Wall clock time and date at job start Mon Mar 30 2020 04:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47010 * 2 1 4 4 C 1.50696 * 109.47205 * 239.99836 * 2 1 3 5 5 H 1.08002 * 120.00195 * 244.03405 * 4 2 1 6 6 C 1.37878 * 120.00337 * 64.03715 * 4 2 1 7 7 N 1.31514 * 120.00348 * 199.95208 * 6 4 2 8 8 Si 1.86801 * 119.99686 * 19.94303 * 6 4 2 9 9 H 1.48501 * 109.46917 * 94.82177 * 8 6 4 10 10 H 1.48496 * 109.47162 * 214.82235 * 8 6 4 11 11 H 1.48500 * 109.47396 * 334.82225 * 8 6 4 12 12 N 1.46900 * 109.46963 * 119.99881 * 2 1 3 13 13 C 1.45557 * 111.00043 * 153.76610 * 12 2 1 14 14 C 1.53068 * 110.85761 * 59.45400 * 13 12 2 15 15 N 1.47255 * 108.55588 * 85.73809 * 14 13 12 16 16 C 1.33630 * 120.10139 * 289.32689 * 15 14 13 17 17 O 1.21281 * 120.05024 * 180.51818 * 16 15 14 18 18 C 1.51491 * 119.90387 * 0.24914 * 16 15 14 19 19 C 1.45587 * 111.00168 * 284.35142 * 12 2 1 20 20 H 1.08998 * 109.23818 * 179.97438 * 19 12 2 21 21 C 1.53005 * 109.23083 * 60.60839 * 19 12 2 22 22 H 1.09003 * 109.47389 * 320.92354 * 1 2 3 23 23 H 1.09000 * 109.46863 * 80.92262 * 1 2 3 24 24 H 1.09002 * 109.47347 * 200.92309 * 1 2 3 25 25 H 0.96998 * 119.99706 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.20261 * 179.80713 * 13 12 2 27 27 H 1.08995 * 109.20294 * 299.14561 * 13 12 2 28 28 H 1.08992 * 109.62638 * 205.46110 * 14 13 12 29 29 H 1.08999 * 109.62024 * 326.02280 * 14 13 12 30 30 H 0.97000 * 119.94872 * 109.33133 * 15 14 13 31 31 H 1.09000 * 109.68481 * 189.73313 * 18 16 15 32 32 H 1.08995 * 109.67897 * 310.25087 * 18 16 15 33 33 H 1.09004 * 109.46960 * 274.38705 * 21 19 12 34 34 H 1.09003 * 109.47277 * 34.38136 * 21 19 12 35 35 H 1.09000 * 109.47152 * 154.38515 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5985 -1.6250 -1.1326 6 6 1.7694 -0.1929 -2.4810 7 7 1.8445 -0.9664 -3.5419 8 14 1.3061 1.6070 -2.6684 9 1 2.5215 2.4010 -2.9806 10 1 0.3227 1.7528 -3.7715 11 1 0.7057 2.0981 -1.4020 12 7 2.0196 -0.6925 1.1995 13 6 3.3427 -1.2554 0.9732 14 6 4.3456 -0.1594 0.6046 15 7 4.8822 0.4218 1.8467 16 6 4.1044 1.1849 2.6202 17 8 4.5500 1.6708 3.6381 18 6 2.6669 1.4473 2.2206 19 6 1.8759 0.1458 2.3811 20 1 2.2465 -0.3947 3.2521 21 6 0.3965 0.4772 2.5869 22 1 -0.3634 0.7978 0.6478 23 1 -0.3633 0.1621 -1.0148 24 1 -0.3634 -0.9599 0.3670 25 1 1.6591 -0.6024 -4.4217 26 1 3.6784 -1.7581 1.8803 27 1 3.2899 -1.9800 0.1607 28 1 5.1592 -0.5891 0.0202 29 1 3.8443 0.6155 0.0247 30 1 5.8017 0.2504 2.1037 31 1 2.2415 2.2172 2.8643 32 1 2.6287 1.7751 1.1818 33 1 0.1336 1.3512 1.9909 34 1 -0.2128 -0.3713 2.2756 35 1 0.2145 0.6880 3.6408 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606269319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:32 Heat of formation + Delta-G solvation = -6.154604 kcal Electronic energy + Delta-G solvation = -17193.154223 eV Core-core repulsion = 14613.203700 eV Total energy + Delta-G solvation = -2579.950523 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.26020 -37.78334 -34.72451 -33.28793 -31.65939 -30.30037 -27.86623 -26.78556 -24.77325 -22.89269 -21.59318 -19.61194 -18.67785 -17.25985 -16.69626 -16.19178 -15.16833 -14.89593 -14.57013 -13.94861 -13.54728 -13.32963 -12.71413 -12.58551 -12.35782 -12.09964 -11.95957 -11.53286 -11.29717 -10.96233 -10.85727 -10.65846 -10.56574 -10.26744 -10.04414 -9.54982 -9.39638 -9.07617 -8.92756 -8.47207 -7.27529 -6.23466 -4.16456 2.94368 3.17869 3.29278 3.32276 3.66821 4.31040 4.60295 4.83700 5.07205 5.27273 5.47090 5.51322 5.65690 5.77495 5.84462 5.89259 5.96296 6.08160 6.30752 6.46708 6.53612 6.55654 6.64540 6.70656 6.80597 6.93133 7.11489 7.33243 7.51029 7.61257 7.90070 8.10432 8.53271 8.54632 8.86140 9.43369 10.87416 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.011297 C = 0.010305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.143648 B = 2477.951738 C = 2716.507366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.184 3.816 3 H 0.004 0.996 4 C -0.533 4.533 5 H 0.088 0.912 6 C 0.084 3.916 7 N -0.881 5.881 8 Si 0.854 3.146 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.257 1.257 12 N -0.542 5.542 13 C 0.062 3.938 14 C 0.073 3.927 15 N -0.726 5.726 16 C 0.521 3.479 17 O -0.570 6.570 18 C -0.183 4.183 19 C 0.105 3.895 20 H 0.070 0.930 21 C -0.148 4.148 22 H 0.035 0.965 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.264 0.736 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.393 0.607 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 2.103 7.333 7.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.077 3.923 3 H 0.021 0.979 4 C -0.570 4.570 5 H 0.106 0.894 6 C -0.120 4.120 7 N -0.517 5.517 8 Si 0.680 3.320 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.181 1.181 12 N -0.264 5.264 13 C -0.067 4.067 14 C -0.051 4.051 15 N -0.377 5.377 16 C 0.308 3.692 17 O -0.450 6.450 18 C -0.225 4.225 19 C -0.005 4.005 20 H 0.089 0.911 21 C -0.205 4.205 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.228 0.772 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.579 1.980 7.659 7.932 hybrid contribution 0.688 1.591 -0.542 1.816 sum 1.267 3.571 7.116 8.062 Atomic orbital electron populations 1.22565 0.97946 0.99957 0.99757 1.19652 0.92250 0.92610 0.87745 0.97905 1.21178 1.36682 1.10892 0.88231 0.89439 1.24845 0.94232 0.96996 0.95959 1.70011 1.47842 1.34778 0.99112 0.87253 0.78714 0.87378 0.78652 1.20731 1.21180 1.18147 1.60033 1.23891 1.38625 1.03877 1.22204 0.86342 0.96637 1.01495 1.22713 0.98995 0.98799 0.84641 1.46221 1.15017 1.51416 1.25066 1.20692 0.88687 0.77100 0.82716 1.90678 1.76043 1.52003 1.26284 1.22938 0.92489 1.02274 1.04806 1.21167 0.95380 0.89676 0.94295 0.91142 1.22311 0.95380 1.02593 1.00188 0.94606 0.93798 0.92755 0.92576 0.92781 0.87348 0.89699 0.89007 0.77185 0.88854 0.88208 0.91958 0.90408 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 6.86 37.16 0.25 -2.65 16 2 C 0.18 3.82 0.82 -68.87 -0.06 3.76 16 3 H 0.00 0.08 3.33 -51.93 -0.17 -0.09 16 4 C -0.53 -12.92 7.35 -34.44 -0.25 -13.18 16 5 H 0.09 2.26 5.45 -52.49 -0.29 1.97 16 6 C 0.08 2.17 5.10 -17.82 -0.09 2.08 16 7 N -0.88 -24.63 13.96 55.43 0.77 -23.85 16 8 Si 0.85 19.58 25.95 -169.99 -4.41 15.17 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.26 -5.60 5.93 56.52 0.34 -5.27 16 12 N -0.54 -9.95 4.24 -222.11 -0.94 -10.89 16 13 C 0.06 1.07 5.16 -4.51 -0.02 1.04 16 14 C 0.07 1.18 5.93 -3.59 -0.02 1.16 16 15 N -0.73 -11.21 5.31 -59.73 -0.32 -11.52 16 16 C 0.52 9.19 7.10 -11.11 -0.08 9.11 16 17 O -0.57 -11.70 17.93 5.56 0.10 -11.60 16 18 C -0.18 -3.04 4.77 -27.42 -0.13 -3.17 16 19 C 0.10 1.72 2.55 -68.35 -0.17 1.54 16 20 H 0.07 1.15 7.87 -51.93 -0.41 0.74 16 21 C -0.15 -2.17 7.50 37.16 0.28 -1.90 16 22 H 0.04 0.63 4.85 -51.93 -0.25 0.38 16 23 H 0.04 0.95 5.79 -51.93 -0.30 0.65 16 24 H 0.05 1.07 7.48 -51.93 -0.39 0.68 16 25 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.05 0.86 8.05 -51.93 -0.42 0.44 16 27 H 0.11 2.04 5.54 -51.93 -0.29 1.76 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.09 1.70 5.05 -51.93 -0.26 1.44 16 30 H 0.39 5.31 8.92 -40.82 -0.36 4.95 16 31 H 0.09 1.44 7.92 -51.93 -0.41 1.03 16 32 H 0.10 1.76 4.69 -51.93 -0.24 1.52 16 33 H 0.06 0.93 5.92 -51.93 -0.31 0.62 16 34 H 0.08 1.19 6.37 -51.93 -0.33 0.86 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 252.50 15.07 3.81 3.81 Total: -1.00 -28.32 252.50 -5.77 -34.09 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.48 Total: 6.99 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -0.30 Total: -2.19 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.49 Total: -46.27 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.10 Total: -11.60 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.41 Total: 15.17 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.32 -5.77 -34.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606269319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.938 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds