Wall clock time and date at job start Mon Mar 30 2020 02:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.47002 * 2 1 4 4 H 1.09005 * 109.46839 * 55.00383 * 3 2 1 5 5 N 1.46895 * 109.47273 * 294.99951 * 3 2 1 6 6 C 1.50696 * 109.46928 * 174.99807 * 3 2 1 7 7 O 1.21281 * 119.99970 * 100.00324 * 6 3 2 8 8 N 1.34781 * 120.00193 * 280.00470 * 6 3 2 9 9 C 1.46506 * 119.99781 * 180.02562 * 8 6 3 10 10 C 1.53009 * 109.46619 * 178.27823 * 9 8 6 11 11 C 1.50698 * 115.54916 * 65.13855 * 10 9 8 12 12 H 1.08001 * 120.00164 * 265.39992 * 11 10 9 13 13 C 1.37875 * 119.99921 * 85.40362 * 11 10 9 14 14 N 1.31516 * 120.00178 * 353.55294 * 13 11 10 15 15 Si 1.86801 * 119.99988 * 173.55053 * 13 11 10 16 16 H 1.48499 * 109.47110 * 89.99943 * 15 13 11 17 17 H 1.48500 * 109.47515 * 210.00076 * 15 13 11 18 18 H 1.48499 * 109.47154 * 330.00057 * 15 13 11 19 19 C 1.52998 * 117.49795 * 279.46609 * 10 9 8 20 20 C 1.52996 * 117.49229 * 210.80763 * 10 9 8 21 21 H 1.08994 * 109.46954 * 60.00132 * 1 2 3 22 22 H 1.09002 * 109.46606 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46827 * 299.99719 * 1 2 3 24 24 H 1.08998 * 109.46913 * 239.99761 * 2 1 3 25 25 H 1.09001 * 109.46964 * 120.00248 * 2 1 3 26 26 H 1.00901 * 111.00452 * 299.99860 * 5 3 2 27 27 H 1.00902 * 111.00230 * 63.95541 * 5 3 2 28 28 H 0.96996 * 119.99990 * 359.97438 * 8 6 3 29 29 H 1.08997 * 109.46946 * 298.26843 * 9 8 6 30 30 H 1.08992 * 109.47283 * 58.27784 * 9 8 6 31 31 H 0.96998 * 119.99857 * 185.06997 * 14 13 11 32 32 H 1.09004 * 117.49743 * 0.02562 * 19 10 9 33 33 H 1.09001 * 117.50019 * 145.02292 * 19 10 9 34 34 H 1.09005 * 117.49479 * 214.97519 * 20 10 9 35 35 H 1.08996 * 117.50530 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6515 2.0992 -1.2552 6 6 3.5419 1.4443 0.1239 7 8 4.2315 1.5973 -0.8620 8 7 4.1188 1.2758 1.3303 9 6 5.5789 1.2781 1.4507 10 6 5.9696 1.1123 2.9207 11 6 5.5966 -0.2063 3.5477 12 1 4.6708 -0.3010 4.0959 13 6 6.4371 -1.2919 3.4215 14 7 7.4996 -1.2148 2.6503 15 14 6.0667 -2.8723 4.3460 16 1 5.2134 -3.7495 3.5048 17 1 7.3384 -3.5721 4.6595 18 1 5.3538 -2.5518 5.6086 19 6 5.9194 2.3566 3.8096 20 6 7.2692 1.7728 3.3850 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.0423 1.6180 -2.0513 27 1 0.6477 2.1684 -1.3315 28 1 3.5674 1.1537 2.1188 29 1 5.9927 0.4539 0.8697 30 1 5.9731 2.2219 1.0742 31 1 8.0501 -1.9998 2.5032 32 1 5.6076 3.2931 3.3473 33 1 5.6169 2.2214 4.8481 34 1 7.8542 1.2538 4.1443 35 1 7.8461 2.3250 2.6432 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404121386.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:34 Heat of formation + Delta-G solvation = -50.911051 kcal Electronic energy + Delta-G solvation = -15945.877714 eV Core-core repulsion = 13363.986406 eV Total energy + Delta-G solvation = -2581.891308 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.82577 -38.57877 -36.80265 -34.93159 -33.97127 -31.67342 -28.93373 -27.54642 -26.08577 -23.04882 -22.73873 -21.33953 -20.79087 -18.63097 -18.03054 -16.84970 -16.65855 -16.19433 -16.02332 -15.68319 -15.30428 -14.87362 -14.67139 -14.33265 -13.68916 -13.46791 -13.19196 -12.97234 -12.91666 -12.83759 -12.36085 -12.32419 -12.04778 -11.88007 -11.50259 -10.86794 -10.82039 -10.46494 -10.05945 -9.84564 -9.63218 -8.10263 -6.23728 1.41389 1.44594 1.52886 1.74190 2.33287 2.42769 3.17950 3.47854 3.68278 3.87651 3.95112 4.07611 4.24565 4.46215 4.52614 4.55231 4.64961 4.72569 4.79121 4.99010 5.03621 5.09741 5.12433 5.26299 5.33268 5.57413 5.59888 5.68525 5.77740 6.07980 6.36176 6.59746 6.79243 6.85171 7.41337 7.46110 8.97425 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.008120 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.355645 B = 3447.289808 C = 4098.410202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.152 4.152 3 C 0.088 3.912 4 H 0.123 0.877 5 N -0.834 5.834 6 C 0.503 3.497 7 O -0.593 6.593 8 N -0.697 5.697 9 C 0.180 3.820 10 C 0.005 3.995 11 C -0.504 4.504 12 H 0.066 0.934 13 C 0.024 3.976 14 N -0.909 5.909 15 Si 0.950 3.050 16 H -0.279 1.279 17 H -0.291 1.291 18 H -0.262 1.262 19 C -0.176 4.176 20 C -0.161 4.161 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.346 0.654 27 H 0.361 0.639 28 H 0.410 0.590 29 H 0.027 0.973 30 H 0.031 0.969 31 H 0.259 0.741 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.659 2.930 -1.422 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.192 4.192 3 C -0.027 4.027 4 H 0.140 0.860 5 N -0.368 5.368 6 C 0.290 3.710 7 O -0.474 6.474 8 N -0.347 5.347 9 C 0.056 3.944 10 C 0.004 3.996 11 C -0.542 4.542 12 H 0.084 0.916 13 C -0.177 4.177 14 N -0.547 5.547 15 Si 0.776 3.224 16 H -0.205 1.205 17 H -0.217 1.217 18 H -0.186 1.186 19 C -0.213 4.213 20 C -0.200 4.200 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.160 0.840 27 H 0.178 0.822 28 H 0.246 0.754 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.581 3.598 -1.833 13.213 hybrid contribution -0.013 -2.035 0.358 2.067 sum -12.594 1.563 -1.475 12.776 Atomic orbital electron populations 1.21750 0.92360 1.02963 1.03061 1.22234 0.98806 0.95431 1.02753 1.21325 0.89383 0.95596 0.96376 0.85951 1.58515 1.17011 1.58235 1.03001 1.21325 0.91809 0.75297 0.82585 1.90612 1.66387 1.51805 1.38595 1.45843 1.07788 1.71493 1.09566 1.20523 0.79707 0.97189 0.97010 1.19070 0.98557 0.92081 0.89853 1.20668 1.05587 0.94205 1.33699 0.91576 1.25727 0.94542 1.01733 0.95699 1.70113 1.16714 1.29981 1.37869 0.85678 0.77266 0.79889 0.79557 1.20480 1.21678 1.18642 1.23014 1.00873 0.97110 1.00280 1.22437 0.91007 1.03780 1.02727 0.91513 0.91699 0.91001 0.92788 0.91377 0.84044 0.82248 0.75436 0.95469 0.95030 0.93246 0.89383 0.89353 0.91739 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.68 71.99 0.70 -1.49 16 2 C -0.15 -3.44 5.56 30.60 0.17 -3.27 16 3 C 0.09 2.26 3.21 44.17 0.14 2.41 16 4 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 5 N -0.83 -19.85 8.94 -171.82 -1.54 -21.39 16 6 C 0.50 18.81 7.08 87.66 0.62 19.43 16 7 O -0.59 -27.39 16.25 -3.03 -0.05 -27.44 16 8 N -0.70 -26.82 5.48 -463.04 -2.54 -29.36 16 9 C 0.18 8.41 5.50 86.38 0.48 8.88 16 10 C 0.01 0.24 1.38 -52.93 -0.07 0.17 16 11 C -0.50 -25.48 8.63 25.60 0.22 -25.26 16 12 H 0.07 3.19 7.82 -2.91 -0.02 3.17 16 13 C 0.02 1.25 5.39 84.65 0.46 1.70 16 14 N -0.91 -51.58 12.91 21.45 0.28 -51.31 16 15 Si 0.95 41.79 29.55 68.60 2.03 43.82 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 17 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 18 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 19 C -0.18 -6.98 9.96 30.62 0.30 -6.67 16 20 C -0.16 -7.41 9.42 30.62 0.29 -7.12 16 21 H 0.07 0.83 6.87 -2.39 -0.02 0.81 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.35 8.92 8.58 -89.69 -0.77 8.15 16 27 H 0.36 5.97 7.55 -89.69 -0.68 5.30 16 28 H 0.41 13.85 8.37 -92.71 -0.78 13.07 16 29 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.03 1.48 8.09 -2.39 -0.02 1.46 16 31 H 0.26 14.17 8.32 -92.71 -0.77 13.40 16 32 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 33 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.06 3.18 8.14 -2.38 -0.02 3.16 16 35 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -64.26 297.26 0.36 -63.90 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -1.13 Total: 33.01 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 3.30 Total: -11.23 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -3.79 Total: -102.05 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -64.26 0.36 -63.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404121386.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.987 kcal (2) G-P(sol) polarization free energy of solvation -64.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds