Wall clock time and date at job start Mon Mar 30 2020 03:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47238 * 2 1 4 4 N 1.46499 * 109.47649 * 119.99985 * 2 1 3 5 5 C 1.36929 * 120.00134 * 307.36726 * 4 2 1 6 6 H 1.07998 * 120.00342 * 121.27862 * 5 4 2 7 7 C 1.38815 * 119.99766 * 301.28026 * 5 4 2 8 8 N 1.31615 * 119.99991 * 134.78472 * 7 5 4 9 9 Si 1.86796 * 119.99691 * 314.77934 * 7 5 4 10 10 H 1.48499 * 109.47273 * 96.15659 * 9 7 5 11 11 H 1.48511 * 109.47144 * 216.15371 * 9 7 5 12 12 H 1.48499 * 109.47534 * 336.15395 * 9 7 5 13 13 C 1.46498 * 119.99695 * 127.35765 * 4 2 1 14 14 H 1.09001 * 109.40663 * 0.17865 * 13 4 2 15 15 C 1.53070 * 109.39903 * 120.00734 * 13 4 2 16 16 C 1.53343 * 108.43006 * 169.02696 * 15 13 4 17 17 C 1.52922 * 108.67264 * 292.47257 * 16 15 13 18 18 N 1.45748 * 110.32310 * 50.85330 * 17 16 15 19 19 C 1.33088 * 124.31072 * 340.59444 * 18 17 16 20 20 O 1.21281 * 118.33058 * 182.40637 * 19 18 17 21 21 H 1.09001 * 109.47003 * 305.05951 * 1 2 3 22 22 H 1.08993 * 109.47266 * 65.06025 * 1 2 3 23 23 H 1.09000 * 109.47048 * 185.06150 * 1 2 3 24 24 H 1.09001 * 109.47194 * 240.00614 * 2 1 3 25 25 H 1.09004 * 109.47348 * 187.29787 * 3 2 1 26 26 H 1.09000 * 109.47256 * 307.30224 * 3 2 1 27 27 H 1.09004 * 109.47104 * 67.29995 * 3 2 1 28 28 H 0.97008 * 119.99975 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.67314 * 49.29495 * 15 13 4 30 30 H 1.08998 * 109.67342 * 288.75876 * 15 13 4 31 31 H 1.08992 * 109.60912 * 172.71237 * 16 15 13 32 32 H 1.09002 * 109.60359 * 52.22128 * 16 15 13 33 33 H 1.09009 * 109.30085 * 171.06505 * 17 16 15 34 34 H 1.09004 * 109.29656 * 290.63923 * 17 16 15 35 35 H 0.97002 * 117.94839 * 160.82323 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5682 -0.3171 2.4342 6 1 1.0709 -1.0366 3.0676 7 6 1.7510 0.9864 2.8750 8 7 0.7596 1.6307 3.4531 9 14 3.4042 1.8259 2.6479 10 1 3.3755 2.6497 1.4128 11 1 3.6816 2.6975 3.8179 12 1 4.4697 0.7980 2.5328 13 6 2.9885 -1.7809 1.0676 14 1 3.2278 -1.9304 0.0148 15 6 4.2640 -1.4193 1.8326 16 6 5.1483 -2.6691 1.9187 17 6 4.4572 -3.6971 2.8154 18 7 3.0789 -3.8979 2.3861 19 6 2.3975 -3.0430 1.6272 20 8 1.2398 -3.2976 1.3705 21 1 -0.3633 0.5903 0.8412 22 1 -0.3633 0.4333 -0.9318 23 1 -0.3633 -1.0237 0.0907 24 1 1.8933 -0.5137 -0.8900 25 1 3.1222 1.4453 -0.1305 26 1 1.5740 1.9927 -0.8175 27 1 1.7872 1.9173 0.9481 28 1 0.8875 2.5415 3.7616 29 1 4.0066 -1.0822 2.8367 30 1 4.7969 -0.6285 1.3047 31 1 6.1159 -2.4040 2.3448 32 1 5.2874 -3.0881 0.9221 33 1 4.9940 -4.6441 2.7580 34 1 4.4656 -3.3403 3.8453 35 1 2.6260 -4.7058 2.6745 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687715795.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:57 Heat of formation + Delta-G solvation = -3.981355 kcal Electronic energy + Delta-G solvation = -17188.709830 eV Core-core repulsion = 14608.853547 eV Total energy + Delta-G solvation = -2579.856284 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.59188 -36.39488 -35.67662 -32.39851 -31.92288 -30.08742 -27.52213 -26.17539 -24.69642 -22.63062 -21.98046 -19.48988 -18.51834 -16.83518 -16.57651 -15.42351 -15.22754 -14.41290 -14.04994 -13.80014 -13.39189 -13.03217 -12.96454 -12.59349 -12.33704 -11.94376 -11.62660 -11.21910 -11.12460 -11.02592 -10.73795 -10.37682 -10.31359 -10.03771 -9.96201 -9.44658 -9.14729 -8.88192 -8.47185 -8.12897 -6.40837 -6.15400 -3.54406 3.37037 3.50991 3.53375 3.56230 3.95320 4.54116 4.87793 5.05493 5.15358 5.36006 5.43718 5.56295 5.81931 5.97702 6.02010 6.09163 6.16405 6.28110 6.38984 6.42667 6.59556 6.63333 6.79351 6.90800 7.04295 7.10756 7.39250 7.42374 7.61668 7.97621 8.01888 8.69305 9.09185 9.11255 9.68074 10.30381 10.91345 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.013629 C = 0.011392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.934371 B = 2053.971418 C = 2457.358293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.177 3.823 3 C -0.176 4.176 4 N -0.566 5.566 5 C -0.301 4.301 6 H 0.058 0.942 7 C 0.087 3.913 8 N -0.843 5.843 9 Si 0.815 3.185 10 H -0.273 1.273 11 H -0.308 1.308 12 H -0.249 1.249 13 C 0.158 3.842 14 H 0.076 0.924 15 C -0.133 4.133 16 C -0.136 4.136 17 C 0.119 3.881 18 N -0.731 5.731 19 C 0.513 3.487 20 O -0.547 6.547 21 H 0.070 0.930 22 H 0.028 0.972 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.264 0.736 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.026 -6.086 -3.830 11.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.072 3.928 3 C -0.235 4.235 4 N -0.288 5.288 5 C -0.429 4.429 6 H 0.076 0.924 7 C -0.120 4.120 8 N -0.477 5.477 9 Si 0.640 3.360 10 H -0.199 1.199 11 H -0.236 1.236 12 H -0.173 1.173 13 C 0.048 3.952 14 H 0.094 0.906 15 C -0.172 4.172 16 C -0.174 4.174 17 C -0.006 4.006 18 N -0.385 5.385 19 C 0.298 3.702 20 O -0.423 6.423 21 H 0.089 0.911 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 8.384 -5.834 -3.981 10.963 hybrid contribution 0.911 0.334 0.330 1.024 sum 9.295 -5.500 -3.651 11.401 Atomic orbital electron populations 1.21965 0.96701 1.01727 0.99865 1.20452 0.93413 0.91142 0.87834 1.22888 0.99106 0.99041 1.02433 1.43807 1.46227 1.35754 1.02975 1.18058 1.35483 0.95248 0.94076 0.92445 1.25899 0.95999 0.96302 0.93801 1.70361 1.29557 1.10456 1.37296 0.88337 0.90993 0.80140 0.76519 1.19909 1.23632 1.17300 1.20430 0.89808 0.87806 0.97154 0.90582 1.22418 0.95321 0.95879 1.03617 1.21908 0.99176 0.96622 0.99718 1.21221 0.82239 0.98847 0.98323 1.45614 1.14290 1.24455 1.54091 1.21452 0.86474 0.85017 0.77208 1.90643 1.17342 1.75107 1.59227 0.91057 0.95306 0.93136 0.93942 0.94374 0.94190 0.90173 0.92648 0.89541 0.91729 0.90780 0.91783 0.91776 0.92307 0.78124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.94 37.16 0.33 -2.91 16 2 C 0.18 3.93 3.36 -67.93 -0.23 3.70 16 3 C -0.18 -3.82 7.06 37.16 0.26 -3.56 16 4 N -0.57 -13.50 1.59 -159.70 -0.25 -13.75 16 5 C -0.30 -8.24 6.84 -15.06 -0.10 -8.35 16 6 H 0.06 1.83 7.97 -52.49 -0.42 1.41 16 7 C 0.09 2.38 3.92 -17.43 -0.07 2.31 16 8 N -0.84 -24.36 13.97 55.49 0.78 -23.59 16 9 Si 0.82 19.62 23.87 -169.99 -4.06 15.56 16 10 H -0.27 -6.46 5.37 56.52 0.30 -6.15 16 11 H -0.31 -7.78 7.11 56.52 0.40 -7.38 16 12 H -0.25 -5.55 4.20 56.52 0.24 -5.31 16 13 C 0.16 3.25 2.85 -69.30 -0.20 3.05 16 14 H 0.08 1.43 7.56 -51.93 -0.39 1.04 16 15 C -0.13 -2.42 3.70 -26.52 -0.10 -2.52 16 16 C -0.14 -1.82 6.02 -26.59 -0.16 -1.98 16 17 C 0.12 1.54 7.18 -4.49 -0.03 1.50 16 18 N -0.73 -12.10 5.43 -61.45 -0.33 -12.44 16 19 C 0.51 10.81 6.79 -11.99 -0.08 10.73 16 20 O -0.55 -13.80 17.48 5.56 0.10 -13.70 16 21 H 0.07 1.82 7.70 -51.93 -0.40 1.42 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.04 0.85 7.57 -51.93 -0.39 0.46 16 25 H 0.04 0.79 6.93 -51.93 -0.36 0.43 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.97 3.57 -51.93 -0.19 1.78 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.09 1.81 6.01 -51.93 -0.31 1.50 16 30 H 0.06 1.17 7.09 -51.93 -0.37 0.81 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 33 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.38 5.80 8.79 -40.82 -0.36 5.44 16 LS Contribution 264.17 15.07 3.98 3.98 Total: -1.00 -31.38 264.17 -5.71 -37.09 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.54 Total: 4.86 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.37 Total: 1.98 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.19 Total: -49.78 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.10 Total: -13.70 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.06 Total: 15.56 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.38 -5.71 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687715795.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.110 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds