Wall clock time and date at job start Mon Mar 30 2020 04:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.47135 * 2 1 4 4 C 1.50701 * 109.46741 * 240.00426 * 2 1 3 5 5 H 1.08000 * 119.99886 * 239.99510 * 4 2 1 6 6 C 1.37878 * 119.99843 * 60.00150 * 4 2 1 7 7 N 1.31511 * 120.00563 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99603 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47001 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46684 * 120.00082 * 8 6 4 11 11 H 1.48497 * 109.47076 * 239.99927 * 8 6 4 12 12 N 1.46891 * 109.46992 * 120.00246 * 2 1 3 13 13 C 1.45562 * 111.00231 * 326.16041 * 12 2 1 14 14 C 1.53060 * 110.81089 * 300.55623 * 13 12 2 15 15 N 1.47308 * 108.53635 * 274.20773 * 14 13 12 16 16 C 1.33628 * 120.07029 * 70.75627 * 15 14 13 17 17 O 1.21278 * 120.05081 * 179.70034 * 16 15 14 18 18 C 1.51485 * 119.89652 * 359.71224 * 16 15 14 19 19 C 1.45583 * 110.99978 * 195.56562 * 12 2 1 20 20 H 1.09002 * 109.23582 * 179.97438 * 19 12 2 21 21 C 1.52994 * 109.23544 * 299.38765 * 19 12 2 22 22 H 1.08998 * 109.47038 * 185.15800 * 1 2 3 23 23 H 1.09005 * 109.46554 * 305.16019 * 1 2 3 24 24 H 1.09003 * 109.46860 * 65.15309 * 1 2 3 25 25 H 0.96997 * 120.00177 * 180.02562 * 7 6 4 26 26 H 1.08992 * 109.20467 * 60.88668 * 13 12 2 27 27 H 1.09002 * 109.19983 * 180.22854 * 13 12 2 28 28 H 1.08995 * 109.62624 * 33.96843 * 14 13 12 29 29 H 1.09000 * 109.62057 * 154.52959 * 14 13 12 30 30 H 0.97006 * 119.98081 * 250.75261 * 15 14 13 31 31 H 1.09002 * 109.68351 * 170.27901 * 18 16 15 32 32 H 1.08998 * 109.71532 * 49.73809 * 18 16 15 33 33 H 1.09002 * 109.47120 * 60.00159 * 21 19 12 34 34 H 1.09004 * 109.47386 * 179.97438 * 21 19 12 35 35 H 1.08993 * 109.47490 * 299.99668 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2391 -2.4828 7 7 0.9428 0.8299 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 3.1473 -2.2862 -3.6040 10 1 1.1676 -1.5862 -4.8166 11 1 3.1471 -0.1855 -4.8162 12 7 2.0197 -0.6925 1.1993 13 6 1.1294 -0.4712 2.3295 14 6 1.0132 1.0217 2.6460 15 7 2.1234 1.3992 3.5376 16 6 3.3737 1.4438 3.0681 17 8 4.2867 1.7599 3.8011 18 6 3.6487 1.0992 1.6189 19 6 3.4280 -0.4044 1.4298 20 1 3.7606 -0.9309 2.3244 21 6 4.2442 -0.8866 0.2289 22 1 -0.3633 -1.0235 0.0924 23 1 -0.3632 0.5918 0.8402 24 1 -0.3633 0.4318 -0.9326 25 1 0.7081 1.1611 -3.4843 26 1 0.1416 -0.8649 2.0902 27 1 1.5215 -0.9933 3.2023 28 1 1.0725 1.5975 1.7225 29 1 0.0628 1.2177 3.1424 30 1 1.9469 1.6158 4.4666 31 1 4.6792 1.3532 1.3703 32 1 2.9680 1.6542 0.9734 33 1 3.9078 -0.3700 -0.6701 34 1 5.2996 -0.6723 0.3972 35 1 4.1067 -1.9605 0.1037 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606269316.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:23 Heat of formation + Delta-G solvation = -34.917797 kcal Electronic energy + Delta-G solvation = -17112.062573 eV Core-core repulsion = 14530.864785 eV Total energy + Delta-G solvation = -2581.197788 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.65078 -39.22133 -36.10551 -34.87152 -33.61593 -30.60826 -29.20717 -28.28818 -26.69026 -24.39719 -22.99583 -20.93742 -20.03499 -18.59015 -18.29923 -17.52062 -16.74279 -16.29589 -15.94801 -15.83736 -14.97655 -14.64621 -14.03484 -13.87910 -13.60256 -13.42186 -13.06595 -12.90818 -12.77097 -12.48942 -12.28507 -12.17500 -11.99812 -11.92129 -11.62767 -11.17573 -11.01520 -10.61834 -10.33879 -10.30356 -8.65085 -7.98301 -6.00871 1.45175 1.50728 1.54269 1.59080 2.34058 2.50583 3.26685 3.31268 3.53248 4.07391 4.13410 4.21438 4.31886 4.42412 4.47919 4.69014 4.83818 4.93609 5.01925 5.06889 5.13606 5.17218 5.23391 5.35298 5.63080 5.83195 5.86237 5.90734 5.97892 6.15037 6.46306 6.62192 6.92743 7.07394 7.19537 7.61343 9.05634 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.036823 B = 0.009634 C = 0.008610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.208982 B = 2905.589930 C = 3251.107170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.215 3.785 3 H -0.007 1.007 4 C -0.493 4.493 5 H 0.069 0.931 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.940 3.060 9 H -0.268 1.268 10 H -0.289 1.289 11 H -0.289 1.289 12 N -0.557 5.557 13 C 0.047 3.953 14 C 0.070 3.930 15 N -0.709 5.709 16 C 0.521 3.479 17 O -0.599 6.599 18 C -0.174 4.174 19 C 0.123 3.877 20 H 0.066 0.934 21 C -0.148 4.148 22 H 0.033 0.967 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.256 0.744 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.407 0.593 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 -0.928 8.044 8.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.109 3.891 3 H 0.010 0.990 4 C -0.532 4.532 5 H 0.087 0.913 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.768 3.232 9 H -0.192 1.192 10 H -0.215 1.215 11 H -0.215 1.215 12 N -0.280 5.280 13 C -0.082 4.082 14 C -0.055 4.055 15 N -0.361 5.361 16 C 0.309 3.691 17 O -0.481 6.481 18 C -0.216 4.216 19 C 0.013 3.987 20 H 0.084 0.916 21 C -0.206 4.206 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.115 0.885 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.244 0.756 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.878 -1.200 8.000 8.137 hybrid contribution 0.157 0.680 -0.646 0.951 sum -0.721 -0.521 7.354 7.407 Atomic orbital electron populations 1.21966 0.97435 0.99122 1.01080 1.19122 0.92105 0.91382 0.86490 0.98994 1.21714 1.29190 1.11891 0.90384 0.91275 1.25506 0.96023 0.95968 1.01179 1.69981 1.38340 1.24369 1.23409 0.85762 0.77917 0.78868 0.80617 1.19191 1.21503 1.21523 1.60018 1.00931 1.61959 1.05077 1.22394 0.98796 0.93786 0.93208 1.22846 0.90105 0.97849 0.94707 1.45952 1.06685 1.68717 1.14738 1.20836 0.82640 0.75003 0.90617 1.90664 1.45406 1.51064 1.61015 1.22798 1.04631 1.01739 0.92408 1.20935 0.89141 0.90012 0.98576 0.91618 1.22313 0.97279 1.01464 0.99495 0.94766 0.93731 0.92290 0.93446 0.88506 0.90732 0.91535 0.85970 0.75551 0.88776 0.89124 0.89901 0.92977 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 7.61 71.99 0.55 -5.15 16 2 C 0.21 9.30 1.22 44.17 0.05 9.36 16 3 H -0.01 -0.34 4.86 -2.38 -0.01 -0.35 16 4 C -0.49 -24.15 5.89 25.60 0.15 -24.00 16 5 H 0.07 3.41 5.60 -2.91 -0.02 3.39 16 6 C 0.01 0.56 5.29 84.66 0.45 1.01 16 7 N -0.92 -49.20 11.29 21.45 0.24 -48.96 16 8 Si 0.94 41.64 29.54 68.60 2.03 43.67 16 9 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 12 N -0.56 -20.46 4.29 -856.62 -3.68 -24.14 16 13 C 0.05 1.36 5.12 86.58 0.44 1.80 16 14 C 0.07 1.79 5.19 86.24 0.45 2.24 16 15 N -0.71 -19.14 5.31 -461.83 -2.45 -21.59 16 16 C 0.52 17.96 7.09 88.09 0.62 18.59 16 17 O -0.60 -24.41 17.93 -3.02 -0.05 -24.46 16 18 C -0.17 -6.15 4.91 30.15 0.15 -6.00 16 19 C 0.12 4.38 2.55 45.21 0.12 4.49 16 20 H 0.07 2.26 7.87 -2.39 -0.02 2.24 16 21 C -0.15 -5.48 7.60 71.98 0.55 -4.93 16 22 H 0.03 1.38 7.77 -2.39 -0.02 1.36 16 23 H 0.04 1.51 5.32 -2.38 -0.01 1.49 16 24 H 0.06 2.84 5.95 -2.39 -0.01 2.83 16 25 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 26 H 0.10 2.67 6.28 -2.39 -0.02 2.66 16 27 H 0.07 2.00 8.05 -2.39 -0.02 1.98 16 28 H 0.07 2.08 4.79 -2.39 -0.01 2.07 16 29 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.41 9.09 8.92 -92.70 -0.83 8.26 16 31 H 0.09 3.28 7.88 -2.39 -0.02 3.26 16 32 H 0.09 3.48 4.68 -2.39 -0.01 3.47 16 33 H 0.08 3.55 5.04 -2.39 -0.01 3.54 16 34 H 0.05 1.68 8.09 -2.38 -0.02 1.66 16 35 H 0.05 1.94 7.50 -2.39 -0.02 1.92 16 Total: -1.00 -58.49 257.24 -0.10 -58.59 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.29 Total: 19.48 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 3.53 Total: -2.59 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -5.89 Total: -94.69 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -58.49 -0.10 -58.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606269316.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.676 kcal (2) G-P(sol) polarization free energy of solvation -58.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds