Wall clock time and date at job start Mon Mar 30 2020 04:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47010 * 2 1 4 4 C 1.50696 * 109.47205 * 239.99836 * 2 1 3 5 5 H 1.08002 * 120.00195 * 244.03405 * 4 2 1 6 6 C 1.37878 * 120.00337 * 64.03715 * 4 2 1 7 7 N 1.31514 * 120.00348 * 199.95208 * 6 4 2 8 8 Si 1.86801 * 119.99686 * 19.94303 * 6 4 2 9 9 H 1.48501 * 109.46917 * 94.82177 * 8 6 4 10 10 H 1.48496 * 109.47162 * 214.82235 * 8 6 4 11 11 H 1.48500 * 109.47396 * 334.82225 * 8 6 4 12 12 N 1.46900 * 109.46963 * 119.99881 * 2 1 3 13 13 C 1.45557 * 111.00043 * 153.76610 * 12 2 1 14 14 C 1.53068 * 110.85761 * 59.45400 * 13 12 2 15 15 N 1.47255 * 108.55588 * 85.73809 * 14 13 12 16 16 C 1.33630 * 120.10139 * 289.32689 * 15 14 13 17 17 O 1.21281 * 120.05024 * 180.51818 * 16 15 14 18 18 C 1.51491 * 119.90387 * 0.24914 * 16 15 14 19 19 C 1.45587 * 111.00168 * 284.35142 * 12 2 1 20 20 H 1.08998 * 109.23818 * 179.97438 * 19 12 2 21 21 C 1.53005 * 109.23083 * 60.60839 * 19 12 2 22 22 H 1.09003 * 109.47389 * 320.92354 * 1 2 3 23 23 H 1.09000 * 109.46863 * 80.92262 * 1 2 3 24 24 H 1.09002 * 109.47347 * 200.92309 * 1 2 3 25 25 H 0.96998 * 119.99706 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.20261 * 179.80713 * 13 12 2 27 27 H 1.08995 * 109.20294 * 299.14561 * 13 12 2 28 28 H 1.08992 * 109.62638 * 205.46110 * 14 13 12 29 29 H 1.08999 * 109.62024 * 326.02280 * 14 13 12 30 30 H 0.97000 * 119.94872 * 109.33133 * 15 14 13 31 31 H 1.09000 * 109.68481 * 189.73313 * 18 16 15 32 32 H 1.08995 * 109.67897 * 310.25087 * 18 16 15 33 33 H 1.09004 * 109.46960 * 274.38705 * 21 19 12 34 34 H 1.09003 * 109.47277 * 34.38136 * 21 19 12 35 35 H 1.09000 * 109.47152 * 154.38515 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5985 -1.6250 -1.1326 6 6 1.7694 -0.1929 -2.4810 7 7 1.8445 -0.9664 -3.5419 8 14 1.3061 1.6070 -2.6684 9 1 2.5215 2.4010 -2.9806 10 1 0.3227 1.7528 -3.7715 11 1 0.7057 2.0981 -1.4020 12 7 2.0196 -0.6925 1.1995 13 6 3.3427 -1.2554 0.9732 14 6 4.3456 -0.1594 0.6046 15 7 4.8822 0.4218 1.8467 16 6 4.1044 1.1849 2.6202 17 8 4.5500 1.6708 3.6381 18 6 2.6669 1.4473 2.2206 19 6 1.8759 0.1458 2.3811 20 1 2.2465 -0.3947 3.2521 21 6 0.3965 0.4772 2.5869 22 1 -0.3634 0.7978 0.6478 23 1 -0.3633 0.1621 -1.0148 24 1 -0.3634 -0.9599 0.3670 25 1 1.6591 -0.6024 -4.4217 26 1 3.6784 -1.7581 1.8803 27 1 3.2899 -1.9800 0.1607 28 1 5.1592 -0.5891 0.0202 29 1 3.8443 0.6155 0.0247 30 1 5.8017 0.2504 2.1037 31 1 2.2415 2.2172 2.8643 32 1 2.6287 1.7751 1.1818 33 1 0.1336 1.3512 1.9909 34 1 -0.2128 -0.3713 2.2756 35 1 0.2145 0.6880 3.6408 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606269319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:32 Heat of formation + Delta-G solvation = -27.889384 kcal Electronic energy + Delta-G solvation = -17194.096714 eV Core-core repulsion = 14613.203700 eV Total energy + Delta-G solvation = -2580.893014 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.66798 -39.26483 -36.11185 -35.03026 -33.22239 -31.90899 -29.20091 -28.19557 -26.55456 -24.31426 -23.08480 -21.00140 -20.19996 -18.89403 -18.21677 -17.63476 -16.74531 -16.39116 -16.04084 -15.67802 -14.97860 -14.78948 -14.24125 -14.10692 -13.84118 -13.48693 -13.45281 -13.04339 -12.86185 -12.47654 -12.41079 -12.19578 -12.10575 -11.79278 -11.57231 -11.23384 -10.88283 -10.74809 -10.39254 -10.34287 -8.74565 -8.22237 -6.16233 1.35243 1.43821 1.48959 1.55188 2.36077 2.41011 3.08475 3.21251 3.51009 3.97287 4.13278 4.18985 4.37603 4.40893 4.45694 4.61769 4.66868 4.73392 4.96959 5.01552 5.09384 5.13812 5.23119 5.28287 5.34119 5.44044 5.68040 5.83536 5.87289 6.12057 6.22673 6.50526 6.87853 6.92987 7.19732 7.46559 8.91394 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.011297 C = 0.010305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.143648 B = 2477.951738 C = 2716.507366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.189 3.811 3 H 0.006 0.994 4 C -0.518 4.518 5 H 0.066 0.934 6 C 0.035 3.965 7 N -0.931 5.931 8 Si 0.903 3.097 9 H -0.282 1.282 10 H -0.294 1.294 11 H -0.235 1.235 12 N -0.548 5.548 13 C 0.064 3.936 14 C 0.082 3.918 15 N -0.712 5.712 16 C 0.519 3.481 17 O -0.600 6.600 18 C -0.178 4.178 19 C 0.105 3.895 20 H 0.075 0.925 21 C -0.145 4.145 22 H 0.064 0.936 23 H 0.024 0.976 24 H 0.053 0.947 25 H 0.262 0.738 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.405 0.595 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.580 3.108 8.917 9.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.082 3.918 3 H 0.023 0.977 4 C -0.556 4.556 5 H 0.083 0.917 6 C -0.165 4.165 7 N -0.570 5.570 8 Si 0.728 3.272 9 H -0.208 1.208 10 H -0.221 1.221 11 H -0.158 1.158 12 N -0.271 5.271 13 C -0.065 4.065 14 C -0.043 4.043 15 N -0.363 5.363 16 C 0.306 3.694 17 O -0.482 6.482 18 C -0.220 4.220 19 C -0.004 4.004 20 H 0.093 0.907 21 C -0.202 4.202 22 H 0.083 0.917 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.241 0.759 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.301 2.982 9.263 9.736 hybrid contribution 0.828 1.189 -0.977 1.748 sum 1.129 4.171 8.286 9.345 Atomic orbital electron populations 1.22540 0.97145 1.01121 0.99260 1.19503 0.92756 0.92314 0.87277 0.97679 1.21454 1.34753 1.09871 0.89489 0.91658 1.25472 0.94929 1.00180 0.95893 1.70126 1.50798 1.36509 0.99604 0.86453 0.78231 0.83357 0.79162 1.20780 1.22070 1.15774 1.59993 1.24531 1.38913 1.03635 1.22136 0.86341 0.96560 1.01482 1.22548 0.99310 0.97745 0.84670 1.46093 1.15454 1.50451 1.24320 1.20899 0.89215 0.76886 0.82357 1.90671 1.76664 1.53291 1.27587 1.22911 0.91897 1.02705 1.04469 1.21251 0.96679 0.89290 0.93197 0.90675 1.22277 0.93753 1.02275 1.01902 0.91739 0.95689 0.92822 0.92875 0.91184 0.89428 0.87919 0.91069 0.75864 0.87426 0.89041 0.91905 0.90927 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 6.86 71.98 0.49 -4.95 16 2 C 0.19 7.52 0.82 44.17 0.04 7.55 16 3 H 0.01 0.24 3.33 -2.39 -0.01 0.23 16 4 C -0.52 -25.07 7.35 25.60 0.19 -24.88 16 5 H 0.07 3.42 5.45 -2.91 -0.02 3.41 16 6 C 0.03 1.79 5.10 84.65 0.43 2.23 16 7 N -0.93 -53.16 13.96 21.45 0.30 -52.86 16 8 Si 0.90 39.92 25.95 68.60 1.78 41.70 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 11 H -0.24 -9.42 5.93 99.48 0.59 -8.83 16 12 N -0.55 -19.08 4.24 -856.61 -3.64 -22.72 16 13 C 0.06 2.10 5.16 86.58 0.45 2.54 16 14 C 0.08 2.52 5.93 86.26 0.51 3.03 16 15 N -0.71 -20.43 5.31 -461.92 -2.45 -22.88 16 16 C 0.52 17.10 7.10 88.09 0.63 17.72 16 17 O -0.60 -23.37 17.93 -3.03 -0.05 -23.42 16 18 C -0.18 -5.40 4.77 30.15 0.14 -5.26 16 19 C 0.11 3.14 2.55 45.21 0.12 3.26 16 20 H 0.08 2.22 7.87 -2.39 -0.02 2.20 16 21 C -0.15 -3.75 7.50 71.98 0.54 -3.21 16 22 H 0.06 2.08 4.85 -2.39 -0.01 2.07 16 23 H 0.02 1.02 5.79 -2.39 -0.01 1.01 16 24 H 0.05 2.02 7.48 -2.39 -0.02 2.00 16 25 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 26 H 0.07 2.09 8.05 -2.39 -0.02 2.07 16 27 H 0.09 3.29 5.54 -2.39 -0.01 3.28 16 28 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.07 2.54 5.05 -2.39 -0.01 2.52 16 30 H 0.40 9.99 8.92 -92.71 -0.83 9.16 16 31 H 0.11 2.97 7.92 -2.39 -0.02 2.95 16 32 H 0.09 2.98 4.69 -2.39 -0.01 2.97 16 33 H 0.06 1.62 5.92 -2.38 -0.01 1.60 16 34 H 0.07 1.98 6.37 -2.39 -0.02 1.97 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -59.68 252.50 -0.35 -60.03 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.18 Total: 22.10 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 3.53 Total: -1.96 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -5.79 Total: -98.45 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.78 Total: 41.70 kcal Total: -59.68 -0.35 -60.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606269319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.144 kcal (2) G-P(sol) polarization free energy of solvation -59.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds