Wall clock time and date at job start Mon Mar 30 2020 04:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.47135 * 2 1 4 4 C 1.50701 * 109.46741 * 240.00426 * 2 1 3 5 5 H 1.08000 * 119.99886 * 239.99510 * 4 2 1 6 6 C 1.37878 * 119.99843 * 60.00150 * 4 2 1 7 7 N 1.31511 * 120.00563 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99603 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47001 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46684 * 120.00082 * 8 6 4 11 11 H 1.48497 * 109.47076 * 239.99927 * 8 6 4 12 12 N 1.46891 * 109.46992 * 120.00246 * 2 1 3 13 13 C 1.45562 * 111.00231 * 326.16041 * 12 2 1 14 14 C 1.53060 * 110.81089 * 300.55623 * 13 12 2 15 15 N 1.47308 * 108.53635 * 274.20773 * 14 13 12 16 16 C 1.33628 * 120.07029 * 70.75627 * 15 14 13 17 17 O 1.21278 * 120.05081 * 179.70034 * 16 15 14 18 18 C 1.51485 * 119.89652 * 359.71224 * 16 15 14 19 19 C 1.45583 * 110.99978 * 195.56562 * 12 2 1 20 20 H 1.09002 * 109.23582 * 179.97438 * 19 12 2 21 21 C 1.52994 * 109.23544 * 299.38765 * 19 12 2 22 22 H 1.08998 * 109.47038 * 185.15800 * 1 2 3 23 23 H 1.09005 * 109.46554 * 305.16019 * 1 2 3 24 24 H 1.09003 * 109.46860 * 65.15309 * 1 2 3 25 25 H 0.96997 * 120.00177 * 180.02562 * 7 6 4 26 26 H 1.08992 * 109.20467 * 60.88668 * 13 12 2 27 27 H 1.09002 * 109.19983 * 180.22854 * 13 12 2 28 28 H 1.08995 * 109.62624 * 33.96843 * 14 13 12 29 29 H 1.09000 * 109.62057 * 154.52959 * 14 13 12 30 30 H 0.97006 * 119.98081 * 250.75261 * 15 14 13 31 31 H 1.09002 * 109.68351 * 170.27901 * 18 16 15 32 32 H 1.08998 * 109.71532 * 49.73809 * 18 16 15 33 33 H 1.09002 * 109.47120 * 60.00159 * 21 19 12 34 34 H 1.09004 * 109.47386 * 179.97438 * 21 19 12 35 35 H 1.08993 * 109.47490 * 299.99668 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2391 -2.4828 7 7 0.9428 0.8299 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 3.1473 -2.2862 -3.6040 10 1 1.1676 -1.5862 -4.8166 11 1 3.1471 -0.1855 -4.8162 12 7 2.0197 -0.6925 1.1993 13 6 1.1294 -0.4712 2.3295 14 6 1.0132 1.0217 2.6460 15 7 2.1234 1.3992 3.5376 16 6 3.3737 1.4438 3.0681 17 8 4.2867 1.7599 3.8011 18 6 3.6487 1.0992 1.6189 19 6 3.4280 -0.4044 1.4298 20 1 3.7606 -0.9309 2.3244 21 6 4.2442 -0.8866 0.2289 22 1 -0.3633 -1.0235 0.0924 23 1 -0.3632 0.5918 0.8402 24 1 -0.3633 0.4318 -0.9326 25 1 0.7081 1.1611 -3.4843 26 1 0.1416 -0.8649 2.0902 27 1 1.5215 -0.9933 3.2023 28 1 1.0725 1.5975 1.7225 29 1 0.0628 1.2177 3.1424 30 1 1.9469 1.6158 4.4666 31 1 4.6792 1.3532 1.3703 32 1 2.9680 1.6542 0.9734 33 1 3.9078 -0.3700 -0.6701 34 1 5.2996 -0.6723 0.3972 35 1 4.1067 -1.9605 0.1037 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606269316.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:23 Heat of formation + Delta-G solvation = -14.807204 kcal Electronic energy + Delta-G solvation = -17111.190513 eV Core-core repulsion = 14530.864785 eV Total energy + Delta-G solvation = -2580.325728 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.21100 -37.69337 -34.69042 -33.13320 -32.03113 -28.94582 -27.69277 -26.86445 -24.88983 -22.96957 -21.39049 -19.57257 -18.44953 -17.02876 -16.81858 -15.92198 -15.10788 -14.74263 -14.43477 -14.19032 -13.51464 -13.10284 -12.49663 -12.42290 -12.13349 -11.85381 -11.38347 -11.33243 -11.06501 -10.91750 -10.66449 -10.50016 -10.45271 -10.21407 -10.03756 -9.56212 -9.36325 -9.07881 -8.80597 -8.40835 -7.11894 -6.06167 -4.05408 2.98198 3.26835 3.36174 3.40014 3.60960 4.35813 4.75981 4.92812 5.22581 5.36143 5.49275 5.51325 5.71163 5.77199 5.85818 6.05475 6.32479 6.35087 6.43035 6.56362 6.64587 6.81570 6.88618 6.97733 7.07021 7.33997 7.45243 7.52768 7.68087 7.82703 8.23557 8.26831 8.53093 8.55098 8.97419 9.54734 10.99639 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.036823 B = 0.009634 C = 0.008610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.208982 B = 2905.589930 C = 3251.107170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.208 3.792 3 H 0.012 0.988 4 C -0.494 4.494 5 H 0.075 0.925 6 C 0.055 3.945 7 N -0.894 5.894 8 Si 0.892 3.108 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.548 5.548 13 C 0.051 3.949 14 C 0.065 3.935 15 N -0.727 5.727 16 C 0.521 3.479 17 O -0.567 6.567 18 C -0.181 4.181 19 C 0.121 3.879 20 H 0.058 0.942 21 C -0.155 4.155 22 H 0.035 0.965 23 H 0.012 0.988 24 H 0.089 0.911 25 H 0.259 0.741 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.393 0.607 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.032 0.968 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.861 -0.454 6.762 6.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.103 3.897 3 H 0.030 0.970 4 C -0.532 4.532 5 H 0.093 0.907 6 C -0.146 4.146 7 N -0.534 5.534 8 Si 0.720 3.280 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.271 5.271 13 C -0.079 4.079 14 C -0.061 4.061 15 N -0.379 5.379 16 C 0.309 3.691 17 O -0.447 6.447 18 C -0.222 4.222 19 C 0.011 3.989 20 H 0.076 0.924 21 C -0.212 4.212 22 H 0.054 0.946 23 H 0.031 0.969 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.228 0.772 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.051 0.949 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.446 -0.713 6.697 6.750 hybrid contribution 0.030 0.552 -0.298 0.628 sum -0.417 -0.160 6.399 6.414 Atomic orbital electron populations 1.22128 0.98092 0.98985 1.01357 1.19358 0.91747 0.92573 0.86039 0.97049 1.21436 1.30167 1.12398 0.89239 0.90685 1.24946 0.95419 0.95250 0.98995 1.69871 1.37005 1.23171 1.23349 0.86531 0.78622 0.79754 0.83110 1.19605 1.21200 1.21222 1.60126 1.00243 1.62121 1.04626 1.22280 0.99043 0.92576 0.94016 1.22866 0.88726 0.99405 0.95085 1.46094 1.07629 1.70230 1.13942 1.20917 0.82006 0.75153 0.91051 1.90674 1.44206 1.49346 1.60448 1.22914 1.04922 1.02157 0.92245 1.20964 0.89440 0.89822 0.98678 0.92404 1.22457 0.95973 1.02233 1.00504 0.94639 0.96901 0.89230 0.93065 0.89368 0.92064 0.89407 0.90072 0.77226 0.88784 0.87841 0.87150 0.94903 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 7.61 37.16 0.28 -2.85 16 2 C 0.21 4.56 1.22 -68.86 -0.08 4.48 16 3 H 0.01 0.29 4.86 -51.93 -0.25 0.04 16 4 C -0.49 -12.10 5.89 -34.44 -0.20 -12.30 16 5 H 0.08 1.86 5.60 -52.49 -0.29 1.56 16 6 C 0.05 1.39 5.29 -17.82 -0.09 1.30 16 7 N -0.89 -23.61 11.29 55.43 0.63 -22.99 16 8 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.55 -10.52 4.29 -222.11 -0.95 -11.47 16 13 C 0.05 0.81 5.12 -4.52 -0.02 0.79 16 14 C 0.06 0.94 5.19 -3.57 -0.02 0.92 16 15 N -0.73 -10.85 5.31 -59.70 -0.32 -11.17 16 16 C 0.52 9.43 7.09 -11.11 -0.08 9.35 16 17 O -0.57 -11.95 17.93 5.56 0.10 -11.85 16 18 C -0.18 -3.27 4.91 -27.42 -0.13 -3.41 16 19 C 0.12 2.23 2.55 -68.35 -0.17 2.06 16 20 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 21 C -0.15 -2.92 7.60 37.15 0.28 -2.63 16 22 H 0.03 0.74 7.77 -51.93 -0.40 0.34 16 23 H 0.01 0.22 5.32 -51.93 -0.28 -0.05 16 24 H 0.09 2.17 5.95 -51.93 -0.31 1.86 16 25 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 26 H 0.09 1.37 6.28 -51.93 -0.33 1.05 16 27 H 0.06 0.93 8.05 -51.93 -0.42 0.52 16 28 H 0.09 1.47 4.79 -51.93 -0.25 1.22 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.39 5.05 8.92 -40.82 -0.36 4.69 16 31 H 0.09 1.66 7.88 -51.93 -0.41 1.25 16 32 H 0.10 2.00 4.68 -51.93 -0.24 1.75 16 33 H 0.11 2.36 5.04 -51.93 -0.26 2.10 16 34 H 0.03 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.06 1.08 7.50 -51.93 -0.39 0.69 16 LS Contribution 257.24 15.07 3.88 3.88 Total: -1.00 -27.59 257.24 -6.52 -34.11 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -4.58 Total: 6.67 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.25 Total: -2.31 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.64 Total: -45.63 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.10 Total: -11.85 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.59 -6.52 -34.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606269316.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.298 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds