Wall clock time and date at job start Mon Mar 30 2020 03:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 115.55911 * 2 1 4 4 C 1.53000 * 117.50223 * 214.31310 * 2 1 3 5 5 C 1.52997 * 117.49889 * 145.68572 * 2 1 3 6 6 H 1.08997 * 117.50044 * 214.98097 * 5 2 1 7 7 N 1.46502 * 117.51657 * 0.02562 * 5 2 1 8 8 C 1.34780 * 119.99948 * 205.01835 * 7 5 2 9 9 O 1.21285 * 119.99465 * 359.97438 * 8 7 5 10 10 C 1.50698 * 119.99904 * 180.02562 * 8 7 5 11 11 H 1.08997 * 109.47280 * 39.99711 * 10 8 7 12 12 N 1.46905 * 109.47039 * 159.99813 * 10 8 7 13 13 C 1.53000 * 109.47064 * 279.99334 * 10 8 7 14 14 C 1.52998 * 109.47172 * 175.00226 * 13 10 8 15 15 C 1.50700 * 109.46890 * 180.02562 * 14 13 10 16 16 H 1.08001 * 120.00274 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99868 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99870 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99782 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46929 * 90.00009 * 19 17 15 21 21 H 1.48496 * 109.46897 * 209.99772 * 19 17 15 22 22 H 1.48498 * 109.46997 * 329.99736 * 19 17 15 23 23 H 1.08998 * 109.46673 * 154.29083 * 1 2 3 24 24 H 1.08994 * 109.47426 * 274.29872 * 1 2 3 25 25 H 1.09000 * 109.47070 * 34.29646 * 1 2 3 26 26 H 1.08990 * 117.49990 * 145.01974 * 4 2 1 27 27 H 1.09004 * 117.49237 * 359.97438 * 4 2 1 28 28 H 0.96999 * 119.99988 * 25.01453 * 7 5 2 29 29 H 1.00901 * 110.99683 * 296.04953 * 12 10 8 30 30 H 1.00900 * 110.99748 * 59.99729 * 12 10 8 31 31 H 1.08999 * 109.47459 * 295.00678 * 13 10 8 32 32 H 1.09005 * 109.46850 * 55.00210 * 13 10 8 33 33 H 1.09005 * 109.46835 * 300.00036 * 14 13 10 34 34 H 1.08996 * 109.47283 * 60.00519 * 14 13 10 35 35 H 0.97005 * 119.99488 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2364 -1.1209 0.7650 6 1 3.1715 -0.8751 1.2683 7 7 1.3965 -2.1126 1.4412 8 6 1.8765 -2.7914 2.5021 9 8 3.0040 -2.5814 2.8966 10 6 1.0127 -3.8119 3.1972 11 1 0.4495 -4.3774 2.4549 12 7 1.8624 -4.7282 3.9695 13 6 0.0412 -3.1000 4.1408 14 6 -0.9180 -4.1232 4.7523 15 6 -1.8752 -3.4218 5.6812 16 1 -1.8060 -2.3532 5.8218 17 6 -2.8393 -4.1443 6.3517 18 7 -3.6743 -3.5323 7.1627 19 14 -2.9594 -5.9925 6.1080 20 1 -2.1029 -6.6802 7.1074 21 1 -4.3693 -6.4243 6.2837 22 1 -2.5014 -6.3421 4.7393 23 1 -0.3632 -0.9259 -0.4458 24 1 -0.3634 0.0770 1.0247 25 1 -0.3633 0.8490 -0.5791 26 1 3.1715 -0.8751 -1.2682 27 1 1.6112 -1.8586 -1.2680 28 1 0.4949 -2.2807 1.1255 29 1 2.4690 -5.2578 3.3615 30 1 2.3952 -4.2276 4.6650 31 1 0.6017 -2.6073 4.9353 32 1 -0.5280 -2.3564 3.5829 33 1 -1.4785 -4.6158 3.9577 34 1 -0.3488 -4.8667 5.3102 35 1 -4.3528 -4.0406 7.6341 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591598287.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:28 Heat of formation + Delta-G solvation = -30.821032 kcal Electronic energy + Delta-G solvation = -15544.659333 eV Core-core repulsion = 12963.639194 eV Total energy + Delta-G solvation = -2581.020139 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.02804 -37.87305 -35.30642 -32.99525 -32.74500 -30.49416 -28.71484 -26.82019 -23.99826 -22.00853 -20.84733 -20.18727 -19.93340 -17.41253 -16.70312 -16.26543 -15.74322 -15.01602 -14.57342 -14.34098 -14.08244 -13.51715 -13.30894 -12.75007 -12.60781 -12.50544 -12.34981 -11.74879 -11.69528 -11.22625 -10.99217 -10.87944 -10.38394 -10.24016 -10.00953 -9.71549 -9.59954 -9.11585 -8.78863 -8.51979 -8.40458 -5.99434 -3.97031 2.60738 3.10308 3.37619 3.44072 3.49346 3.67016 4.46842 4.51327 4.65656 4.72920 4.75263 4.96627 5.06570 5.34718 5.39185 5.48493 5.56657 5.58719 5.66777 5.73268 5.84789 6.03816 6.28416 6.42847 6.49039 6.87129 7.23689 7.38077 7.49267 7.57597 7.65727 7.86329 8.23136 8.58097 9.05340 9.63618 11.14088 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.032831 B = 0.005901 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.656852 B = 4743.956144 C = 5231.192429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.163 4.163 3 H 0.110 0.890 4 C -0.193 4.193 5 C 0.082 3.918 6 H 0.134 0.866 7 N -0.700 5.700 8 C 0.488 3.512 9 O -0.551 6.551 10 C 0.075 3.925 11 H 0.098 0.902 12 N -0.811 5.811 13 C -0.087 4.087 14 C -0.004 4.004 15 C -0.522 4.522 16 H 0.069 0.931 17 C 0.066 3.934 18 N -0.906 5.906 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.265 1.265 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.404 0.596 29 H 0.335 0.665 30 H 0.350 0.650 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.013 0.987 34 H 0.030 0.970 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.746 3.151 -15.912 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.182 4.182 3 H 0.128 0.872 4 C -0.231 4.231 5 C -0.025 4.025 6 H 0.152 0.848 7 N -0.351 5.351 8 C 0.274 3.726 9 O -0.429 6.429 10 C -0.041 4.041 11 H 0.116 0.884 12 N -0.339 5.339 13 C -0.126 4.126 14 C -0.042 4.042 15 C -0.560 4.560 16 H 0.087 0.913 17 C -0.135 4.135 18 N -0.546 5.546 19 Si 0.710 3.290 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.189 1.189 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.239 0.761 29 H 0.147 0.853 30 H 0.164 0.836 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.048 0.952 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.717 2.891 -15.228 18.294 hybrid contribution 0.223 -0.331 -0.717 0.821 sum 9.940 2.560 -15.945 18.963 Atomic orbital electron populations 1.21345 0.92396 1.02117 1.02653 1.22800 0.96110 0.94961 1.04373 0.87214 1.23577 1.02988 1.01578 0.94982 1.21671 0.97180 0.92823 0.90820 0.84842 1.45553 1.17542 1.40075 1.31885 1.22671 0.88465 0.82307 0.79179 1.90644 1.20288 1.66919 1.65015 1.21869 0.94383 0.91409 0.96390 0.88398 1.59041 1.29516 1.27646 1.17659 1.21473 0.95630 0.98648 0.96803 1.19487 0.93840 0.94867 0.95992 1.21183 1.13933 0.96133 1.24711 0.91300 1.25015 0.95343 0.98458 0.94674 1.69925 1.19457 1.36092 1.29102 0.86732 0.76797 0.86072 0.79378 1.20260 1.21717 1.18920 0.92482 0.91442 0.91800 0.88268 0.88527 0.76094 0.85290 0.83562 0.92169 0.92184 0.96908 0.95212 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 9.19 37.16 0.34 -0.77 16 2 C -0.16 -1.47 6.41 -90.62 -0.58 -2.05 16 3 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.19 -1.68 10.10 -26.73 -0.27 -1.95 16 5 C 0.08 0.92 6.41 -67.93 -0.44 0.48 16 6 H 0.13 1.68 7.40 -51.93 -0.38 1.30 16 7 N -0.70 -8.61 5.34 -53.80 -0.29 -8.89 16 8 C 0.49 7.42 7.07 -10.99 -0.08 7.35 16 9 O -0.55 -9.92 15.82 5.55 0.09 -9.83 16 10 C 0.08 1.18 3.15 -68.86 -0.22 0.97 16 11 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 12 N -0.81 -12.71 8.44 -5.65 -0.05 -12.75 16 13 C -0.09 -1.68 4.78 -26.73 -0.13 -1.81 16 14 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 15 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 16 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.91 -28.17 13.96 55.43 0.77 -27.40 16 19 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 23 H 0.06 0.46 7.61 -51.93 -0.40 0.06 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 28 H 0.40 4.26 7.70 -40.82 -0.31 3.95 16 29 H 0.34 4.52 9.06 -39.29 -0.36 4.16 16 30 H 0.35 5.63 8.58 -39.29 -0.34 5.29 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 34 H 0.03 0.72 7.18 -51.93 -0.37 0.35 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 294.01 15.07 4.43 4.43 Total: -1.00 -32.57 294.01 -7.12 -39.69 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.50 Total: 8.78 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.91 Total: -11.36 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.44 Total: -49.04 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.57 -7.12 -39.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591598287.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.864 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds