Wall clock time and date at job start Mon Mar 30 2020 02:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 H 1.09005 * 109.47189 * 54.99719 * 3 2 1 5 5 C 1.50694 * 109.47453 * 175.00107 * 3 2 1 6 6 H 1.08001 * 120.00329 * 119.99598 * 5 3 2 7 7 C 1.37879 * 119.99654 * 300.00211 * 5 3 2 8 8 N 1.31508 * 120.00407 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47299 * 89.99452 * 9 7 5 11 11 H 1.48495 * 109.47254 * 209.99850 * 9 7 5 12 12 H 1.48505 * 109.47246 * 330.00221 * 9 7 5 13 13 N 1.46506 * 109.47182 * 295.00131 * 3 2 1 14 14 C 1.34773 * 119.99969 * 84.72073 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 H 1.08996 * 109.46535 * 40.00110 * 16 14 13 18 18 N 1.46898 * 109.47330 * 160.00278 * 16 14 13 19 19 C 1.53001 * 109.47002 * 280.00433 * 16 14 13 20 20 C 1.52998 * 117.49809 * 248.74330 * 19 16 14 21 21 C 1.53002 * 117.49586 * 180.08520 * 19 16 14 22 22 H 1.09003 * 109.46810 * 300.00543 * 1 2 3 23 23 H 1.09007 * 109.47086 * 59.99509 * 1 2 3 24 24 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47116 * 239.99782 * 2 1 3 26 26 H 1.08996 * 109.46851 * 119.99791 * 2 1 3 27 27 H 0.97000 * 120.00744 * 180.02562 * 8 7 5 28 28 H 0.97005 * 119.99811 * 265.00126 * 13 3 2 29 29 H 1.00902 * 110.99885 * 60.00081 * 18 16 14 30 30 H 1.00894 * 110.99573 * 183.95414 * 18 16 14 31 31 H 1.09004 * 115.55025 * 34.41466 * 19 16 14 32 32 H 1.09002 * 117.50105 * 0.02562 * 20 19 16 33 33 H 1.09000 * 117.49856 * 145.01806 * 20 19 16 34 34 H 1.08997 * 117.49445 * 214.97811 * 21 19 16 35 35 H 1.08994 * 117.50021 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.4428 2.1128 2.0836 11 1 6.4390 -0.3112 2.1545 12 1 6.6132 0.8394 0.0270 13 7 1.6525 2.0975 -1.2518 14 6 0.4332 2.6595 -1.3689 15 8 -0.3431 2.6234 -0.4378 16 6 0.0342 3.3328 -2.6568 17 1 0.3980 2.7469 -3.5008 18 7 -1.4298 3.4323 -2.7243 19 6 0.6437 4.7352 -2.7091 20 6 -0.3126 5.9253 -2.6091 21 6 0.3513 5.5868 -3.9462 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8292 -0.0605 2.9502 28 1 2.2720 2.1231 -1.9978 29 1 -1.7916 3.9714 -1.9519 30 1 -1.7253 3.8218 -3.6069 31 1 1.6258 4.8386 -2.2476 32 1 -1.3760 5.7092 -2.5055 33 1 0.0403 6.8117 -2.0820 34 1 1.1408 6.2507 -4.2982 35 1 -0.2749 5.1478 -4.7228 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399361325.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:11 Heat of formation + Delta-G solvation = -18.884971 kcal Electronic energy + Delta-G solvation = -16179.609116 eV Core-core repulsion = 13599.106563 eV Total energy + Delta-G solvation = -2580.502553 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.51898 -37.52306 -34.96920 -32.52864 -32.31423 -30.84677 -27.50487 -26.00226 -22.97382 -22.53974 -21.18942 -19.68703 -19.14661 -17.40117 -16.11130 -15.99498 -15.52486 -14.85480 -14.42738 -14.21655 -14.01326 -12.97123 -12.64905 -12.53599 -12.10553 -11.70883 -11.61654 -11.34177 -11.21812 -10.94470 -10.80999 -10.57704 -10.30574 -10.19560 -10.10782 -9.55408 -9.01937 -8.97648 -8.54442 -8.43747 -7.74646 -6.10178 -4.19599 3.24917 3.31662 3.33299 3.40885 3.66802 4.10232 4.38310 4.63796 4.74884 4.88039 4.98204 5.20766 5.30998 5.47403 5.61722 5.71311 5.77961 5.95480 6.07709 6.46987 6.55381 6.74532 7.10425 7.14320 7.28062 7.43854 7.50630 7.54538 7.66058 7.79289 7.94628 8.22471 8.73593 8.81934 9.22069 9.48293 10.95094 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.032453 B = 0.007453 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.568652 B = 3755.794267 C = 4370.176831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.709 5.709 14 C 0.512 3.488 15 O -0.539 6.539 16 C 0.102 3.898 17 H 0.099 0.901 18 N -0.825 5.825 19 C -0.180 4.180 20 C -0.181 4.181 21 C -0.177 4.177 22 H 0.048 0.952 23 H 0.043 0.957 24 H 0.021 0.979 25 H 0.030 0.970 26 H 0.098 0.902 27 H 0.264 0.736 28 H 0.387 0.613 29 H 0.352 0.648 30 H 0.338 0.662 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.249 7.155 -10.658 13.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.296 3.704 15 O -0.417 6.417 16 C -0.014 4.014 17 H 0.117 0.883 18 N -0.357 5.357 19 C -0.201 4.201 20 C -0.219 4.219 21 C -0.215 4.215 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.040 0.960 25 H 0.049 0.951 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.219 0.781 29 H 0.168 0.832 30 H 0.151 0.849 31 H 0.131 0.869 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.792 6.206 -9.685 12.461 hybrid contribution 1.569 1.025 -0.349 1.906 sum -3.223 7.231 -10.034 12.781 Atomic orbital electron populations 1.21846 0.98187 0.97988 1.01475 1.21929 0.92750 0.99809 1.02139 1.18750 0.94030 0.89183 0.81041 0.93466 1.21246 0.90820 1.38938 1.06224 0.92147 1.24886 0.98519 0.94844 0.95440 1.69896 1.35090 1.37655 1.09307 0.86477 0.84991 0.77624 0.78166 1.20626 1.21063 1.19872 1.46465 1.14441 1.56321 1.18487 1.20005 0.82658 0.79247 0.88482 1.90647 1.51158 1.59549 1.40303 1.20967 0.88986 0.93322 0.98087 0.88326 1.58564 1.07772 1.61629 1.07736 1.23149 1.01609 0.92594 1.02733 1.23052 0.98779 0.99482 1.00539 1.22982 1.03687 1.03527 0.91263 0.93306 0.93813 0.96006 0.95113 0.88432 0.92586 0.78118 0.83170 0.84859 0.86927 0.88650 0.88594 0.88637 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.51 37.16 0.32 -2.88 16 2 C -0.13 -3.17 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.88 2.24 -69.08 -0.15 6.73 16 4 H 0.05 1.39 7.59 -51.93 -0.39 1.00 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.43 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.89 11.29 55.43 0.63 -24.27 16 9 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.71 -14.66 5.03 -54.93 -0.28 -14.94 16 14 C 0.51 10.13 5.63 -10.98 -0.06 10.06 16 15 O -0.54 -12.64 13.35 5.56 0.07 -12.57 16 16 C 0.10 1.49 3.53 -68.86 -0.24 1.24 16 17 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 18 N -0.82 -11.16 8.28 -5.65 -0.05 -11.21 16 19 C -0.18 -2.29 5.69 -90.62 -0.52 -2.80 16 20 C -0.18 -1.98 9.62 -26.69 -0.26 -2.24 16 21 C -0.18 -1.73 9.94 -26.69 -0.27 -1.99 16 22 H 0.05 1.20 7.84 -51.93 -0.41 0.80 16 23 H 0.04 1.00 5.62 -51.92 -0.29 0.71 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.39 6.99 8.54 -40.82 -0.35 6.64 16 29 H 0.35 4.99 7.09 -39.29 -0.28 4.71 16 30 H 0.34 3.52 8.01 -39.29 -0.31 3.20 16 31 H 0.11 1.57 8.11 -51.93 -0.42 1.14 16 32 H 0.10 0.98 6.15 -51.93 -0.32 0.66 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.80 7.73 -51.93 -0.40 0.39 16 LS Contribution 282.82 15.07 4.26 4.26 Total: -1.00 -29.95 282.82 -7.24 -37.19 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -5.14 Total: 13.82 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.72 Total: -7.92 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.30 Total: -50.42 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.95 -7.24 -37.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399361325.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.309 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds