Wall clock time and date at job start Mon Mar 30 2020 03:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47530 * 2 1 4 4 N 1.46495 * 109.47208 * 180.02562 * 3 2 1 5 5 C 1.34781 * 120.00015 * 180.02562 * 4 3 2 6 6 O 1.21585 * 119.99794 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99950 * 180.02562 * 5 4 3 8 8 C 1.47018 * 125.64993 * 359.97262 * 7 5 4 9 9 C 1.54325 * 107.40412 * 178.90064 * 8 7 5 10 10 C 1.55405 * 102.82616 * 337.97548 * 9 8 7 11 11 H 1.09000 * 110.89538 * 277.26533 * 10 9 8 12 12 C 1.50704 * 111.07313 * 153.48318 * 10 9 8 13 13 H 1.08006 * 119.99604 * 6.21211 * 12 10 9 14 14 C 1.37874 * 120.00539 * 186.20801 * 12 10 9 15 15 N 1.31519 * 119.99600 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00227 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.46959 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46720 * 120.00327 * 16 14 12 19 19 H 1.48493 * 109.47208 * 240.00122 * 16 14 12 20 20 C 1.47426 * 125.64489 * 180.02562 * 7 5 4 21 21 H 1.08997 * 109.47393 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46817 * 300.00183 * 1 2 3 23 23 H 1.08999 * 109.47532 * 59.99443 * 1 2 3 24 24 H 1.08999 * 109.47097 * 240.00047 * 2 1 3 25 25 H 1.08999 * 109.47532 * 120.00557 * 2 1 3 26 26 H 1.08999 * 109.46892 * 59.99922 * 3 2 1 27 27 H 1.08996 * 109.46776 * 300.00129 * 3 2 1 28 28 H 0.97001 * 120.00572 * 0.02562 * 4 3 2 29 29 H 1.09002 * 109.88241 * 298.39592 * 8 7 5 30 30 H 1.09000 * 109.88049 * 59.40721 * 8 7 5 31 31 H 1.09000 * 110.72188 * 96.24097 * 9 8 7 32 32 H 1.09002 * 110.72265 * 219.52294 * 9 8 7 33 33 H 0.96998 * 120.00006 * 179.97438 * 15 14 12 34 34 H 1.08999 * 110.36956 * 322.93474 * 20 7 5 35 35 H 1.09003 * 110.36599 * 85.25378 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1790 2.6096 -0.0002 6 8 3.5711 3.6625 0.0002 7 7 5.5267 2.6095 -0.0013 8 6 6.3835 1.4148 -0.0024 9 6 7.8490 1.8977 -0.0317 10 6 7.7275 3.3336 -0.6136 11 1 7.6726 3.3086 -1.7019 12 6 8.8688 4.2033 -0.1530 13 1 9.6811 3.7728 0.4139 14 6 8.8762 5.5484 -0.4553 15 7 7.8868 6.0727 -1.1453 16 14 10.2912 6.6262 0.1150 17 1 11.2702 5.8008 0.8669 18 1 10.9584 7.2325 -1.0651 19 1 9.7702 7.7021 0.9960 20 6 6.3860 3.8075 -0.0005 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 3.9901 0.6023 -0.0013 29 1 6.2042 0.8291 0.8993 30 1 6.1749 0.8098 -0.8848 31 1 8.2665 1.9241 0.9748 32 1 8.4508 1.2645 -0.6836 33 1 7.8917 7.0192 -1.3577 34 1 5.9440 4.5918 -0.6150 35 1 6.5392 4.1637 1.0182 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397659195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:49 Heat of formation + Delta-G solvation = -45.025257 kcal Electronic energy + Delta-G solvation = -15747.447540 eV Core-core repulsion = 13165.811459 eV Total energy + Delta-G solvation = -2581.636081 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.53131 -36.98042 -35.40845 -33.06509 -32.25156 -30.32612 -28.01132 -26.25788 -24.46022 -22.39437 -21.63355 -19.73754 -19.23220 -17.37050 -16.49113 -15.78619 -15.66438 -14.86214 -14.52343 -14.16813 -13.80940 -12.99440 -12.77435 -12.50298 -12.37685 -12.12853 -11.81201 -11.78777 -11.36435 -11.18705 -10.96723 -10.94856 -10.54910 -10.51276 -9.84903 -9.55074 -9.29015 -8.99204 -8.76378 -8.50504 -7.68286 -6.06862 -4.12597 3.21314 3.30385 3.37703 3.40556 3.81325 4.39517 4.54480 4.77725 4.85992 5.12826 5.26365 5.51023 5.52727 5.54231 5.64823 5.67388 5.85934 5.89241 6.04911 6.05552 6.21082 6.49656 6.75030 6.83644 6.87028 7.02916 7.13340 7.43551 7.70881 7.77806 7.93330 8.31739 8.62567 8.90614 9.20786 9.53288 11.02381 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.059446 B = 0.005459 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.902756 B = 5128.097157 C = 5477.483700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.139 3.861 4 N -0.755 5.755 5 C 0.713 3.287 6 O -0.597 6.597 7 N -0.634 5.634 8 C 0.103 3.897 9 C -0.127 4.127 10 C 0.046 3.954 11 H 0.038 0.962 12 C -0.518 4.518 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.138 3.862 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.392 0.608 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.263 0.737 34 H 0.082 0.918 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.337 -12.767 2.019 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.014 3.986 4 N -0.412 5.412 5 C 0.415 3.585 6 O -0.475 6.475 7 N -0.372 5.372 8 C -0.021 4.021 9 C -0.165 4.165 10 C 0.026 3.974 11 H 0.056 0.944 12 C -0.557 4.557 13 H 0.080 0.920 14 C -0.139 4.139 15 N -0.521 5.521 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C 0.016 3.984 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.225 0.775 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.937 -11.783 1.945 14.916 hybrid contribution 0.917 0.192 0.286 0.979 sum -8.020 -11.591 2.231 14.271 Atomic orbital electron populations 1.21669 0.94747 1.01839 1.02355 1.21732 0.96719 0.96336 1.02525 1.21142 0.79124 0.96254 1.02085 1.45171 1.06697 1.07365 1.81938 1.15577 0.80889 0.83780 0.78256 1.90884 1.67290 1.30494 1.58879 1.48125 1.02815 1.10159 1.76057 1.21934 0.92975 0.88073 0.99107 1.22746 0.92262 0.99921 1.01611 1.19905 0.92218 0.89254 0.96001 0.94436 1.21008 1.05824 0.93113 1.35744 0.91999 1.25053 0.96005 0.98210 0.94670 1.69962 1.31026 1.12996 1.38156 0.86487 0.82257 0.80494 0.78494 1.19706 1.20974 1.20929 1.22576 0.89943 0.85382 1.00449 0.92409 0.92386 0.92345 0.91450 0.91492 0.92029 0.91982 0.77484 0.93324 0.93126 0.91490 0.91790 0.92699 0.89933 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.14 -1.23 6.05 -26.73 -0.16 -1.39 16 3 C 0.14 1.82 5.67 -4.04 -0.02 1.80 16 4 N -0.75 -11.71 5.52 -65.23 -0.36 -12.06 16 5 C 0.71 15.05 8.49 -86.92 -0.74 14.31 16 6 O -0.60 -15.11 16.60 5.29 0.09 -15.02 16 7 N -0.63 -13.45 3.33 -176.23 -0.59 -14.04 16 8 C 0.10 1.75 6.14 -3.07 -0.02 1.73 16 9 C -0.13 -2.44 6.42 -24.76 -0.16 -2.60 16 10 C 0.05 1.11 2.96 -89.48 -0.27 0.85 16 11 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 12 C -0.52 -13.84 8.56 -34.44 -0.29 -14.13 16 13 H 0.06 1.61 7.79 -52.48 -0.41 1.20 16 14 C 0.06 1.75 5.34 -17.82 -0.10 1.65 16 15 N -0.88 -25.54 12.06 55.43 0.67 -24.87 16 16 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.14 3.45 5.66 -2.52 -0.01 3.43 16 21 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.39 4.98 7.46 -40.82 -0.30 4.68 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.08 2.36 7.33 -51.93 -0.38 1.98 16 35 H 0.05 1.29 8.03 -51.93 -0.42 0.88 16 LS Contribution 290.06 15.07 4.37 4.37 Total: -1.00 -31.58 290.06 -7.95 -39.53 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.71 Total: 1.22 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -1.40 Total: 4.87 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.28 Total: -50.98 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.09 Total: -15.02 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.58 -7.95 -39.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397659195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.493 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds