Wall clock time and date at job start Mon Mar 30 2020 04:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47261 * 2 1 4 4 C 1.50706 * 109.47125 * 120.00257 * 2 1 3 5 5 H 1.08003 * 119.99748 * 114.94867 * 4 2 1 6 6 C 1.37872 * 119.99771 * 294.93979 * 4 2 1 7 7 N 1.31513 * 120.00312 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99922 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47160 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47284 * 120.00776 * 8 6 4 11 11 H 1.48507 * 109.47143 * 240.00415 * 8 6 4 12 12 N 1.46906 * 109.46983 * 239.99988 * 2 1 3 13 13 C 1.45560 * 111.00078 * 300.38219 * 12 2 1 14 14 C 1.53053 * 110.85290 * 163.63213 * 13 12 2 15 15 N 1.47252 * 108.56342 * 85.72750 * 14 13 12 16 16 C 1.33630 * 120.10866 * 289.31892 * 15 14 13 17 17 O 1.21279 * 120.05212 * 180.24261 * 16 15 14 18 18 C 1.51494 * 119.89454 * 0.25664 * 16 15 14 19 19 C 1.45580 * 110.99665 * 169.79519 * 12 2 1 20 20 H 1.09005 * 109.23647 * 75.83072 * 19 12 2 21 21 C 1.52999 * 109.23665 * 316.44714 * 19 12 2 22 22 H 1.09009 * 109.47233 * 308.11813 * 1 2 3 23 23 H 1.08998 * 109.47534 * 68.11988 * 1 2 3 24 24 H 1.09003 * 109.47636 * 188.12480 * 1 2 3 25 25 H 0.97003 * 120.00553 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.20224 * 43.27736 * 13 12 2 27 27 H 1.08998 * 109.16743 * 283.96565 * 13 12 2 28 28 H 1.09011 * 109.61936 * 326.00726 * 14 13 12 29 29 H 1.08999 * 109.62531 * 205.45863 * 14 13 12 30 30 H 0.97005 * 119.94545 * 109.33261 * 15 14 13 31 31 H 1.08997 * 109.68134 * 310.28328 * 18 16 15 32 32 H 1.08998 * 109.67882 * 189.72374 * 18 16 15 33 33 H 1.08993 * 109.47260 * 306.91194 * 21 19 12 34 34 H 1.09004 * 109.46828 * 66.90931 * 21 19 12 35 35 H 1.08998 * 109.47034 * 186.90817 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5843 -1.6337 1.1334 6 6 1.7874 -0.1818 2.4800 7 7 1.1150 0.9423 2.5982 8 14 2.4106 -1.0620 4.0052 9 1 3.1332 -2.2958 3.6041 10 1 3.3335 -0.1684 4.7501 11 1 1.2610 -1.4214 4.8739 12 7 2.0196 -0.6925 -1.1995 13 6 1.5455 -2.0682 -1.2377 14 6 1.7017 -2.6596 -2.6407 15 7 3.0653 -3.1996 -2.7726 16 6 4.1108 -2.3704 -2.8430 17 8 5.2330 -2.8161 -2.9560 18 6 3.8921 -0.8726 -2.7810 19 6 3.4546 -0.5070 -1.3597 20 1 3.9807 -1.1427 -0.6474 21 6 3.8075 0.9561 -1.0845 22 1 -0.3634 0.6344 0.8086 23 1 -0.3634 0.3830 -0.9536 24 1 -0.3634 -1.0173 0.1452 25 1 0.9423 1.3141 3.4774 26 1 0.4935 -2.0929 -0.9533 27 1 2.1218 -2.6651 -0.5308 28 1 1.5430 -1.8803 -3.3861 29 1 0.9756 -3.4599 -2.7836 30 1 3.2048 -4.1589 -2.8086 31 1 3.1152 -0.5855 -3.4896 32 1 4.8204 -0.3557 -3.0239 33 1 3.1852 1.6026 -1.7031 34 1 3.6313 1.1806 -0.0324 35 1 4.8575 1.1273 -1.3216 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606269317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:26 Heat of formation + Delta-G solvation = -52.911560 kcal Electronic energy + Delta-G solvation = -16860.624112 eV Core-core repulsion = 14278.646056 eV Total energy + Delta-G solvation = -2581.978057 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.26600 -39.07960 -36.22292 -35.00587 -33.45871 -30.90638 -28.98196 -28.08286 -27.09968 -23.84275 -22.93610 -20.89839 -20.59603 -18.36117 -18.05415 -17.55092 -16.91813 -16.53160 -15.94922 -15.44947 -14.92154 -14.64314 -14.41017 -13.76316 -13.57735 -13.28631 -13.02035 -12.99927 -12.94065 -12.63960 -12.45420 -12.25195 -12.11643 -11.86488 -11.62150 -11.56533 -10.95910 -10.79302 -10.42677 -10.05379 -8.88640 -8.04851 -6.23144 1.31742 1.36954 1.44443 1.61429 2.38904 2.44232 3.17166 3.23016 3.61732 4.09288 4.27381 4.30154 4.43681 4.46608 4.54567 4.76637 4.86699 4.91335 5.00109 5.10790 5.19375 5.24476 5.30258 5.34693 5.46770 5.59033 5.78928 5.90137 6.03445 6.22677 6.27583 6.38899 6.82511 6.97927 7.25650 7.47284 8.92140 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.030056 B = 0.009258 C = 0.008927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.358637 B = 3023.846154 C = 3135.729304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.209 3.791 3 H 0.035 0.965 4 C -0.542 4.542 5 H 0.035 0.965 6 C 0.028 3.972 7 N -0.908 5.908 8 Si 0.933 3.067 9 H -0.281 1.281 10 H -0.283 1.283 11 H -0.278 1.278 12 N -0.546 5.546 13 C 0.050 3.950 14 C 0.115 3.885 15 N -0.716 5.716 16 C 0.513 3.487 17 O -0.607 6.607 18 C -0.123 4.123 19 C 0.116 3.884 20 H -0.002 1.002 21 C -0.135 4.135 22 H 0.044 0.956 23 H 0.042 0.958 24 H 0.032 0.968 25 H 0.261 0.739 26 H 0.089 0.911 27 H 0.005 0.995 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.403 0.597 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 -3.641 -10.237 10.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.103 3.897 3 H 0.053 0.947 4 C -0.581 4.581 5 H 0.053 0.947 6 C -0.172 4.172 7 N -0.547 5.547 8 Si 0.761 3.239 9 H -0.207 1.207 10 H -0.209 1.209 11 H -0.204 1.204 12 N -0.270 5.270 13 C -0.079 4.079 14 C -0.008 4.008 15 N -0.366 5.366 16 C 0.301 3.699 17 O -0.490 6.490 18 C -0.163 4.163 19 C 0.007 3.993 20 H 0.016 0.984 21 C -0.193 4.193 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.024 0.976 28 H 0.117 0.883 29 H 0.142 0.858 30 H 0.239 0.761 31 H 0.138 0.862 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.128 -3.335 -10.527 11.100 hybrid contribution 0.779 -1.203 2.233 2.653 sum -0.349 -4.538 -8.294 9.461 Atomic orbital electron populations 1.21624 0.97262 0.99393 0.99104 1.19219 0.92344 0.94036 0.84126 0.94680 1.21889 1.34780 1.08183 0.93261 0.94685 1.25437 0.95364 0.95454 1.00957 1.69995 1.40827 1.19919 1.23951 0.85901 0.78223 0.78677 0.81135 1.20664 1.20887 1.20405 1.60108 1.11163 1.14803 1.40968 1.22177 1.01104 0.88585 0.96061 1.22148 0.81611 1.00611 0.96434 1.46093 1.07795 1.09992 1.72749 1.21132 0.83830 0.91161 0.73779 1.90672 1.25315 1.79907 1.53111 1.22146 1.04966 0.90352 0.98820 1.20758 0.88509 0.96992 0.93054 0.98356 1.21840 1.01142 0.94693 1.01588 0.93721 0.93910 0.94940 0.92960 0.89291 0.97630 0.88345 0.85817 0.76082 0.86180 0.87803 0.91075 0.93938 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 8.48 71.98 0.61 -4.39 16 2 C 0.21 9.55 1.72 44.17 0.08 9.62 16 3 H 0.04 1.77 5.63 -2.39 -0.01 1.76 16 4 C -0.54 -28.19 7.20 25.60 0.18 -28.01 16 5 H 0.03 1.92 6.41 -2.91 -0.02 1.90 16 6 C 0.03 1.50 5.33 84.65 0.45 1.96 16 7 N -0.91 -49.97 11.79 21.45 0.25 -49.72 16 8 Si 0.93 43.44 29.54 68.60 2.03 45.47 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 N -0.55 -20.23 4.04 -856.63 -3.46 -23.69 16 13 C 0.05 1.64 4.63 86.57 0.40 2.04 16 14 C 0.12 2.59 6.51 86.25 0.56 3.15 16 15 N -0.72 -18.85 5.31 -461.93 -2.45 -21.30 16 16 C 0.51 16.90 7.10 88.09 0.63 17.53 16 17 O -0.61 -24.72 17.93 -3.03 -0.05 -24.77 16 18 C -0.12 -3.62 5.05 30.15 0.15 -3.46 16 19 C 0.12 4.25 2.00 45.21 0.09 4.34 16 20 H 0.00 -0.07 7.44 -2.38 -0.02 -0.09 16 21 C -0.14 -4.77 7.98 71.98 0.57 -4.19 16 22 H 0.04 2.17 6.70 -2.38 -0.02 2.16 16 23 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.03 1.34 6.49 -2.39 -0.02 1.32 16 25 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 26 H 0.09 2.91 5.69 -2.39 -0.01 2.90 16 27 H 0.01 0.22 6.89 -2.39 -0.02 0.20 16 28 H 0.10 2.00 7.02 -2.38 -0.02 1.99 16 29 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.40 9.35 8.92 -92.70 -0.83 8.52 16 31 H 0.12 2.94 7.07 -2.39 -0.02 2.93 16 32 H 0.10 2.87 7.77 -2.39 -0.02 2.85 16 33 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 34 H 0.04 1.81 6.41 -2.38 -0.02 1.79 16 35 H 0.07 2.05 7.93 -2.39 -0.02 2.03 16 Total: -1.00 -63.56 269.02 0.31 -63.25 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.27 Total: 12.18 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 3.73 Total: -1.42 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -5.66 Total: -94.71 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.05 Total: -24.77 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -63.56 0.31 -63.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606269317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.339 kcal (2) G-P(sol) polarization free energy of solvation -63.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds