Wall clock time and date at job start Mon Mar 30 2020 03:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 115.55857 * 2 1 4 4 C 1.52993 * 117.49800 * 145.68919 * 2 1 3 5 5 C 1.53000 * 117.50047 * 214.31412 * 2 1 3 6 6 H 1.09003 * 117.51580 * 359.97438 * 5 2 1 7 7 C 1.52997 * 117.50349 * 145.02257 * 5 2 1 8 8 N 1.46499 * 109.47555 * 185.01408 * 7 5 2 9 9 C 1.34777 * 120.00199 * 180.02562 * 8 7 5 10 10 O 1.21583 * 119.99943 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99549 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99486 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47198 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.47208 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99770 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00083 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00147 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00278 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47228 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.46793 * 300.00001 * 18 16 14 21 21 H 1.48500 * 109.47000 * 60.00094 * 18 16 14 22 22 H 1.08999 * 109.47145 * 205.68860 * 1 2 3 23 23 H 1.09000 * 109.47227 * 325.69417 * 1 2 3 24 24 H 1.09001 * 109.46982 * 85.68610 * 1 2 3 25 25 H 1.09001 * 117.50286 * 0.02562 * 4 2 1 26 26 H 1.09003 * 117.51695 * 214.97113 * 4 2 1 27 27 H 1.08999 * 109.46950 * 65.00653 * 7 5 2 28 28 H 1.09005 * 109.46371 * 305.01090 * 7 5 2 29 29 H 0.97000 * 119.99478 * 359.97438 * 8 7 5 30 30 H 0.96991 * 120.00732 * 359.97438 * 11 9 8 31 31 H 1.09000 * 109.47602 * 59.99571 * 12 11 9 32 32 H 1.08998 * 109.47492 * 299.99559 * 12 11 9 33 33 H 1.08994 * 109.47074 * 60.00190 * 13 12 11 34 34 H 1.08998 * 109.47285 * 300.00026 * 13 12 11 35 35 H 0.97005 * 119.99661 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1209 0.7650 5 6 2.2365 -1.1209 -0.7650 6 1 1.6115 -1.8588 -1.2681 7 6 3.5490 -0.7759 -1.4714 8 7 4.0084 -1.9344 -2.2416 9 6 5.1526 -1.8619 -2.9500 10 8 5.8034 -0.8349 -2.9504 11 7 5.5749 -2.9276 -3.6589 12 6 6.8183 -2.8486 -4.4294 13 6 7.0666 -4.1832 -5.1353 14 6 8.3454 -4.1018 -5.9284 15 1 8.9235 -3.1895 -5.9287 16 6 8.7774 -5.1919 -6.6537 17 7 8.0732 -6.3026 -6.6538 18 14 10.3629 -5.0912 -7.6363 19 1 10.6038 -6.3865 -8.3214 20 1 10.2508 -4.0092 -8.6472 21 1 11.4948 -4.7981 -6.7208 22 1 -0.3633 -0.9261 0.4455 23 1 -0.3634 0.8489 0.5792 24 1 -0.3633 0.0773 -1.0248 25 1 1.6112 -1.8587 1.2679 26 1 3.1716 -0.8755 1.2683 27 1 4.3022 -0.5110 -0.7294 28 1 3.3890 0.0670 -2.1438 29 1 3.4894 -2.7539 -2.2410 30 1 5.0556 -3.7468 -3.6589 31 1 7.6492 -2.6333 -3.7575 32 1 6.7361 -2.0546 -5.1716 33 1 6.2359 -4.3989 -5.8072 34 1 7.1490 -4.9771 -4.3929 35 1 7.2500 -6.3550 -6.1433 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612100668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:21 Heat of formation + Delta-G solvation = -32.008852 kcal Electronic energy + Delta-G solvation = -14843.585881 eV Core-core repulsion = 12262.514234 eV Total energy + Delta-G solvation = -2581.071647 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.69515 -38.24390 -35.11257 -34.10856 -33.01147 -29.82126 -28.84573 -26.31886 -24.02251 -21.62927 -21.26339 -20.98701 -20.32093 -18.06756 -16.57318 -16.36418 -15.47869 -15.07192 -14.64116 -14.05957 -13.81871 -13.67238 -13.62001 -13.42247 -12.83251 -12.50207 -12.17407 -11.72835 -11.62216 -11.55978 -10.95650 -10.44009 -10.36883 -10.25367 -10.16583 -9.95716 -9.80664 -9.00748 -8.68290 -8.43615 -8.28664 -6.42675 -4.12235 2.95837 3.43780 3.45467 3.46194 3.58162 3.64797 4.30511 4.48470 4.52092 4.56603 4.74899 4.94674 5.04314 5.29567 5.35694 5.43794 5.49962 5.59413 5.65074 5.71291 5.89666 5.99815 6.17702 6.29271 6.59701 6.66797 6.90772 7.14235 7.38441 7.38468 8.10144 8.37683 8.40066 8.81499 8.95676 9.59645 10.98528 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.084662 B = 0.003607 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.647448 B = 7761.882788 C = 7936.837016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.146 4.146 3 H 0.107 0.893 4 C -0.173 4.173 5 C -0.165 4.165 6 H 0.109 0.891 7 C 0.171 3.829 8 N -0.751 5.751 9 C 0.698 3.302 10 O -0.598 6.598 11 N -0.741 5.741 12 C 0.147 3.853 13 C 0.000 4.000 14 C -0.602 4.602 15 H 0.053 0.947 16 C 0.017 3.983 17 N -0.911 5.911 18 Si 1.072 2.928 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.287 1.287 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.394 0.606 30 H 0.392 0.608 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.013 0.987 34 H 0.013 0.987 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.597 8.285 12.787 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.165 4.165 3 H 0.125 0.875 4 C -0.210 4.210 5 C -0.183 4.183 6 H 0.128 0.872 7 C 0.047 3.953 8 N -0.408 5.408 9 C 0.398 3.602 10 O -0.477 6.477 11 N -0.395 5.395 12 C 0.024 3.976 13 C -0.038 4.038 14 C -0.640 4.640 15 H 0.072 0.928 16 C -0.187 4.187 17 N -0.547 5.547 18 Si 0.899 3.101 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.213 1.213 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.228 0.772 30 H 0.225 0.775 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.031 0.969 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.953 8.386 11.766 19.405 hybrid contribution -1.551 0.075 1.067 1.884 sum -14.503 8.462 12.833 21.134 Atomic orbital electron populations 1.21372 0.92638 1.01983 1.02020 1.22385 0.95345 0.94742 1.04018 0.87506 1.23264 1.02761 1.01291 0.93655 1.22584 0.98651 1.02794 0.94301 0.87249 1.20633 0.92659 0.87974 0.94044 1.45099 1.25589 1.16883 1.53221 1.16049 0.80907 0.84315 0.78939 1.90889 1.57654 1.30362 1.68808 1.45526 1.27965 1.14250 1.51714 1.21422 0.82485 1.00478 0.93169 1.19453 0.97834 0.91300 0.95166 1.21895 1.08088 1.01790 1.32249 0.92832 1.25891 1.03557 0.92322 0.96945 1.70805 1.15840 1.27469 1.40583 0.83503 0.74554 0.75940 0.76077 1.20746 1.21302 1.21309 0.92527 0.92037 0.92067 0.88677 0.88515 0.91710 0.91478 0.77239 0.77526 0.92622 0.92610 0.96882 0.96881 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.19 37.16 0.38 -0.40 16 2 C -0.15 -1.10 6.13 -90.62 -0.56 -1.66 16 3 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.17 -1.33 9.82 -26.73 -0.26 -1.59 16 5 C -0.16 -1.41 5.57 -90.62 -0.50 -1.91 16 6 H 0.11 0.86 8.04 -51.93 -0.42 0.44 16 7 C 0.17 2.00 5.96 -4.04 -0.02 1.98 16 8 N -0.75 -9.91 5.56 -65.23 -0.36 -10.28 16 9 C 0.70 12.72 8.57 -86.92 -0.74 11.98 16 10 O -0.60 -13.40 16.34 5.29 0.09 -13.31 16 11 N -0.74 -13.52 5.56 -65.23 -0.36 -13.88 16 12 C 0.15 3.28 5.61 -4.04 -0.02 3.26 16 13 C 0.00 0.00 4.40 -27.88 -0.12 -0.12 16 14 C -0.60 -17.19 9.11 -34.44 -0.31 -17.50 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 17 N -0.91 -27.60 13.65 55.43 0.76 -26.84 16 18 Si 1.07 25.29 29.90 -169.99 -5.08 20.21 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 22 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 0.64 8.05 -51.93 -0.42 0.22 16 26 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 27 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.39 4.05 8.41 -40.82 -0.34 3.71 16 30 H 0.39 6.06 8.49 -40.82 -0.35 5.71 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.01 0.33 8.01 -51.93 -0.42 -0.08 16 34 H 0.01 0.33 8.01 -51.93 -0.42 -0.08 16 35 H 0.27 7.99 7.22 -40.82 -0.29 7.70 16 LS Contribution 299.77 15.07 4.52 4.52 Total: -1.00 -33.35 299.77 -8.34 -41.69 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.63 Total: 3.47 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.27 Total: -5.58 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.03 Total: -51.00 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.21 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.35 -8.34 -41.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612100668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.686 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds