0051 0.8800 -1.3811 10 1 6.5967 0.1452 -0.2343 11 1 6.3980 0.2156 -2.6498 12 1 6.5005 2.2799 -1.3808 13 7 1.6514 2.0993 1.2552 14 6 0.2774 2.6287 1.1714 15 6 0.7748 3.8816 1.9059 16 6 0.1955 5.1928 1.3710 17 6 -1.0623 5.5321 2.1285 18 7 -1.7494 6.6517 1.8267 19 8 -1.4567 4.7975 3.0091 20 6 2.1277 3.4946 1.2911 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.8293 -0.0619 -2.9495 27 1 -0.0506 2.8253 0.1506 28 1 -0.4470 2.0490 1.7433 29 1 0.7405 3.8049 2.9926 30 1 0.9250 5.9922 1.5013 31 1 -0.0369 5.0820 0.3119 32 1 -1.4341 7.2391 1.1221 33 1 -2.5587 6.8703 2.3145 34 1 2.9709 3.6484 1.9646 35 1 2.2947 3.9221 0.3025 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382243054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:00 Heat of formation + Delta-G solvation = -39.823365 kcal Electronic energy + Delta-G solvation = -16072.845205 eV Core-core repulsion = 13491.434696 eV Total energy + Delta-G solvation = -2581.410510 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.35753 -39.94457 -36.09340 -34.57094 -33.63696 -31.80748 -29.37313 -26.68744 -26.11804 -24.28001 -21.83934 -21.06924 -20.26753 -18.54325 -18.09258 -17.53656 -17.06664 -16.61259 -16.04231 -15.65443 -15.21652 -14.73829 -14.27358 -13.96464 -13.73092 -13.33548 -13.19362 -13.00076 -12.82397 -12.69420 -12.36496 -12.19530 -11.92783 -11.51755 -11.36458 -10.92172 -10.88257 -10.62961 -10.56033 -10.48562 -9.42243 -8.10293 -6.23249 1.41918 1.44288 1.51568 1.73961 2.42640 2.68863 3.16637 3.46313 3.59115 3.98619 4.12683 4.48071 4.51943 4.56591 4.62274 4.69163 4.72870 4.77672 4.87471 4.91737 5.01292 5.10180 5.23089 5.32296 5.46812 5.58553 5.61783 5.75584 5.99103 6.15657 6.35150 6.55289 6.61339 6.91010 7.45159 7.45734 8.94438 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.036773 B = 0.006751 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.237465 B = 4146.424372 C = 4599.027568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C 0.194 3.806 4 H -0.020 1.020 5 C -0.525 4.525 6 H 0.053 0.947 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.268 1.268 13 N -0.489 5.489 14 C 0.009 3.991 15 C -0.090 4.090 16 C -0.126 4.126 17 C 0.517 3.483 18 N -0.839 5.839 19 O -0.592 6.592 20 C 0.024 3.976 21 H 0.038 0.962 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.025 0.975 26 H 0.262 0.738 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.418 0.582 33 H 0.405 0.595 34 H 0.070 0.930 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 12.799 3.357 15.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 C 0.086 3.914 4 H -0.002 1.002 5 C -0.563 4.563 6 H 0.071 0.929 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.212 5.212 14 C -0.120 4.120 15 C -0.109 4.109 16 C -0.166 4.166 17 C 0.303 3.697 18 N -0.403 5.403 19 O -0.472 6.472 20 C -0.105 4.105 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.145 0.855 31 H 0.126 0.874 32 H 0.250 0.750 33 H 0.237 0.763 34 H 0.089 0.911 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.079 11.627 4.179 14.239 hybrid contribution 0.602 0.381 -1.193 1.389 sum -6.477 12.008 2.986 13.966 Atomic orbital electron populations 1.21898 0.96686 1.00635 1.00716 1.21383 0.94108 0.98874 1.00204 1.19582 0.94416 0.91952 0.85461 1.00235 1.21371 0.92272 1.37752 1.04927 0.92892 1.25679 1.02526 0.94855 0.95377 1.69999 1.36577 1.39117 1.09932 0.85620 0.80369 0.78526 0.77160 1.20165 1.20881 1.19333 1.68839 1.04517 1.13304 1.34541 1.23851 0.93624 0.95796 0.98769 1.22478 0.95088 0.93081 1.00282 1.21649 0.95167 0.98813 1.00973 1.20912 0.85736 0.80573 0.82489 1.43726 1.29859 1.25127 1.41588 1.90729 1.70674 1.51405 1.34394 1.23521 0.97036 0.90257 0.99720 0.94325 0.93230 0.92283 0.91636 0.95601 0.92908 0.92475 0.91257 0.88784 0.85546 0.87426 0.75041 0.76346 0.91105 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.95 9.14 71.98 0.66 -5.30 16 2 C -0.11 -5.43 5.45 30.60 0.17 -5.27 16 3 C 0.19 9.98 1.37 44.17 0.06 10.04 16 4 H -0.02 -1.11 7.52 -2.39 -0.02 -1.12 16 5 C -0.52 -29.20 8.08 25.60 0.21 -28.99 16 6 H 0.05 2.95 7.43 -2.91 -0.02 2.92 16 7 C 0.01 0.81 5.29 84.66 0.45 1.26 16 8 N -0.92 -52.81 11.29 21.45 0.24 -52.57 16 9 Si 0.96 43.72 29.54 68.60 2.03 45.74 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 13 N -0.49 -21.80 6.10 -906.21 -5.53 -27.32 16 14 C 0.01 0.32 5.13 83.62 0.43 0.75 16 15 C -0.09 -2.84 3.51 -10.43 -0.04 -2.87 16 16 C -0.13 -2.74 5.61 29.85 0.17 -2.58 16 17 C 0.52 12.00 8.10 87.66 0.71 12.71 16 18 N -0.84 -11.05 8.87 -173.53 -1.54 -12.59 16 19 O -0.59 -19.83 16.57 -3.01 -0.05 -19.88 16 20 C 0.02 0.90 6.21 83.63 0.52 1.42 16 21 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.06 2.35 5.09 -2.39 -0.01 2.33 16 24 H 0.07 3.68 5.95 -2.39 -0.01 3.67 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.06 2.13 7.27 -2.38 -0.02 2.11 16 28 H 0.07 2.65 6.80 -2.39 -0.02 2.63 16 29 H 0.09 3.19 7.63 -2.39 -0.02 3.18 16 30 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.11 2.12 7.81 -2.39 -0.02 2.10 16 32 H 0.42 2.61 8.83 -92.71 -0.82 1.79 16 33 H 0.41 4.64 8.93 -92.71 -0.83 3.81 16 34 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 35 H 0.06 2.36 7.85 -2.39 -0.02 2.34 16 Total: -1.00 -69.52 281.70 -2.07 -71.59 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -0.55 Total: 13.87 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 3.33 Total: -18.84 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -6.82 Total: -92.48 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.05 Total: -19.88 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -69.52 -2.07 -71.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382243054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.765 kcal (2) G-P(sol) polarization free energy of solvation -69.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds