Wall clock time and date at job start Mon Mar 30 2020 03:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47238 * 2 1 4 4 N 1.46499 * 109.47649 * 119.99985 * 2 1 3 5 5 C 1.36929 * 120.00134 * 307.36726 * 4 2 1 6 6 H 1.07998 * 120.00342 * 121.27862 * 5 4 2 7 7 C 1.38815 * 119.99766 * 301.28026 * 5 4 2 8 8 N 1.31615 * 119.99991 * 134.78472 * 7 5 4 9 9 Si 1.86796 * 119.99691 * 314.77934 * 7 5 4 10 10 H 1.48499 * 109.47273 * 96.15659 * 9 7 5 11 11 H 1.48511 * 109.47144 * 216.15371 * 9 7 5 12 12 H 1.48499 * 109.47534 * 336.15395 * 9 7 5 13 13 C 1.46498 * 119.99695 * 127.35765 * 4 2 1 14 14 H 1.09001 * 109.40663 * 0.17865 * 13 4 2 15 15 C 1.53070 * 109.39903 * 120.00734 * 13 4 2 16 16 C 1.53343 * 108.43006 * 169.02696 * 15 13 4 17 17 C 1.52922 * 108.67264 * 292.47257 * 16 15 13 18 18 N 1.45748 * 110.32310 * 50.85330 * 17 16 15 19 19 C 1.33088 * 124.31072 * 340.59444 * 18 17 16 20 20 O 1.21281 * 118.33058 * 182.40637 * 19 18 17 21 21 H 1.09001 * 109.47003 * 305.05951 * 1 2 3 22 22 H 1.08993 * 109.47266 * 65.06025 * 1 2 3 23 23 H 1.09000 * 109.47048 * 185.06150 * 1 2 3 24 24 H 1.09001 * 109.47194 * 240.00614 * 2 1 3 25 25 H 1.09004 * 109.47348 * 187.29787 * 3 2 1 26 26 H 1.09000 * 109.47256 * 307.30224 * 3 2 1 27 27 H 1.09004 * 109.47104 * 67.29995 * 3 2 1 28 28 H 0.97008 * 119.99975 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.67314 * 49.29495 * 15 13 4 30 30 H 1.08998 * 109.67342 * 288.75876 * 15 13 4 31 31 H 1.08992 * 109.60912 * 172.71237 * 16 15 13 32 32 H 1.09002 * 109.60359 * 52.22128 * 16 15 13 33 33 H 1.09009 * 109.30085 * 171.06505 * 17 16 15 34 34 H 1.09004 * 109.29656 * 290.63923 * 17 16 15 35 35 H 0.97002 * 117.94839 * 160.82323 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5682 -0.3171 2.4342 6 1 1.0709 -1.0366 3.0676 7 6 1.7510 0.9864 2.8750 8 7 0.7596 1.6307 3.4531 9 14 3.4042 1.8259 2.6479 10 1 3.3755 2.6497 1.4128 11 1 3.6816 2.6975 3.8179 12 1 4.4697 0.7980 2.5328 13 6 2.9885 -1.7809 1.0676 14 1 3.2278 -1.9304 0.0148 15 6 4.2640 -1.4193 1.8326 16 6 5.1483 -2.6691 1.9187 17 6 4.4572 -3.6971 2.8154 18 7 3.0789 -3.8979 2.3861 19 6 2.3975 -3.0430 1.6272 20 8 1.2398 -3.2976 1.3705 21 1 -0.3633 0.5903 0.8412 22 1 -0.3633 0.4333 -0.9318 23 1 -0.3633 -1.0237 0.0907 24 1 1.8933 -0.5137 -0.8900 25 1 3.1222 1.4453 -0.1305 26 1 1.5740 1.9927 -0.8175 27 1 1.7872 1.9173 0.9481 28 1 0.8875 2.5415 3.7616 29 1 4.0066 -1.0822 2.8367 30 1 4.7969 -0.6285 1.3047 31 1 6.1159 -2.4040 2.3448 32 1 5.2874 -3.0881 0.9221 33 1 4.9940 -4.6441 2.7580 34 1 4.4656 -3.3403 3.8453 35 1 2.6260 -4.7058 2.6745 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687715795.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:56 Heat of formation + Delta-G solvation = -27.921597 kcal Electronic energy + Delta-G solvation = -17189.747957 eV Core-core repulsion = 14608.853547 eV Total energy + Delta-G solvation = -2580.894410 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.13750 -38.18581 -37.14302 -34.09046 -33.83210 -31.62343 -29.14073 -27.97327 -26.45517 -24.24669 -23.32749 -21.35385 -19.96897 -18.67286 -18.13597 -17.08494 -16.74496 -16.25490 -15.63314 -15.47705 -14.92279 -14.76546 -14.39749 -14.21789 -14.02684 -13.76399 -13.42952 -12.90795 -12.72858 -12.53270 -12.25410 -12.16988 -11.94818 -11.72756 -11.62207 -11.23076 -10.93492 -10.55284 -10.19437 -9.85621 -8.40682 -8.15736 -5.65179 1.44326 1.56535 1.64821 1.88620 2.51973 2.61426 2.89821 3.44371 3.97915 4.07871 4.16800 4.28626 4.32309 4.49135 4.57483 4.71060 4.73494 4.89531 4.91117 5.04260 5.07511 5.13840 5.20406 5.23040 5.26559 5.59624 5.61306 5.71078 5.92100 6.09483 6.46497 6.56148 7.20892 7.52672 7.65893 8.28767 8.86162 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.013629 C = 0.011392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.934371 B = 2053.971418 C = 2457.358293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.166 3.834 3 C -0.171 4.171 4 N -0.575 5.575 5 C -0.294 4.294 6 H -0.010 1.010 7 C 0.048 3.952 8 N -0.895 5.895 9 Si 0.886 3.114 10 H -0.259 1.259 11 H -0.325 1.325 12 H -0.217 1.217 13 C 0.151 3.849 14 H 0.100 0.900 15 C -0.130 4.130 16 C -0.127 4.127 17 C 0.110 3.890 18 N -0.720 5.720 19 C 0.504 3.496 20 O -0.605 6.605 21 H 0.029 0.971 22 H 0.064 0.936 23 H 0.026 0.974 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.626 -6.523 -5.450 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.061 3.939 3 C -0.230 4.230 4 N -0.297 5.297 5 C -0.423 4.423 6 H 0.008 0.992 7 C -0.156 4.156 8 N -0.531 5.531 9 Si 0.711 3.289 10 H -0.184 1.184 11 H -0.254 1.254 12 H -0.140 1.140 13 C 0.042 3.958 14 H 0.118 0.882 15 C -0.169 4.169 16 C -0.165 4.165 17 C -0.013 4.013 18 N -0.372 5.372 19 C 0.290 3.710 20 O -0.486 6.486 21 H 0.048 0.952 22 H 0.083 0.917 23 H 0.045 0.955 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 12.063 -6.309 -5.599 14.720 hybrid contribution -0.314 0.374 0.852 0.982 sum 11.749 -5.935 -4.747 13.993 Atomic orbital electron populations 1.21860 0.97838 0.99626 0.99921 1.20681 0.92677 0.92132 0.88402 1.22784 1.00238 0.98264 1.01675 1.43837 1.47317 1.36596 1.01962 1.17474 1.35433 0.94229 0.95119 0.99213 1.26361 0.98704 0.96844 0.93734 1.70451 1.31643 1.11045 1.39962 0.87256 0.86166 0.79451 0.76076 1.18444 1.25434 1.13978 1.20682 0.90011 0.86096 0.99056 0.88235 1.22294 0.94834 0.98608 1.01156 1.21919 0.99303 0.94052 1.01264 1.21597 0.80207 1.01368 0.98172 1.45591 1.15800 1.23606 1.52182 1.21662 0.85989 0.85665 0.77652 1.90615 1.19778 1.76407 1.61804 0.95152 0.91725 0.95479 0.90829 0.92827 0.91643 0.93368 0.92643 0.92749 0.91000 0.87576 0.89743 0.87183 0.92300 0.77353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.12 8.94 71.98 0.64 -5.48 16 2 C 0.17 7.15 3.36 44.99 0.15 7.31 16 3 C -0.17 -6.99 7.06 71.98 0.51 -6.48 16 4 N -0.58 -27.40 1.59 -659.18 -1.05 -28.45 16 5 C -0.29 -16.76 6.84 84.04 0.58 -16.18 16 6 H -0.01 -0.66 7.97 -2.91 -0.02 -0.68 16 7 C 0.05 2.67 3.92 84.86 0.33 3.00 16 8 N -0.89 -54.21 13.97 21.65 0.30 -53.91 16 9 Si 0.89 40.82 23.87 68.60 1.64 42.46 16 10 H -0.26 -11.32 5.37 99.48 0.53 -10.78 16 11 H -0.32 -15.81 7.11 99.48 0.71 -15.10 16 12 H -0.22 -8.81 4.20 99.48 0.42 -8.39 16 13 C 0.15 5.96 2.85 44.11 0.13 6.08 16 14 H 0.10 3.42 7.56 -2.39 -0.02 3.41 16 15 C -0.13 -4.30 3.70 30.73 0.11 -4.19 16 16 C -0.13 -2.77 6.02 30.68 0.18 -2.59 16 17 C 0.11 2.41 7.18 86.50 0.62 3.04 16 18 N -0.72 -22.74 5.43 -467.66 -2.54 -25.28 16 19 C 0.50 21.16 6.79 87.76 0.60 21.76 16 20 O -0.61 -31.57 17.48 -3.03 -0.05 -31.62 16 21 H 0.03 1.59 7.70 -2.39 -0.02 1.57 16 22 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.07 2.73 7.57 -2.39 -0.02 2.71 16 25 H 0.05 2.00 6.93 -2.38 -0.02 1.98 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.05 2.30 3.57 -2.39 -0.01 2.29 16 28 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 29 H 0.05 2.17 6.01 -2.39 -0.01 2.16 16 30 H 0.07 2.28 7.09 -2.39 -0.02 2.26 16 31 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.57 8.12 -2.39 -0.02 1.55 16 33 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.39 11.39 8.79 -92.71 -0.82 10.58 16 Total: -1.00 -74.10 264.17 1.95 -72.15 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -0.20 Total: 18.37 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 3.85 Total: 6.27 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -3.29 Total: -107.63 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.05 Total: -31.62 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.64 Total: 42.46 kcal Total: -74.10 1.95 -72.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687715795.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.227 kcal (2) G-P(sol) polarization free energy of solvation -74.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds