Wall clock time and date at job start Mon Mar 30 2020 02:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47204 * 2 1 4 4 H 1.09000 * 109.47364 * 304.20053 * 3 2 1 5 5 C 1.50706 * 109.47112 * 184.20219 * 3 2 1 6 6 N 1.34775 * 120.00037 * 86.31784 * 5 3 2 7 7 O 1.21281 * 120.00073 * 266.31526 * 5 3 2 8 8 N 1.46894 * 109.47315 * 64.20127 * 3 2 1 9 9 C 1.47903 * 110.99917 * 51.23969 * 8 3 2 10 10 C 1.53992 * 107.05618 * 145.84632 * 9 8 3 11 11 C 1.54593 * 105.14577 * 358.77383 * 10 9 8 12 12 H 1.08998 * 110.72134 * 96.57544 * 11 10 9 13 13 C 1.50698 * 110.72627 * 219.68930 * 11 10 9 14 14 H 1.07999 * 120.00378 * 116.15056 * 13 11 10 15 15 C 1.37877 * 119.99810 * 296.14519 * 13 11 10 16 16 N 1.31513 * 119.99938 * 1.94549 * 15 13 11 17 17 Si 1.86799 * 119.99883 * 181.94735 * 15 13 11 18 18 H 1.48501 * 109.46885 * 265.01796 * 17 15 13 19 19 H 1.48505 * 109.47102 * 145.02462 * 17 15 13 20 20 H 1.48497 * 109.47113 * 25.02245 * 17 15 13 21 21 C 1.48531 * 111.00100 * 168.63416 * 8 3 2 22 22 H 1.08994 * 109.47429 * 64.38955 * 1 2 3 23 23 H 1.09004 * 109.47633 * 184.38877 * 1 2 3 24 24 H 1.09000 * 109.46855 * 304.38699 * 1 2 3 25 25 H 1.09004 * 109.47148 * 240.00120 * 2 1 3 26 26 H 1.08995 * 109.47344 * 120.00361 * 2 1 3 27 27 H 0.97005 * 119.99973 * 359.97438 * 6 5 3 28 28 H 0.96996 * 120.00426 * 180.02562 * 6 5 3 29 29 H 1.09005 * 109.91848 * 26.49112 * 9 8 3 30 30 H 1.08999 * 110.08193 * 265.28957 * 9 8 3 31 31 H 1.09005 * 110.30859 * 239.85683 * 10 9 8 32 32 H 1.08996 * 110.31120 * 117.69306 * 10 9 8 33 33 H 0.97002 * 120.00278 * 180.02562 * 16 15 13 34 34 H 1.09004 * 110.66807 * 81.84912 * 21 8 3 35 35 H 1.09001 * 110.66960 * 318.71504 * 21 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6165 1.9776 -0.8499 5 6 3.5434 1.4437 -0.1041 6 7 4.1352 1.3978 -1.3141 7 8 4.2209 1.4861 0.9010 8 7 1.6349 2.1051 1.2469 9 6 2.0128 1.2944 2.4248 10 6 2.3789 2.2782 3.5516 11 6 2.2154 3.6839 2.9293 12 1 1.2388 4.1023 3.1730 13 6 3.3173 4.6027 3.3904 14 1 4.0215 5.0025 2.6759 15 6 3.4263 4.9330 4.7246 16 7 2.5923 4.4161 5.6003 17 14 4.7587 6.1147 5.2883 18 1 5.9422 5.3439 5.7469 19 1 4.2438 6.9437 6.4077 20 1 5.1491 6.9959 4.1585 21 6 2.3333 3.4058 1.4096 22 1 -0.3634 0.4442 -0.9266 23 1 -0.3634 -1.0247 0.0786 24 1 -0.3633 0.5804 0.8481 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.5933 1.3635 -2.1180 28 1 5.1028 1.3982 -1.3812 29 1 2.8723 0.6684 2.1846 30 1 1.1743 0.6706 2.7344 31 1 3.4099 2.1227 3.8694 32 1 1.6997 2.1567 4.3954 33 1 2.6688 4.6488 6.5389 34 1 1.8326 4.1857 0.8359 35 1 3.3791 3.3206 1.1141 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397574072.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:11 Heat of formation + Delta-G solvation = -37.659044 kcal Electronic energy + Delta-G solvation = -16622.358329 eV Core-core repulsion = 14041.041671 eV Total energy + Delta-G solvation = -2581.316658 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.18290 -37.02340 -34.49169 -33.33813 -32.19243 -29.62616 -28.05655 -26.22241 -24.02513 -22.11204 -20.92003 -19.50439 -18.99009 -17.17977 -16.79481 -16.09293 -15.08343 -14.58161 -14.45162 -14.36393 -13.91334 -13.35457 -12.81500 -12.32463 -12.07951 -11.76271 -11.39716 -11.20682 -10.95093 -10.90839 -10.63972 -10.47735 -10.31182 -10.09065 -9.85639 -9.61542 -9.28740 -9.07589 -8.58049 -8.25625 -7.57304 -5.89842 -3.91210 2.88446 3.37907 3.44066 3.47907 3.73259 4.49920 4.65405 4.99708 5.12479 5.23420 5.44027 5.50112 5.67322 5.82843 6.00400 6.03620 6.20982 6.33669 6.44173 6.52686 6.63858 6.74632 6.94912 7.00655 7.26909 7.40142 7.43429 7.69127 7.78286 7.82656 8.01736 8.17329 8.50772 8.60333 9.10135 9.71337 11.20278 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037943 B = 0.008096 C = 0.007181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.764991 B = 3457.623148 C = 3898.072450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.057 3.943 4 H 0.095 0.905 5 C 0.484 3.516 6 N -0.863 5.863 7 O -0.517 6.517 8 N -0.492 5.492 9 C 0.029 3.971 10 C -0.095 4.095 11 C 0.057 3.943 12 H 0.033 0.967 13 C -0.507 4.507 14 H 0.053 0.947 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.283 1.283 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.027 3.973 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.396 0.604 28 H 0.394 0.606 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.258 0.742 34 H 0.056 0.944 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.906 -8.214 -13.677 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.056 4.056 4 H 0.113 0.887 5 C 0.267 3.733 6 N -0.427 5.427 7 O -0.391 6.391 8 N -0.215 5.215 9 C -0.099 4.099 10 C -0.134 4.134 11 C 0.038 3.962 12 H 0.051 0.949 13 C -0.546 4.546 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.717 3.283 18 H -0.209 1.209 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.099 4.099 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.224 0.776 28 H 0.224 0.776 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.264 -8.110 -12.719 15.254 hybrid contribution 1.864 0.515 -0.146 1.940 sum -0.399 -7.595 -12.865 14.945 Atomic orbital electron populations 1.21666 0.94319 1.01153 1.02864 1.21539 0.97517 0.93678 1.02260 1.22103 0.88546 0.97418 0.97572 0.88730 1.22207 0.92770 0.75018 0.83279 1.44155 1.10988 1.78908 1.08681 1.90823 1.65934 1.47167 1.35157 1.65193 1.52298 1.04268 0.99749 1.23056 0.98174 0.97038 0.91607 1.22215 1.00449 0.95413 0.95298 1.19460 0.97095 0.92510 0.87094 0.94868 1.21086 1.12863 1.27818 0.92845 0.92896 1.24946 0.95967 0.96189 0.96837 1.69986 1.37026 1.43807 1.01984 0.86633 0.82181 0.81195 0.78300 1.20886 1.21269 1.19990 1.23620 0.96462 0.88485 1.01373 0.93076 0.93276 0.90776 0.92074 0.91014 0.77617 0.77626 0.92818 0.92805 0.92760 0.92731 0.93224 0.92535 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.85 37.16 0.37 -1.27 16 2 C -0.11 -1.40 5.08 -26.74 -0.14 -1.54 16 3 C 0.06 0.86 2.43 -68.87 -0.17 0.69 16 4 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 5 C 0.48 7.80 5.93 -10.98 -0.07 7.74 16 6 N -0.86 -9.46 8.87 31.22 0.28 -9.18 16 7 O -0.52 -11.05 13.20 5.56 0.07 -10.98 16 8 N -0.49 -9.52 4.74 -223.88 -1.06 -10.58 16 9 C 0.03 0.60 4.61 -2.75 -0.01 0.59 16 10 C -0.09 -2.43 5.60 -25.38 -0.14 -2.57 16 11 C 0.06 1.54 2.96 -89.91 -0.27 1.27 16 12 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 13 C -0.51 -14.82 8.40 -34.44 -0.29 -15.11 16 14 H 0.05 1.55 7.78 -52.49 -0.41 1.14 16 15 C 0.06 1.81 5.36 -17.82 -0.10 1.71 16 16 N -0.89 -26.69 12.54 55.43 0.70 -26.00 16 17 Si 0.89 22.36 29.54 -169.99 -5.02 17.33 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 21 C 0.03 0.62 5.56 -1.89 -0.01 0.61 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 1.02 7.61 -51.93 -0.40 0.62 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.02 6.40 -51.93 -0.33 0.68 16 27 H 0.40 2.91 8.83 -40.82 -0.36 2.55 16 28 H 0.39 4.01 8.93 -40.82 -0.36 3.65 16 29 H 0.05 1.15 5.03 -51.93 -0.26 0.89 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.52 7.84 -51.93 -0.41 1.11 16 32 H 0.05 1.44 8.09 -51.93 -0.42 1.02 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.30 5.18 -51.93 -0.27 1.03 16 LS Contribution 276.97 15.07 4.17 4.17 Total: -1.00 -33.11 276.97 -6.99 -40.10 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.31 Total: 3.02 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -0.82 Total: -7.89 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.09 Total: -45.76 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.07 Total: -10.98 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.11 -6.99 -40.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397574072.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.442 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds