Wall clock time and date at job start Mon Mar 30 2020 03:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46965 * 2 1 4 4 N 1.46500 * 109.47452 * 119.99896 * 2 1 3 5 5 C 1.46502 * 119.99995 * 117.89909 * 4 2 1 6 6 C 1.50696 * 109.47074 * 90.00176 * 5 4 2 7 7 H 1.08002 * 119.99947 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00308 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00669 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99645 * 359.97438 * 8 6 5 11 11 H 1.48493 * 109.47617 * 269.99868 * 10 8 6 12 12 H 1.48502 * 109.47237 * 30.00476 * 10 8 6 13 13 H 1.48505 * 109.47097 * 150.00004 * 10 8 6 14 14 C 1.34778 * 119.99905 * 297.90122 * 4 2 1 15 15 O 1.21283 * 120.00113 * 4.96648 * 14 4 2 16 16 C 1.50700 * 120.00129 * 184.96487 * 14 4 2 17 17 H 1.09007 * 112.74486 * 324.87070 * 16 14 4 18 18 C 1.53515 * 113.47780 * 95.63994 * 16 14 4 19 19 C 1.53701 * 83.51123 * 88.77386 * 18 16 14 20 20 N 1.47480 * 113.47721 * 194.09918 * 16 14 4 21 21 H 1.08994 * 109.47019 * 306.42425 * 1 2 3 22 22 H 1.08990 * 109.47112 * 66.42830 * 1 2 3 23 23 H 1.09007 * 109.46609 * 186.42974 * 1 2 3 24 24 H 1.09000 * 109.47188 * 240.00421 * 2 1 3 25 25 H 1.08995 * 109.47378 * 174.30422 * 3 2 1 26 26 H 1.09004 * 109.46881 * 294.30660 * 3 2 1 27 27 H 1.09004 * 109.47259 * 54.30189 * 3 2 1 28 28 H 1.08993 * 109.46802 * 329.99987 * 5 4 2 29 29 H 1.09000 * 109.46925 * 209.99969 * 5 4 2 30 30 H 0.96998 * 120.00197 * 179.97438 * 9 8 6 31 31 H 1.08998 * 114.17027 * 202.39176 * 18 16 14 32 32 H 1.09002 * 114.16833 * 335.09555 * 18 16 14 33 33 H 1.08991 * 113.48027 * 271.26319 * 19 18 16 34 34 H 1.09000 * 113.53471 * 140.79131 * 19 18 16 35 35 H 1.00902 * 110.99702 * 160.54676 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8223 -1.9080 1.0622 6 6 4.2818 -1.5403 0.9862 7 1 4.5806 -0.5035 1.0325 8 6 5.2356 -2.5275 0.8575 9 7 6.5093 -2.2067 0.7906 10 14 4.7187 -4.3208 0.7780 11 1 4.6775 -4.8855 2.1508 12 1 3.3718 -4.4209 0.1608 13 1 5.6962 -5.0819 -0.0410 14 6 1.7281 -0.2059 2.4198 15 8 0.9888 0.7487 2.5343 16 6 2.3221 -0.8502 3.6459 17 1 2.4252 -1.9308 3.5462 18 6 3.5986 -0.1574 4.1431 19 6 2.6103 0.6994 4.9503 20 7 1.6698 -0.4356 4.9019 21 1 -0.3633 0.6102 0.8269 22 1 -0.3633 0.4109 -0.9418 23 1 -0.3633 -1.0213 0.1151 24 1 1.8933 -0.5138 -0.8900 25 1 3.1251 1.4443 0.1020 26 1 1.7622 1.9261 -0.9366 27 1 1.5957 1.9850 0.8346 28 1 2.5329 -2.4363 0.1539 29 1 2.6542 -2.5512 1.9260 30 1 7.1803 -2.9013 0.7004 31 1 4.2416 -0.7914 4.7536 32 1 4.1387 0.3906 3.3710 33 1 2.2576 1.5788 4.4117 34 1 2.9577 0.9327 5.9568 35 1 1.8595 -1.0943 5.6423 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384739540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:10 Heat of formation + Delta-G solvation = -14.374669 kcal Electronic energy + Delta-G solvation = -16770.564491 eV Core-core repulsion = 14190.257519 eV Total energy + Delta-G solvation = -2580.306972 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.80929 -39.42763 -36.87548 -34.93155 -33.39092 -29.51554 -28.30169 -28.01433 -27.50301 -24.43032 -23.50380 -21.90910 -19.13870 -19.00407 -18.03842 -17.50220 -16.58727 -16.26144 -15.69320 -15.54009 -14.75848 -14.64958 -14.53150 -14.19442 -13.97249 -13.69361 -13.61702 -13.30105 -12.86149 -12.60767 -12.58449 -12.32259 -12.18733 -11.95813 -11.86061 -11.63461 -11.46734 -10.76059 -10.47783 -9.55103 -9.37103 -8.26520 -6.32516 1.39438 1.42583 1.50852 1.71095 2.19091 2.35649 3.06969 3.22398 3.52288 3.60980 4.00688 4.17008 4.25437 4.38472 4.47043 4.54233 4.65752 4.72849 4.77560 4.78705 4.89941 4.92747 4.94818 4.96891 5.01923 5.12063 5.30362 5.39493 5.47974 5.86094 6.22683 6.38682 6.66854 6.75811 7.29910 7.43389 8.89317 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.021588 B = 0.011893 C = 0.009239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.726041 B = 2353.828739 C = 3029.995940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.138 3.862 3 C -0.154 4.154 4 N -0.593 5.593 5 C 0.213 3.787 6 C -0.527 4.527 7 H 0.033 0.967 8 C 0.022 3.978 9 N -0.941 5.941 10 Si 0.934 3.066 11 H -0.262 1.262 12 H -0.242 1.242 13 H -0.288 1.288 14 C 0.537 3.463 15 O -0.563 6.563 16 C 0.018 3.982 17 H 0.101 0.899 18 C -0.155 4.155 19 C 0.024 3.976 20 N -0.635 5.635 21 H 0.056 0.944 22 H 0.084 0.916 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.032 0.968 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.267 0.733 31 H 0.107 0.893 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.189 -0.122 3.157 8.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 C -0.212 4.212 4 N -0.324 5.324 5 C 0.091 3.909 6 C -0.566 4.566 7 H 0.052 0.948 8 C -0.177 4.177 9 N -0.581 5.581 10 Si 0.758 3.242 11 H -0.187 1.187 12 H -0.165 1.165 13 H -0.214 1.214 14 C 0.324 3.676 15 O -0.443 6.443 16 C -0.096 4.096 17 H 0.119 0.881 18 C -0.194 4.194 19 C -0.105 4.105 20 N -0.264 5.264 21 H 0.075 0.925 22 H 0.103 0.897 23 H 0.071 0.929 24 H 0.107 0.893 25 H 0.051 0.949 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.226 0.592 3.006 9.722 hybrid contribution 1.645 -1.108 -0.048 1.984 sum -7.581 -0.516 2.958 8.154 Atomic orbital electron populations 1.22092 0.93877 1.01965 1.03088 1.21115 0.94877 0.93233 0.87270 1.22043 0.99789 0.96431 1.02893 1.48056 1.51425 1.27653 1.05257 1.19722 0.89530 0.83484 0.98136 1.21424 0.90632 0.93866 1.50643 0.94820 1.25697 0.94458 1.03551 0.93998 1.70045 1.01599 1.35153 1.51294 0.85909 0.79508 0.79461 0.79355 1.18719 1.16530 1.21383 1.19918 0.80011 0.83262 0.84363 1.90521 1.37873 1.29063 1.86802 1.22738 0.94194 1.00910 0.91743 0.88070 1.24081 0.96456 0.99093 0.99816 1.23493 0.90363 0.95659 1.01031 1.65231 1.49882 1.08391 1.02892 0.92543 0.89734 0.92893 0.89330 0.94920 0.89779 0.92531 0.93797 0.94029 0.92436 0.87473 0.93172 0.90178 0.88341 0.83002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.05 71.98 0.65 -4.03 16 2 C 0.14 4.93 3.27 44.99 0.15 5.08 16 3 C -0.15 -5.46 8.99 71.98 0.65 -4.81 16 4 N -0.59 -24.02 2.41 -802.15 -1.93 -25.95 16 5 C 0.21 9.09 3.96 85.63 0.34 9.43 16 6 C -0.53 -27.18 9.94 25.60 0.25 -26.93 16 7 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 8 C 0.02 1.15 5.47 84.65 0.46 1.61 16 9 N -0.94 -54.55 13.96 21.44 0.30 -54.25 16 10 Si 0.93 39.11 27.47 68.60 1.88 41.00 16 11 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 12 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 13 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 14 C 0.54 22.00 6.42 87.66 0.56 22.57 16 15 O -0.56 -24.63 11.95 -3.04 -0.04 -24.67 16 16 C 0.02 0.65 3.99 41.44 0.17 0.81 16 17 H 0.10 3.54 6.23 -2.38 -0.01 3.53 16 18 C -0.16 -5.37 8.02 31.00 0.25 -5.12 16 19 C 0.02 0.75 8.16 83.64 0.68 1.43 16 20 N -0.63 -19.96 8.32 -522.43 -4.35 -24.31 16 21 H 0.06 1.97 6.36 -2.39 -0.02 1.95 16 22 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 24 H 0.09 3.06 7.81 -2.39 -0.02 3.04 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 27 H 0.06 2.16 6.37 -2.38 -0.02 2.15 16 28 H 0.04 1.80 7.00 -2.39 -0.02 1.78 16 29 H 0.04 1.68 5.45 -2.39 -0.01 1.66 16 30 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.05 2.06 8.10 -2.39 -0.02 2.04 16 33 H 0.08 2.83 7.22 -2.39 -0.02 2.81 16 34 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.35 8.75 8.85 -89.69 -0.79 7.96 16 Total: -1.00 -62.72 280.73 0.26 -62.46 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.23 Total: 25.69 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 4.16 Total: 0.03 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -5.98 Total: -104.51 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.04 Total: -24.67 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.88 Total: 41.00 kcal Total: -62.72 0.26 -62.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384739540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.086 kcal (2) G-P(sol) polarization free energy of solvation -62.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds