Wall clock time and date at job start Mon Mar 30 2020 02:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46854 * 90.00146 * 9 7 5 11 11 H 1.48502 * 109.47180 * 209.99800 * 9 7 5 12 12 H 1.48497 * 109.47188 * 330.00489 * 9 7 5 13 13 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 14 14 C 1.34777 * 120.00660 * 275.00187 * 13 3 2 15 15 O 1.21281 * 119.99633 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00373 * 179.97438 * 14 13 3 17 17 C 1.53001 * 112.93516 * 50.33919 * 16 14 13 18 18 C 1.53932 * 113.73584 * 278.76616 * 16 14 13 19 19 N 1.48187 * 86.10327 * 221.95623 * 18 16 14 20 20 C 1.47963 * 90.79564 * 24.60066 * 19 18 16 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 26 26 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 27 27 H 0.97010 * 119.99804 * 95.00047 * 13 3 2 28 28 H 1.08997 * 109.47597 * 69.66086 * 17 16 14 29 29 H 1.09002 * 109.46977 * 189.66517 * 17 16 14 30 30 H 1.09004 * 109.46706 * 309.66083 * 17 16 14 31 31 H 1.09001 * 113.75889 * 336.24307 * 18 16 14 32 32 H 1.09004 * 113.75438 * 107.60015 * 18 16 14 33 33 H 1.00899 * 111.07056 * 137.51928 * 19 18 16 34 34 H 1.08996 * 113.75636 * 221.08010 * 20 19 18 35 35 H 1.08999 * 113.85821 * 89.73492 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5549 -0.3500 -0.7603 11 1 6.3828 0.9226 -2.8175 12 1 6.5568 2.0740 -0.6903 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0362 3.3376 2.6549 17 6 1.0814 4.3377 3.1535 18 6 -0.4532 2.3606 3.7391 19 7 -1.5108 3.3601 4.0193 20 6 -1.3987 3.8948 2.6442 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.8292 -0.0602 -2.9503 27 1 2.2720 2.1231 1.9978 28 1 1.1034 5.2017 2.4894 29 1 0.8230 4.6609 4.1619 30 1 2.0624 3.8628 3.1644 31 1 -0.8328 1.4189 3.3426 32 1 0.2525 2.2247 4.5586 33 1 -2.4040 2.9129 4.1617 34 1 -1.4472 4.9823 2.5907 35 1 -2.0550 3.4041 1.9255 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399325323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:10 Heat of formation + Delta-G solvation = -39.877300 kcal Electronic energy + Delta-G solvation = -16442.212253 eV Core-core repulsion = 13860.799405 eV Total energy + Delta-G solvation = -2581.412849 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.67969 -39.27711 -36.82588 -34.34820 -33.06233 -31.34943 -28.90714 -27.02279 -26.29515 -25.02117 -23.01675 -21.34802 -20.11949 -18.88993 -17.92151 -17.28382 -16.49941 -16.42455 -15.78503 -15.45942 -14.87158 -14.58578 -14.23437 -14.16092 -13.70834 -13.48166 -13.20904 -13.11378 -12.90641 -12.75003 -12.66470 -12.17242 -12.08417 -11.97176 -11.63985 -11.52039 -11.05146 -10.59587 -10.46639 -9.95317 -9.61884 -8.16436 -6.33869 1.44481 1.45209 1.55526 1.80832 2.35832 2.62479 3.04889 3.13029 3.36985 3.88169 4.10210 4.19015 4.34925 4.47120 4.54606 4.65882 4.73077 4.75135 4.91158 4.93126 5.00582 5.02175 5.06105 5.23525 5.31996 5.42348 5.55626 5.63395 5.78914 5.92951 6.16848 6.23583 6.74729 7.00477 7.33552 7.59181 8.88882 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.039898 B = 0.007537 C = 0.006819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.620909 B = 3714.243189 C = 4105.432356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.004 1.004 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.699 5.699 14 C 0.509 3.491 15 O -0.589 6.589 16 C -0.116 4.116 17 C -0.115 4.115 18 C 0.030 3.970 19 N -0.623 5.623 20 C 0.030 3.970 21 H 0.043 0.957 22 H 0.024 0.976 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.071 0.929 26 H 0.265 0.735 27 H 0.402 0.598 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.330 0.670 34 H 0.099 0.901 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.258 3.717 12.239 13.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.014 0.986 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.348 5.348 14 C 0.295 3.705 15 O -0.471 6.471 16 C -0.120 4.120 17 C -0.172 4.172 18 C -0.100 4.100 19 N -0.248 5.248 20 C -0.100 4.100 21 H 0.062 0.938 22 H 0.043 0.957 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.237 0.763 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.117 0.883 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.437 4.184 11.935 13.403 hybrid contribution 0.624 -0.886 -1.130 1.566 sum -3.813 3.298 10.805 11.923 Atomic orbital electron populations 1.21668 0.97040 0.99079 1.00149 1.21780 0.93698 0.99214 1.01287 1.18359 0.93603 0.89158 0.81487 0.98615 1.21590 0.91488 1.38853 1.06681 0.91056 1.25767 1.03281 0.94397 0.95016 1.70048 1.37063 1.38435 1.09877 0.85386 0.79177 0.78898 0.77131 1.19640 1.21325 1.18886 1.46262 1.15503 1.55689 1.17299 1.20940 0.81667 0.78302 0.89571 1.90638 1.52611 1.61591 1.42249 1.22704 0.98281 0.98580 0.92414 1.21500 0.96387 0.96965 1.02367 1.23758 0.95823 0.93660 0.96801 1.66915 1.09157 1.24618 1.24152 1.23610 0.93587 1.02076 0.90745 0.93786 0.95716 0.93578 0.94000 0.91096 0.92623 0.76327 0.92396 0.89099 0.91430 0.91912 0.86724 0.85651 0.88311 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.51 71.98 0.61 -4.85 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.28 14.14 2.24 44.24 0.10 14.24 16 4 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 5 C -0.55 -28.80 8.73 25.60 0.22 -28.58 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.83 5.29 84.65 0.45 1.27 16 8 N -0.92 -52.34 11.29 21.45 0.24 -52.10 16 9 Si 0.97 41.83 29.54 68.60 2.03 43.85 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 13 N -0.70 -28.39 4.91 -446.10 -2.19 -30.58 16 14 C 0.51 19.66 5.49 87.66 0.48 20.14 16 15 O -0.59 -27.67 13.04 -3.03 -0.04 -27.71 16 16 C -0.12 -3.23 1.28 -52.28 -0.07 -3.29 16 17 C -0.11 -2.67 9.04 71.98 0.65 -2.02 16 18 C 0.03 0.69 8.02 86.36 0.69 1.38 16 19 N -0.62 -13.43 8.39 -522.79 -4.39 -17.82 16 20 C 0.03 0.79 7.81 86.41 0.68 1.46 16 21 H 0.04 1.87 5.64 -2.39 -0.01 1.86 16 22 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 23 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.07 3.91 5.95 -2.39 -0.01 3.89 16 26 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 27 H 0.40 13.97 7.53 -92.70 -0.70 13.27 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 29 H 0.09 1.78 8.00 -2.39 -0.02 1.76 16 30 H 0.07 1.51 7.12 -2.39 -0.02 1.49 16 31 H 0.06 1.55 8.09 -2.39 -0.02 1.53 16 32 H 0.11 2.19 8.10 -2.38 -0.02 2.17 16 33 H 0.33 6.08 8.92 -89.69 -0.80 5.28 16 34 H 0.10 2.36 8.10 -2.39 -0.02 2.34 16 35 H 0.06 1.89 7.43 -2.39 -0.02 1.87 16 Total: -1.00 -63.61 281.14 -0.77 -64.38 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -0.40 Total: 25.97 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 3.98 Total: -5.99 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -6.34 Total: -100.50 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.04 Total: -27.71 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -63.61 -0.77 -64.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399325323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.500 kcal (2) G-P(sol) polarization free energy of solvation -63.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds