Wall clock time and date at job start Mon Mar 30 2020 02:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46782 * 2 1 4 4 H 1.09001 * 109.47678 * 55.00062 * 3 2 1 5 5 C 1.50708 * 109.47030 * 174.99930 * 3 2 1 6 6 H 1.07994 * 120.00174 * 119.99917 * 5 3 2 7 7 C 1.37878 * 119.99724 * 300.00161 * 5 3 2 8 8 N 1.31517 * 119.99542 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00109 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47404 * 90.00166 * 9 7 5 11 11 H 1.48501 * 109.46915 * 210.00226 * 9 7 5 12 12 H 1.48501 * 109.47332 * 329.99899 * 9 7 5 13 13 N 1.46500 * 109.47413 * 294.99899 * 3 2 1 14 14 C 1.34768 * 120.00097 * 85.27842 * 13 3 2 15 15 O 1.21280 * 120.00026 * 359.72404 * 14 13 3 16 16 C 1.50699 * 120.00255 * 179.73003 * 14 13 3 17 17 C 1.52998 * 109.47427 * 181.87506 * 16 14 13 18 18 N 1.46906 * 115.54905 * 280.04683 * 17 16 14 19 19 C 1.52999 * 117.50473 * 134.34057 * 17 16 14 20 20 C 1.52997 * 117.50245 * 65.71428 * 17 16 14 21 21 H 1.09005 * 109.47383 * 299.99928 * 1 2 3 22 22 H 1.09002 * 109.46995 * 60.00377 * 1 2 3 23 23 H 1.08999 * 109.47232 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47048 * 239.99919 * 2 1 3 25 25 H 1.09002 * 109.46995 * 119.99623 * 2 1 3 26 26 H 0.97003 * 119.99606 * 179.97438 * 8 7 5 27 27 H 0.97004 * 119.99910 * 265.00741 * 13 3 2 28 28 H 1.09001 * 109.46939 * 301.86731 * 16 14 13 29 29 H 1.08994 * 109.47587 * 61.86755 * 16 14 13 30 30 H 1.00895 * 110.99986 * 295.81997 * 18 17 16 31 31 H 1.00906 * 111.00035 * 59.77119 * 18 17 16 32 32 H 1.09000 * 117.49459 * 359.97438 * 19 17 16 33 33 H 1.09000 * 117.50289 * 145.02123 * 19 17 16 34 34 H 1.09001 * 117.50402 * 214.98204 * 20 17 16 35 35 H 1.09005 * 117.49737 * 0.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 5.4540 0.8796 1.3358 9 14 3.0963 0.1101 2.5707 10 1 2.8744 -1.3260 2.2646 11 1 3.7941 0.2361 3.8755 12 1 1.7881 0.8094 2.6395 13 7 1.6524 2.0975 -1.2518 14 6 0.4373 2.6693 -1.3651 15 8 -0.3373 2.6372 -0.4324 16 6 0.0409 3.3484 -2.6506 17 6 -1.3577 3.9501 -2.4995 18 7 -2.4731 3.0054 -2.6466 19 6 -1.5704 5.3789 -3.0035 20 6 -1.5296 5.0960 -1.5004 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 5.8770 0.4818 2.1128 27 1 2.2719 2.1231 -1.9978 28 1 0.7544 4.1404 -2.8781 29 1 0.0371 2.6191 -3.4607 30 1 -2.5036 2.6245 -3.5804 31 1 -2.4175 2.2701 -1.9578 32 1 -0.7138 5.8905 -3.4424 33 1 -2.5380 5.6183 -3.4445 34 1 -2.4704 5.1492 -0.9526 35 1 -0.6462 5.4215 -0.9511 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398161559.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:19 Heat of formation + Delta-G solvation = -18.340501 kcal Electronic energy + Delta-G solvation = -16251.320925 eV Core-core repulsion = 13670.841982 eV Total energy + Delta-G solvation = -2580.478943 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.58388 -37.49556 -35.17819 -32.42022 -31.67005 -31.02193 -29.01474 -27.19216 -22.75223 -22.32992 -21.23851 -19.69119 -19.25994 -17.25712 -16.01759 -15.89858 -15.72913 -15.11054 -14.55701 -14.39725 -13.97613 -13.33967 -12.90138 -12.71021 -12.44178 -12.11611 -11.83589 -11.59101 -11.32376 -11.09825 -10.90318 -10.66517 -10.45985 -9.95097 -9.84174 -9.56509 -9.24850 -9.05692 -8.77463 -8.74477 -8.06033 -6.23257 -4.25729 3.20951 3.25674 3.33724 3.38663 3.66114 4.22518 4.29673 4.41390 4.76566 5.06459 5.07252 5.10880 5.52400 5.61035 5.70363 5.81285 5.82086 5.93409 5.99617 6.12608 6.15504 6.31669 6.62170 6.67385 6.82538 6.92240 7.23072 7.26312 7.30230 7.47698 7.51563 8.14654 8.52815 8.74361 8.96294 9.37945 10.88878 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.043238 B = 0.007279 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.416353 B = 3845.694190 C = 4091.382223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.703 5.703 14 C 0.500 3.500 15 O -0.542 6.542 16 C -0.137 4.137 17 C 0.057 3.943 18 N -0.810 5.810 19 C -0.170 4.170 20 C -0.139 4.139 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.030 0.970 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.267 0.733 27 H 0.393 0.607 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.336 0.664 31 H 0.353 0.647 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.853 3.662 -8.585 14.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.529 5.529 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.352 5.352 14 C 0.285 3.715 15 O -0.420 6.420 16 C -0.180 4.180 17 C -0.037 4.037 18 N -0.340 5.340 19 C -0.207 4.207 20 C -0.177 4.177 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.226 0.774 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.149 0.851 31 H 0.168 0.832 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.713 4.191 -7.613 14.585 hybrid contribution 0.818 -1.312 0.141 1.552 sum -10.895 2.880 -7.472 13.521 Atomic orbital electron populations 1.21857 0.96959 0.98928 1.02156 1.22280 0.94342 1.00061 1.01014 1.19119 0.95518 0.88429 0.83015 0.93373 1.21069 0.88714 1.39773 1.07815 0.90292 1.24845 0.94874 0.95151 0.97694 1.69873 1.08696 1.44533 1.29828 0.86890 0.80958 0.79904 0.80894 1.20284 1.22149 1.18476 1.46208 1.15163 1.55925 1.17875 1.20382 0.82561 0.79249 0.89275 1.90671 1.51307 1.59657 1.40374 1.21872 0.97530 1.01375 0.97222 1.20796 0.88174 0.88283 1.06454 1.58537 1.43589 1.23047 1.08789 1.23181 1.02851 0.96574 0.98126 1.22869 1.03306 1.00046 0.91472 0.92816 0.93121 0.95056 0.92442 0.92830 0.92284 0.77393 0.88835 0.89413 0.85118 0.83210 0.88990 0.88527 0.88510 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.52 37.16 0.32 -2.47 16 2 C -0.14 -3.04 5.11 -26.73 -0.14 -3.17 16 3 C 0.24 5.66 1.83 -69.08 -0.13 5.54 16 4 H 0.05 1.25 6.63 -51.93 -0.34 0.91 16 5 C -0.54 -14.38 9.31 -34.44 -0.32 -14.70 16 6 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 9 Si 0.88 21.76 24.41 -169.99 -4.15 17.61 16 10 H -0.28 -6.59 6.83 56.52 0.39 -6.20 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 12 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 13 N -0.70 -13.42 5.02 -54.93 -0.28 -13.70 16 14 C 0.50 8.78 6.30 -10.99 -0.07 8.71 16 15 O -0.54 -11.05 12.18 5.56 0.07 -10.98 16 16 C -0.14 -1.78 5.86 -27.88 -0.16 -1.95 16 17 C 0.06 0.74 2.02 -131.60 -0.27 0.48 16 18 N -0.81 -10.09 9.70 0.74 0.01 -10.08 16 19 C -0.17 -1.89 10.11 -26.73 -0.27 -2.16 16 20 C -0.14 -1.90 9.33 -26.73 -0.25 -2.15 16 21 H 0.05 1.12 7.85 -51.93 -0.41 0.72 16 22 H 0.05 0.95 5.66 -51.93 -0.29 0.66 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.39 6.68 8.54 -40.82 -0.35 6.33 16 28 H 0.09 1.09 7.95 -51.93 -0.41 0.68 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.34 3.44 9.08 -39.29 -0.36 3.08 16 31 H 0.35 4.88 8.64 -39.29 -0.34 4.54 16 32 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 280.35 15.07 4.22 4.22 Total: -1.00 -30.13 280.35 -5.96 -36.09 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.23 Total: 12.25 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.38 Total: -9.80 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.51 Total: -49.40 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.07 Total: -10.98 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.15 Total: 17.61 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.13 -5.96 -36.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398161559.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.752 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds