Wall clock time and date at job start Mon Mar 30 2020 02:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47204 * 2 1 4 4 H 1.09000 * 109.47364 * 304.20053 * 3 2 1 5 5 C 1.50706 * 109.47112 * 184.20219 * 3 2 1 6 6 N 1.34775 * 120.00037 * 86.31784 * 5 3 2 7 7 O 1.21281 * 120.00073 * 266.31526 * 5 3 2 8 8 N 1.46894 * 109.47315 * 64.20127 * 3 2 1 9 9 C 1.47903 * 110.99917 * 51.23969 * 8 3 2 10 10 C 1.53992 * 107.05618 * 145.84632 * 9 8 3 11 11 C 1.54593 * 105.14577 * 358.77383 * 10 9 8 12 12 H 1.08998 * 110.72134 * 96.57544 * 11 10 9 13 13 C 1.50698 * 110.72627 * 219.68930 * 11 10 9 14 14 H 1.07999 * 120.00378 * 116.15056 * 13 11 10 15 15 C 1.37877 * 119.99810 * 296.14519 * 13 11 10 16 16 N 1.31513 * 119.99938 * 1.94549 * 15 13 11 17 17 Si 1.86799 * 119.99883 * 181.94735 * 15 13 11 18 18 H 1.48501 * 109.46885 * 265.01796 * 17 15 13 19 19 H 1.48505 * 109.47102 * 145.02462 * 17 15 13 20 20 H 1.48497 * 109.47113 * 25.02245 * 17 15 13 21 21 C 1.48531 * 111.00100 * 168.63416 * 8 3 2 22 22 H 1.08994 * 109.47429 * 64.38955 * 1 2 3 23 23 H 1.09004 * 109.47633 * 184.38877 * 1 2 3 24 24 H 1.09000 * 109.46855 * 304.38699 * 1 2 3 25 25 H 1.09004 * 109.47148 * 240.00120 * 2 1 3 26 26 H 1.08995 * 109.47344 * 120.00361 * 2 1 3 27 27 H 0.97005 * 119.99973 * 359.97438 * 6 5 3 28 28 H 0.96996 * 120.00426 * 180.02562 * 6 5 3 29 29 H 1.09005 * 109.91848 * 26.49112 * 9 8 3 30 30 H 1.08999 * 110.08193 * 265.28957 * 9 8 3 31 31 H 1.09005 * 110.30859 * 239.85683 * 10 9 8 32 32 H 1.08996 * 110.31120 * 117.69306 * 10 9 8 33 33 H 0.97002 * 120.00278 * 180.02562 * 16 15 13 34 34 H 1.09004 * 110.66807 * 81.84912 * 21 8 3 35 35 H 1.09001 * 110.66960 * 318.71504 * 21 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6165 1.9776 -0.8499 5 6 3.5434 1.4437 -0.1041 6 7 4.1352 1.3978 -1.3141 7 8 4.2209 1.4861 0.9010 8 7 1.6349 2.1051 1.2469 9 6 2.0128 1.2944 2.4248 10 6 2.3789 2.2782 3.5516 11 6 2.2154 3.6839 2.9293 12 1 1.2388 4.1023 3.1730 13 6 3.3173 4.6027 3.3904 14 1 4.0215 5.0025 2.6759 15 6 3.4263 4.9330 4.7246 16 7 2.5923 4.4161 5.6003 17 14 4.7587 6.1147 5.2883 18 1 5.9422 5.3439 5.7469 19 1 4.2438 6.9437 6.4077 20 1 5.1491 6.9959 4.1585 21 6 2.3333 3.4058 1.4096 22 1 -0.3634 0.4442 -0.9266 23 1 -0.3634 -1.0247 0.0786 24 1 -0.3633 0.5804 0.8481 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.5933 1.3635 -2.1180 28 1 5.1028 1.3982 -1.3812 29 1 2.8723 0.6684 2.1846 30 1 1.1743 0.6706 2.7344 31 1 3.4099 2.1227 3.8694 32 1 1.6997 2.1567 4.3954 33 1 2.6688 4.6488 6.5389 34 1 1.8326 4.1857 0.8359 35 1 3.3791 3.3206 1.1141 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397574072.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:11 Heat of formation + Delta-G solvation = -64.254732 kcal Electronic energy + Delta-G solvation = -16623.511605 eV Core-core repulsion = 14041.041671 eV Total energy + Delta-G solvation = -2582.469933 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.57366 -38.62378 -35.96632 -34.73519 -33.91814 -31.24386 -29.96730 -27.63985 -26.05636 -23.24630 -22.47947 -21.35283 -20.50075 -18.59004 -18.18554 -17.86147 -16.72867 -16.27337 -16.13098 -15.83868 -15.28901 -14.80473 -14.36066 -13.94064 -13.63763 -13.23311 -13.01781 -12.88667 -12.75378 -12.64313 -12.31998 -12.05880 -11.84134 -11.73139 -11.46330 -11.21353 -11.06496 -10.84085 -10.54305 -10.43974 -9.14658 -8.14011 -6.23370 1.36844 1.38127 1.49114 1.65012 2.41047 2.65222 3.14573 3.18059 3.89698 4.05017 4.10238 4.23649 4.43247 4.52895 4.60668 4.73174 4.74873 4.88738 4.97661 5.06766 5.16744 5.27128 5.31199 5.39806 5.60186 5.61130 5.77124 5.87233 5.95501 6.00701 6.17988 6.40708 6.53510 6.85107 7.41743 7.43014 8.95801 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037943 B = 0.008096 C = 0.007181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.764991 B = 3457.623148 C = 3898.072450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C 0.053 3.947 4 H 0.128 0.872 5 C 0.481 3.519 6 N -0.835 5.835 7 O -0.578 6.578 8 N -0.487 5.487 9 C 0.045 3.955 10 C -0.086 4.086 11 C 0.048 3.952 12 H 0.004 0.996 13 C -0.530 4.530 14 H 0.046 0.954 15 C 0.011 3.989 16 N -0.918 5.918 17 Si 0.956 3.044 18 H -0.280 1.280 19 H -0.277 1.277 20 H -0.267 1.267 21 C 0.042 3.958 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.418 0.582 28 H 0.402 0.598 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.017 0.983 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.069 0.931 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 -8.684 -16.040 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C -0.060 4.060 4 H 0.146 0.854 5 C 0.265 3.735 6 N -0.400 5.400 7 O -0.458 6.458 8 N -0.210 5.210 9 C -0.082 4.082 10 C -0.125 4.125 11 C 0.028 3.972 12 H 0.023 0.977 13 C -0.569 4.569 14 H 0.064 0.936 15 C -0.188 4.188 16 N -0.557 5.557 17 Si 0.781 3.219 18 H -0.206 1.206 19 H -0.202 1.202 20 H -0.191 1.191 21 C -0.085 4.085 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.114 0.886 26 H 0.070 0.930 27 H 0.250 0.750 28 H 0.233 0.767 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.341 -8.590 -15.165 17.586 hybrid contribution 1.874 0.623 0.504 2.038 sum -0.467 -7.967 -14.661 16.693 Atomic orbital electron populations 1.21638 0.93345 1.01962 1.02712 1.21565 0.98228 0.91707 1.03020 1.22362 0.88330 0.99211 0.96065 0.85445 1.22312 0.93077 0.74423 0.83716 1.43851 1.11730 1.76360 1.08030 1.90814 1.67050 1.50401 1.37493 1.65132 1.51830 1.03063 1.01013 1.22827 0.98724 0.95932 0.90742 1.21982 0.97591 0.96589 0.96326 1.19418 0.94824 0.92459 0.90453 0.97736 1.21403 1.13532 1.28659 0.93288 0.93572 1.25776 0.98276 0.97860 0.96896 1.70107 1.38527 1.44839 1.02263 0.85585 0.79165 0.79046 0.78125 1.20621 1.20194 1.19092 1.23314 0.96268 0.90646 0.98281 0.91131 0.91658 0.93405 0.88598 0.93003 0.75028 0.76745 0.93052 0.90964 0.96373 0.94814 0.93034 0.91272 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.85 71.98 0.71 -2.03 16 2 C -0.11 -2.33 5.08 30.59 0.16 -2.18 16 3 C 0.05 1.45 2.43 44.17 0.11 1.56 16 4 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 5 C 0.48 14.57 5.93 87.66 0.52 15.09 16 6 N -0.83 -15.67 8.87 -173.53 -1.54 -17.21 16 7 O -0.58 -24.74 13.20 -3.03 -0.04 -24.78 16 8 N -0.49 -18.45 4.74 -862.23 -4.08 -22.53 16 9 C 0.05 1.92 4.61 86.45 0.40 2.32 16 10 C -0.09 -4.60 5.60 31.47 0.18 -4.43 16 11 C 0.05 2.64 2.96 -10.33 -0.03 2.60 16 12 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 13 C -0.53 -31.96 8.40 25.60 0.21 -31.75 16 14 H 0.05 2.77 7.78 -2.91 -0.02 2.74 16 15 C 0.01 0.63 5.36 84.65 0.45 1.09 16 16 N -0.92 -56.79 12.54 21.45 0.27 -56.52 16 17 Si 0.96 46.61 29.54 68.60 2.03 48.64 16 18 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 C 0.04 1.92 5.56 86.65 0.48 2.40 16 22 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 1.20 7.61 -2.39 -0.02 1.18 16 25 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.05 1.36 6.40 -2.39 -0.02 1.34 16 27 H 0.42 4.29 8.83 -92.70 -0.82 3.47 16 28 H 0.40 7.09 8.93 -92.71 -0.83 6.26 16 29 H 0.05 2.23 5.03 -2.38 -0.01 2.22 16 30 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.02 1.05 7.84 -2.38 -0.02 1.03 16 32 H 0.03 1.87 8.09 -2.39 -0.02 1.85 16 33 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.04 1.99 5.18 -2.39 -0.01 1.97 16 Total: -1.00 -75.13 276.97 -0.73 -75.86 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -0.55 Total: 11.85 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 3.19 Total: -15.31 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -5.35 Total: -96.26 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.04 Total: -24.78 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -75.13 -0.73 -75.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397574072.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.606 kcal (2) G-P(sol) polarization free energy of solvation -75.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds