Wall clock time and date at job start Mon Mar 30 2020 03:11:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52993 * 109.47494 * 2 1
4 4 N 1.46501 * 109.47482 * 180.02562 * 3 2 1
5 5 C 1.37192 * 119.99731 * 263.64147 * 4 3 2
6 6 H 1.07994 * 119.99835 * 190.61700 * 5 4 3
7 7 C 1.38876 * 120.00048 * 10.61303 * 5 4 3
8 8 N 1.31473 * 120.00218 * 24.48906 * 7 5 4
9 9 Si 1.86798 * 119.99781 * 204.48638 * 7 5 4
10 10 H 1.48506 * 109.47259 * 85.98312 * 9 7 5
11 11 H 1.48500 * 109.47051 * 205.98107 * 9 7 5
12 12 H 1.48493 * 109.47749 * 325.98094 * 9 7 5
13 13 C 1.34768 * 120.00133 * 83.63195 * 4 3 2
14 14 O 1.21585 * 120.00279 * 180.02562 * 13 4 3
15 15 N 1.34779 * 120.00370 * 0.02562 * 13 4 3
16 16 C 1.46498 * 120.00197 * 179.72159 * 15 13 4
17 17 C 1.53006 * 109.46839 * 179.97438 * 16 15 13
18 18 C 1.53000 * 117.49925 * 243.62020 * 17 16 15
19 19 C 1.53001 * 117.49528 * 174.99866 * 17 16 15
20 20 H 1.09001 * 109.46974 * 300.00455 * 1 2 3
21 21 H 1.08996 * 109.47007 * 59.99543 * 1 2 3
22 22 H 1.08998 * 109.47324 * 180.02562 * 1 2 3
23 23 H 1.09001 * 109.46974 * 239.99545 * 2 1 3
24 24 H 1.09006 * 109.47059 * 120.00318 * 2 1 3
25 25 H 1.09001 * 109.47381 * 59.99794 * 3 2 1
26 26 H 1.09003 * 109.46802 * 299.99916 * 3 2 1
27 27 H 0.96998 * 120.00323 * 180.02562 * 8 7 5
28 28 H 0.97002 * 119.99606 * 359.97438 * 15 13 4
29 29 H 1.08990 * 109.47260 * 299.99934 * 16 15 13
30 30 H 1.08998 * 109.47212 * 60.00111 * 16 15 13
31 31 H 1.08995 * 115.55008 * 29.33441 * 17 16 15
32 32 H 1.09002 * 117.50025 * 0.02562 * 18 17 16
33 33 H 1.09001 * 117.49795 * 145.02629 * 18 17 16
34 34 H 1.09005 * 117.50041 * 214.98357 * 19 17 16
35 35 H 1.09001 * 117.50063 * 0.02562 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 7 3.5051 1.4424 -0.0006
5 6 4.1915 1.5738 1.1800
6 1 5.2576 1.7459 1.1684
7 6 3.5154 1.4855 2.3898
8 7 2.3808 0.8253 2.4622
9 14 4.2182 2.3049 3.9143
10 1 3.7810 3.7234 3.9601
11 1 3.7309 1.5974 5.1257
12 1 5.7012 2.2453 3.8694
13 6 4.1785 1.3131 -1.1608
14 8 5.3944 1.3126 -1.1613
15 7 3.5042 1.1843 -2.3207
16 6 4.2362 1.0499 -3.5825
17 6 3.2415 0.9198 -4.7378
18 6 3.2455 -0.3895 -5.5294
19 6 3.8090 0.8864 -6.1583
20 1 -0.3633 0.5139 0.8900
21 1 -0.3633 0.5139 -0.8899
22 1 -0.3634 -1.0276 0.0005
23 1 1.8934 -0.5139 -0.8900
24 1 1.8934 -0.5139 0.8900
25 1 1.6768 1.9563 0.8900
26 1 1.6768 1.9562 -0.8900
27 1 1.9084 0.7639 3.3072
28 1 2.5342 1.1843 -2.3203
29 1 4.8594 1.9308 -3.7367
30 1 4.8663 0.1613 -3.5442
31 1 2.2825 1.4163 -4.5906
32 1 3.9565 -1.1584 -5.2270
33 1 2.2889 -0.7547 -5.9030
34 1 3.2231 1.3607 -6.9456
35 1 4.8910 0.9567 -6.2697
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000701041560.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:33
Heat of formation + Delta-G solvation = -15.107714 kcal
Electronic energy + Delta-G solvation = -16139.708468 eV
Core-core repulsion = 13559.369709 eV
Total energy + Delta-G solvation = -2580.338759 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.91209 -38.51230 -37.22447 -35.02767 -33.79808 -33.07306 -28.36198 -27.25025
-25.69959 -23.20595 -22.36883 -21.84611 -21.22458 -19.18271 -18.58392 -17.12263
-16.68005 -16.19025 -15.89309 -15.32280 -15.12375 -14.95299 -14.52735 -14.36793
-13.74889 -13.58380 -13.08765 -12.67423 -12.54037 -12.34652 -12.28630 -12.12432
-12.07274 -11.93941 -11.40822 -11.33616 -11.04838 -10.76541 -10.72505 -9.90540
-9.51672 -8.20389 -5.72391 1.42705 1.45843 1.55907 2.15779 2.40775
2.56313 2.94645 3.19403 3.60042 3.77917 4.02959 4.13733 4.32989
4.36168 4.54762 4.65096 4.70841 4.80308 4.82798 4.87666 5.05288
5.08790 5.24529 5.25708 5.30387 5.38382 5.52528 5.62818 5.84337
5.91090 6.02383 6.48834 6.94426 7.31514 7.72807 8.25097 8.78332
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.034058 B = 0.007536 C = 0.006375
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 821.926463 B = 3714.571401 C = 4391.026915
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.120 4.120
3 C 0.138 3.862
4 N -0.482 5.482
5 C -0.335 4.335
6 H 0.067 0.933
7 C 0.000 4.000
8 N -0.875 5.875
9 Si 0.980 3.020
10 H -0.272 1.272
11 H -0.275 1.275
12 H -0.282 1.282
13 C 0.648 3.352
14 O -0.675 6.675
15 N -0.741 5.741
16 C 0.175 3.825
17 C -0.176 4.176
18 C -0.174 4.174
19 C -0.159 4.159
20 H 0.046 0.954
21 H 0.062 0.938
22 H 0.055 0.945
23 H 0.030 0.970
24 H 0.068 0.932
25 H 0.080 0.920
26 H 0.052 0.948
27 H 0.269 0.731
28 H 0.401 0.599
29 H 0.047 0.953
30 H 0.041 0.959
31 H 0.120 0.880
32 H 0.088 0.912
33 H 0.112 0.888
34 H 0.118 0.882
35 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.876 -0.418 -11.233 13.177
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.159 4.159
3 C 0.015 3.985
4 N -0.205 5.205
5 C -0.463 4.463
6 H 0.085 0.915
7 C -0.202 4.202
8 N -0.514 5.514
9 Si 0.805 3.195
10 H -0.197 1.197
11 H -0.200 1.200
12 H -0.208 1.208
13 C 0.351 3.649
14 O -0.562 6.562
15 N -0.400 5.400
16 C 0.051 3.949
17 C -0.194 4.194
18 C -0.211 4.211
19 C -0.196 4.196
20 H 0.066 0.934
21 H 0.081 0.919
22 H 0.074 0.926
23 H 0.049 0.951
24 H 0.086 0.914
25 H 0.098 0.902
26 H 0.070 0.930
27 H 0.079 0.921
28 H 0.238 0.762
29 H 0.065 0.935
30 H 0.060 0.940
31 H 0.138 0.862
32 H 0.106 0.894
33 H 0.131 0.869
34 H 0.136 0.864
35 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -6.178 -0.466 -11.059 12.677
hybrid contribution 0.237 0.234 1.023 1.076
sum -5.942 -0.232 -10.037 11.666
Atomic orbital electron populations
1.21514 0.94169 1.01376 1.01419 1.21819 0.96524 0.96854 1.00713
1.21385 0.78987 0.97704 1.00414 1.43139 1.06048 1.67610 1.03728
1.19393 0.93788 1.49791 0.83295 0.91542 1.25722 0.97389 0.96715
1.00342 1.70209 1.17786 1.36271 1.27135 0.85157 0.78012 0.78740
0.77596 1.19716 1.19991 1.20790 1.16247 0.85020 0.81952 0.81715
1.90662 1.14374 1.64056 1.87063 1.44963 1.09497 1.80911 1.04676
1.20566 0.93416 0.99819 0.81149 1.22357 1.00825 1.04198 0.92041
1.23144 1.03696 0.90958 1.03271 1.23051 1.01614 1.00907 0.94017
0.93446 0.91882 0.92584 0.95104 0.91397 0.90216 0.92971 0.92123
0.76225 0.93487 0.94023 0.86206 0.89381 0.86935 0.86425 0.88649
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.98 9.91 71.98 0.71 -3.27 16
2 C -0.12 -4.91 5.63 30.59 0.17 -4.74 16
3 C 0.14 6.13 4.24 86.38 0.37 6.50 16
4 N -0.48 -25.81 2.64 -652.41 -1.72 -27.54 16
5 C -0.33 -19.65 9.41 84.01 0.79 -18.86 16
6 H 0.07 4.26 7.32 -2.91 -0.02 4.24 16
7 C 0.00 0.00 4.88 84.90 0.41 0.41 16
8 N -0.88 -45.10 8.58 21.65 0.19 -44.92 16
9 Si 0.98 43.30 29.62 68.60 2.03 45.33 16
10 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16
11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16
12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16
13 C 0.65 34.19 8.18 179.06 1.47 35.66 16
14 O -0.67 -41.36 15.95 -3.99 -0.06 -41.43 16
15 N -0.74 -29.62 5.39 -478.55 -2.58 -32.20 16
16 C 0.18 5.94 5.96 86.38 0.51 6.45 16
17 C -0.18 -4.11 5.85 -10.79 -0.06 -4.18 16
18 C -0.17 -3.41 10.18 30.59 0.31 -3.10 16
19 C -0.16 -2.89 10.25 30.60 0.31 -2.57 16
20 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16
21 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16
22 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16
23 H 0.03 1.22 7.83 -2.39 -0.02 1.20 16
24 H 0.07 3.33 6.18 -2.38 -0.01 3.32 16
25 H 0.08 3.85 5.98 -2.39 -0.01 3.84 16
26 H 0.05 1.97 6.71 -2.39 -0.02 1.95 16
27 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16
28 H 0.40 13.81 5.92 -92.71 -0.55 13.27 16
29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
30 H 0.04 1.53 7.87 -2.39 -0.02 1.51 16
31 H 0.12 2.51 8.04 -2.39 -0.02 2.49 16
32 H 0.09 1.88 8.03 -2.39 -0.02 1.86 16
33 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16
34 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16
35 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16
Total: -1.00 -68.24 287.18 3.37 -64.87
By element:
Atomic # 1 Polarization: 23.06 SS G_CDS: 0.52 Total: 23.59 kcal
Atomic # 6 Polarization: 7.30 SS G_CDS: 5.00 Total: 12.30 kcal
Atomic # 7 Polarization: -100.54 SS G_CDS: -4.12 Total: -104.66 kcal
Atomic # 8 Polarization: -41.36 SS G_CDS: -0.06 Total: -41.43 kcal
Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal
Total: -68.24 3.37 -64.87 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701041560.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.764 kcal
(2) G-P(sol) polarization free energy of solvation -68.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.478 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.872 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.108 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds