Wall clock time and date at job start Mon Mar 30 2020 02:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46782 * 2 1 4 4 H 1.09001 * 109.47678 * 55.00062 * 3 2 1 5 5 C 1.50708 * 109.47030 * 174.99930 * 3 2 1 6 6 H 1.07994 * 120.00174 * 119.99917 * 5 3 2 7 7 C 1.37878 * 119.99724 * 300.00161 * 5 3 2 8 8 N 1.31517 * 119.99542 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00109 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47404 * 90.00166 * 9 7 5 11 11 H 1.48501 * 109.46915 * 210.00226 * 9 7 5 12 12 H 1.48501 * 109.47332 * 329.99899 * 9 7 5 13 13 N 1.46500 * 109.47413 * 294.99899 * 3 2 1 14 14 C 1.34768 * 120.00097 * 85.27842 * 13 3 2 15 15 O 1.21280 * 120.00026 * 359.72404 * 14 13 3 16 16 C 1.50699 * 120.00255 * 179.73003 * 14 13 3 17 17 C 1.52998 * 109.47427 * 181.87506 * 16 14 13 18 18 N 1.46906 * 115.54905 * 280.04683 * 17 16 14 19 19 C 1.52999 * 117.50473 * 134.34057 * 17 16 14 20 20 C 1.52997 * 117.50245 * 65.71428 * 17 16 14 21 21 H 1.09005 * 109.47383 * 299.99928 * 1 2 3 22 22 H 1.09002 * 109.46995 * 60.00377 * 1 2 3 23 23 H 1.08999 * 109.47232 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47048 * 239.99919 * 2 1 3 25 25 H 1.09002 * 109.46995 * 119.99623 * 2 1 3 26 26 H 0.97003 * 119.99606 * 179.97438 * 8 7 5 27 27 H 0.97004 * 119.99910 * 265.00741 * 13 3 2 28 28 H 1.09001 * 109.46939 * 301.86731 * 16 14 13 29 29 H 1.08994 * 109.47587 * 61.86755 * 16 14 13 30 30 H 1.00895 * 110.99986 * 295.81997 * 18 17 16 31 31 H 1.00906 * 111.00035 * 59.77119 * 18 17 16 32 32 H 1.09000 * 117.49459 * 359.97438 * 19 17 16 33 33 H 1.09000 * 117.50289 * 145.02123 * 19 17 16 34 34 H 1.09001 * 117.50402 * 214.98204 * 20 17 16 35 35 H 1.09005 * 117.49737 * 0.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 5.4540 0.8796 1.3358 9 14 3.0963 0.1101 2.5707 10 1 2.8744 -1.3260 2.2646 11 1 3.7941 0.2361 3.8755 12 1 1.7881 0.8094 2.6395 13 7 1.6524 2.0975 -1.2518 14 6 0.4373 2.6693 -1.3651 15 8 -0.3373 2.6372 -0.4324 16 6 0.0409 3.3484 -2.6506 17 6 -1.3577 3.9501 -2.4995 18 7 -2.4731 3.0054 -2.6466 19 6 -1.5704 5.3789 -3.0035 20 6 -1.5296 5.0960 -1.5004 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 5.8770 0.4818 2.1128 27 1 2.2719 2.1231 -1.9978 28 1 0.7544 4.1404 -2.8781 29 1 0.0371 2.6191 -3.4607 30 1 -2.5036 2.6245 -3.5804 31 1 -2.4175 2.2701 -1.9578 32 1 -0.7138 5.8905 -3.4424 33 1 -2.5380 5.6183 -3.4445 34 1 -2.4704 5.1492 -0.9526 35 1 -0.6462 5.4215 -0.9511 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398161559.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:19 Heat of formation + Delta-G solvation = -41.863041 kcal Electronic energy + Delta-G solvation = -16252.340938 eV Core-core repulsion = 13670.841982 eV Total energy + Delta-G solvation = -2581.498957 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.96772 -38.67787 -36.85956 -34.38828 -33.33195 -31.98897 -30.34491 -28.93813 -24.63182 -23.32306 -22.76385 -21.28136 -20.42948 -19.04481 -17.62584 -17.42911 -17.02936 -16.23142 -16.07966 -15.82003 -15.35738 -14.96316 -14.54604 -14.19485 -13.83391 -13.71691 -13.36804 -13.07742 -12.80310 -12.77157 -12.40339 -12.28159 -11.86614 -11.45345 -11.38820 -11.24431 -10.91564 -10.86969 -10.40624 -9.74821 -9.70068 -8.40037 -6.45131 1.24592 1.33118 1.42675 1.87174 2.23948 2.41876 2.96000 3.04806 3.47339 3.73716 3.98584 4.06733 4.23338 4.30982 4.36857 4.50367 4.63171 4.80081 4.81975 4.86728 4.87818 5.01045 5.10965 5.13339 5.23269 5.34642 5.41720 5.51934 5.70435 6.14559 6.26591 6.57601 6.59300 6.95550 7.19119 7.55315 8.75276 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.043238 B = 0.007279 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.416353 B = 3845.694190 C = 4091.382223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.137 4.137 3 C 0.251 3.749 4 H 0.019 0.981 5 C -0.534 4.534 6 H 0.055 0.945 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.937 3.063 10 H -0.260 1.260 11 H -0.294 1.294 12 H -0.262 1.262 13 N -0.706 5.706 14 C 0.499 3.501 15 O -0.570 6.570 16 C -0.126 4.126 17 C 0.047 3.953 18 N -0.812 5.812 19 C -0.140 4.140 20 C -0.164 4.164 21 H 0.035 0.965 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.040 0.960 26 H 0.270 0.730 27 H 0.404 0.596 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.350 0.650 31 H 0.344 0.656 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.318 3.480 -10.099 16.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.176 4.176 3 C 0.146 3.854 4 H 0.037 0.963 5 C -0.572 4.572 6 H 0.073 0.927 7 C -0.171 4.171 8 N -0.574 5.574 9 Si 0.765 3.235 10 H -0.186 1.186 11 H -0.221 1.221 12 H -0.186 1.186 13 N -0.355 5.355 14 C 0.286 3.714 15 O -0.450 6.450 16 C -0.168 4.168 17 C -0.047 4.047 18 N -0.342 5.342 19 C -0.177 4.177 20 C -0.201 4.201 21 H 0.054 0.946 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.239 0.761 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.194 4.017 -9.173 16.564 hybrid contribution 1.270 -1.176 0.563 1.820 sum -11.923 2.842 -8.610 14.979 Atomic orbital electron populations 1.21736 0.94999 1.00427 1.01648 1.22196 0.96020 0.98545 1.00804 1.18716 0.92904 0.89612 0.84202 0.96272 1.21340 0.90614 1.38379 1.06836 0.92664 1.25558 0.95716 0.95947 0.99883 1.69981 1.10265 1.46251 1.30855 0.86022 0.79252 0.79892 0.78359 1.18624 1.22134 1.18619 1.46072 1.16309 1.56354 1.16772 1.21173 0.81338 0.78307 0.90565 1.90666 1.51972 1.60446 1.41949 1.21869 0.97898 1.02093 0.94954 1.20910 0.88223 0.88997 1.06574 1.58514 1.43400 1.22816 1.09450 1.23241 1.04166 0.94607 0.95685 1.22818 1.02213 1.02067 0.93039 0.94602 0.92365 0.92489 0.91463 0.94147 0.92115 0.76138 0.86946 0.86673 0.83566 0.84194 0.86973 0.87561 0.89642 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 8.52 71.98 0.61 -4.26 16 2 C -0.14 -5.81 5.11 30.59 0.16 -5.66 16 3 C 0.25 11.61 1.83 44.25 0.08 11.70 16 4 H 0.02 1.02 6.63 -2.39 -0.02 1.00 16 5 C -0.53 -28.94 9.31 25.60 0.24 -28.70 16 6 H 0.06 3.19 7.98 -2.91 -0.02 3.16 16 7 C 0.03 1.62 5.45 84.65 0.46 2.08 16 8 N -0.93 -56.17 13.96 21.45 0.30 -55.87 16 9 Si 0.94 45.06 24.41 68.60 1.67 46.73 16 10 H -0.26 -11.78 6.83 99.48 0.68 -11.10 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 12 H -0.26 -12.52 6.53 99.48 0.65 -11.87 16 13 N -0.71 -26.13 5.02 -446.10 -2.24 -28.36 16 14 C 0.50 16.70 6.30 87.66 0.55 17.25 16 15 O -0.57 -22.83 12.18 -3.03 -0.04 -22.87 16 16 C -0.13 -2.89 5.86 29.85 0.17 -2.72 16 17 C 0.05 1.10 2.02 3.52 0.01 1.11 16 18 N -0.81 -18.31 9.70 -151.56 -1.47 -19.78 16 19 C -0.14 -2.68 10.11 30.59 0.31 -2.37 16 20 C -0.16 -4.26 9.33 30.59 0.29 -3.98 16 21 H 0.03 1.45 7.85 -2.38 -0.02 1.43 16 22 H 0.06 2.06 5.66 -2.39 -0.01 2.05 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 25 H 0.04 1.82 3.22 -2.39 -0.01 1.81 16 26 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.40 13.17 8.54 -92.71 -0.79 12.37 16 28 H 0.11 2.21 7.95 -2.39 -0.02 2.19 16 29 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.35 6.10 9.08 -89.70 -0.81 5.28 16 31 H 0.34 8.91 8.64 -89.69 -0.78 8.13 16 32 H 0.11 1.73 8.08 -2.39 -0.02 1.71 16 33 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -65.18 280.35 -0.24 -65.43 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: -1.35 Total: 30.26 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 2.88 Total: -15.54 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -3.41 Total: -104.01 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.04 Total: -22.87 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.67 Total: 46.73 kcal Total: -65.18 -0.24 -65.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398161559.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.563 kcal (2) G-P(sol) polarization free energy of solvation -65.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds