Wall clock time and date at job start Mon Mar 30 2020 03:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47494 * 2 1 4 4 N 1.46501 * 109.47482 * 180.02562 * 3 2 1 5 5 C 1.37192 * 119.99731 * 263.64147 * 4 3 2 6 6 H 1.07994 * 119.99835 * 190.61700 * 5 4 3 7 7 C 1.38876 * 120.00048 * 10.61303 * 5 4 3 8 8 N 1.31473 * 120.00218 * 24.48906 * 7 5 4 9 9 Si 1.86798 * 119.99781 * 204.48638 * 7 5 4 10 10 H 1.48506 * 109.47259 * 85.98312 * 9 7 5 11 11 H 1.48500 * 109.47051 * 205.98107 * 9 7 5 12 12 H 1.48493 * 109.47749 * 325.98094 * 9 7 5 13 13 C 1.34768 * 120.00133 * 83.63195 * 4 3 2 14 14 O 1.21585 * 120.00279 * 180.02562 * 13 4 3 15 15 N 1.34779 * 120.00370 * 0.02562 * 13 4 3 16 16 C 1.46498 * 120.00197 * 179.72159 * 15 13 4 17 17 C 1.53006 * 109.46839 * 179.97438 * 16 15 13 18 18 C 1.53000 * 117.49925 * 243.62020 * 17 16 15 19 19 C 1.53001 * 117.49528 * 174.99866 * 17 16 15 20 20 H 1.09001 * 109.46974 * 300.00455 * 1 2 3 21 21 H 1.08996 * 109.47007 * 59.99543 * 1 2 3 22 22 H 1.08998 * 109.47324 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46974 * 239.99545 * 2 1 3 24 24 H 1.09006 * 109.47059 * 120.00318 * 2 1 3 25 25 H 1.09001 * 109.47381 * 59.99794 * 3 2 1 26 26 H 1.09003 * 109.46802 * 299.99916 * 3 2 1 27 27 H 0.96998 * 120.00323 * 180.02562 * 8 7 5 28 28 H 0.97002 * 119.99606 * 359.97438 * 15 13 4 29 29 H 1.08990 * 109.47260 * 299.99934 * 16 15 13 30 30 H 1.08998 * 109.47212 * 60.00111 * 16 15 13 31 31 H 1.08995 * 115.55008 * 29.33441 * 17 16 15 32 32 H 1.09002 * 117.50025 * 0.02562 * 18 17 16 33 33 H 1.09001 * 117.49795 * 145.02629 * 18 17 16 34 34 H 1.09005 * 117.50041 * 214.98357 * 19 17 16 35 35 H 1.09001 * 117.50063 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1915 1.5738 1.1800 6 1 5.2576 1.7459 1.1684 7 6 3.5154 1.4855 2.3898 8 7 2.3808 0.8253 2.4622 9 14 4.2182 2.3049 3.9143 10 1 3.7810 3.7234 3.9601 11 1 3.7309 1.5974 5.1257 12 1 5.7012 2.2453 3.8694 13 6 4.1785 1.3131 -1.1608 14 8 5.3944 1.3126 -1.1613 15 7 3.5042 1.1843 -2.3207 16 6 4.2362 1.0499 -3.5825 17 6 3.2415 0.9198 -4.7378 18 6 3.2455 -0.3895 -5.5294 19 6 3.8090 0.8864 -6.1583 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9563 0.8900 26 1 1.6768 1.9562 -0.8900 27 1 1.9084 0.7639 3.3072 28 1 2.5342 1.1843 -2.3203 29 1 4.8594 1.9308 -3.7367 30 1 4.8663 0.1613 -3.5442 31 1 2.2825 1.4163 -4.5906 32 1 3.9565 -1.1584 -5.2270 33 1 2.2889 -0.7547 -5.9030 34 1 3.2231 1.3607 -6.9456 35 1 4.8910 0.9567 -6.2697 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701041560.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:34 Heat of formation + Delta-G solvation = 3.531263 kcal Electronic energy + Delta-G solvation = -16138.900221 eV Core-core repulsion = 13559.369709 eV Total energy + Delta-G solvation = -2579.530512 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.05099 -37.37679 -35.32048 -33.30996 -32.02257 -31.14278 -26.75506 -25.56599 -23.84518 -22.37110 -20.69817 -20.66735 -19.37635 -17.38583 -16.60992 -15.80978 -14.79902 -14.44761 -14.22504 -13.91074 -13.64423 -13.24159 -12.99081 -12.76984 -12.11007 -11.69471 -11.52352 -11.35352 -11.14235 -10.92401 -10.81782 -10.42669 -10.41065 -10.24800 -10.04527 -9.95674 -9.61290 -8.77126 -8.70497 -8.13029 -7.58166 -6.16885 -3.61234 3.27220 3.34599 3.38715 3.70783 4.01249 4.40295 4.42059 4.79805 4.96154 5.05080 5.25076 5.37913 5.47574 5.61505 5.83607 5.93368 5.98284 6.02609 6.10052 6.19059 6.26906 6.34133 6.42148 6.66146 6.86590 6.91681 7.35040 7.45746 7.58593 7.75877 7.89425 8.51929 8.87455 9.36019 9.68035 10.24594 10.85094 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.034058 B = 0.007536 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.926463 B = 3714.571401 C = 4391.026915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.136 3.864 4 N -0.472 5.472 5 C -0.289 4.289 6 H 0.101 0.899 7 C 0.023 3.977 8 N -0.877 5.877 9 Si 0.918 3.082 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.660 3.340 14 O -0.627 6.627 15 N -0.759 5.759 16 C 0.176 3.824 17 C -0.163 4.163 18 C -0.178 4.178 19 C -0.175 4.175 20 H 0.053 0.947 21 H 0.034 0.966 22 H 0.039 0.961 23 H 0.028 0.972 24 H 0.106 0.894 25 H 0.099 0.901 26 H 0.022 0.978 27 H 0.262 0.738 28 H 0.389 0.611 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.815 -0.492 -10.333 11.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.012 3.988 4 N -0.195 5.195 5 C -0.417 4.417 6 H 0.118 0.882 7 C -0.178 4.178 8 N -0.519 5.519 9 Si 0.746 3.254 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.198 1.198 13 C 0.363 3.637 14 O -0.510 6.510 15 N -0.419 5.419 16 C 0.051 3.949 17 C -0.182 4.182 18 C -0.215 4.215 19 C -0.212 4.212 20 H 0.072 0.928 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.124 0.876 25 H 0.117 0.883 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.223 0.777 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.047 -0.526 -10.131 10.922 hybrid contribution -0.398 0.296 0.737 0.888 sum -4.445 -0.231 -9.395 10.396 Atomic orbital electron populations 1.21608 0.97533 0.99950 1.00389 1.22006 0.93708 0.98542 1.02552 1.21305 0.80986 0.96523 1.00002 1.42983 1.04665 1.67716 1.04103 1.19568 0.94564 1.46143 0.81399 0.88163 1.25060 0.96939 0.97289 0.98481 1.70105 1.17786 1.37734 1.26231 0.86065 0.79301 0.79346 0.80736 1.20729 1.21380 1.19762 1.15924 0.85337 0.81924 0.80498 1.90719 1.12142 1.61952 1.86159 1.45132 1.08967 1.82412 1.05344 1.20450 0.92428 1.01105 0.80942 1.22509 1.01204 1.01863 0.92576 1.23056 1.02809 0.91459 1.04214 1.22925 1.01213 1.01776 0.95319 0.92751 0.94678 0.94164 0.95286 0.87572 0.88284 0.95939 0.92734 0.77666 0.92292 0.92436 0.87548 0.88577 0.88955 0.88825 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.91 37.16 0.37 -1.97 16 2 C -0.13 -2.70 5.63 -26.73 -0.15 -2.86 16 3 C 0.14 3.05 4.24 -4.04 -0.02 3.03 16 4 N -0.47 -12.32 2.64 -120.18 -0.32 -12.63 16 5 C -0.29 -8.18 9.41 -14.92 -0.14 -8.32 16 6 H 0.10 3.03 7.32 -52.49 -0.38 2.64 16 7 C 0.02 0.61 4.88 -17.47 -0.09 0.53 16 8 N -0.88 -22.70 8.58 55.49 0.48 -22.22 16 9 Si 0.92 21.00 29.62 -169.99 -5.03 15.97 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 13 C 0.66 16.91 8.18 -86.92 -0.71 16.20 16 14 O -0.63 -18.31 15.95 5.29 0.08 -18.23 16 15 N -0.76 -15.17 5.39 -65.23 -0.35 -15.53 16 16 C 0.18 2.98 5.96 -4.04 -0.02 2.96 16 17 C -0.16 -2.07 5.85 -90.62 -0.53 -2.60 16 18 C -0.18 -1.98 10.18 -26.73 -0.27 -2.25 16 19 C -0.17 -1.83 10.25 -26.73 -0.27 -2.11 16 20 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 21 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.03 0.59 7.83 -51.93 -0.41 0.18 16 24 H 0.11 2.61 6.18 -51.93 -0.32 2.28 16 25 H 0.10 2.41 5.98 -51.93 -0.31 2.10 16 26 H 0.02 0.44 6.71 -51.93 -0.35 0.10 16 27 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.39 6.97 5.92 -40.82 -0.24 6.73 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.03 7.87 -51.93 -0.41 0.62 16 31 H 0.11 1.28 8.04 -51.93 -0.42 0.86 16 32 H 0.10 1.10 8.03 -51.93 -0.42 0.68 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 287.18 15.07 4.33 4.33 Total: -1.00 -30.44 287.18 -8.00 -38.44 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.35 Total: 7.26 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.84 Total: 2.61 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.19 Total: -50.38 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.08 Total: -18.23 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.44 -8.00 -38.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701041560.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.975 kcal (2) G-P(sol) polarization free energy of solvation -30.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds