Wall clock time and date at job start Mon Mar 30 2020 03:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47494 * 2 1 4 4 N 1.46501 * 109.47482 * 180.02562 * 3 2 1 5 5 C 1.37192 * 119.99731 * 263.64147 * 4 3 2 6 6 H 1.07994 * 119.99835 * 190.61700 * 5 4 3 7 7 C 1.38876 * 120.00048 * 10.61303 * 5 4 3 8 8 N 1.31473 * 120.00218 * 24.48906 * 7 5 4 9 9 Si 1.86798 * 119.99781 * 204.48638 * 7 5 4 10 10 H 1.48506 * 109.47259 * 85.98312 * 9 7 5 11 11 H 1.48500 * 109.47051 * 205.98107 * 9 7 5 12 12 H 1.48493 * 109.47749 * 325.98094 * 9 7 5 13 13 C 1.34768 * 120.00133 * 83.63195 * 4 3 2 14 14 O 1.21585 * 120.00279 * 180.02562 * 13 4 3 15 15 N 1.34779 * 120.00370 * 0.02562 * 13 4 3 16 16 C 1.46498 * 120.00197 * 179.72159 * 15 13 4 17 17 C 1.53006 * 109.46839 * 179.97438 * 16 15 13 18 18 C 1.53000 * 117.49925 * 243.62020 * 17 16 15 19 19 C 1.53001 * 117.49528 * 174.99866 * 17 16 15 20 20 H 1.09001 * 109.46974 * 300.00455 * 1 2 3 21 21 H 1.08996 * 109.47007 * 59.99543 * 1 2 3 22 22 H 1.08998 * 109.47324 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46974 * 239.99545 * 2 1 3 24 24 H 1.09006 * 109.47059 * 120.00318 * 2 1 3 25 25 H 1.09001 * 109.47381 * 59.99794 * 3 2 1 26 26 H 1.09003 * 109.46802 * 299.99916 * 3 2 1 27 27 H 0.96998 * 120.00323 * 180.02562 * 8 7 5 28 28 H 0.97002 * 119.99606 * 359.97438 * 15 13 4 29 29 H 1.08990 * 109.47260 * 299.99934 * 16 15 13 30 30 H 1.08998 * 109.47212 * 60.00111 * 16 15 13 31 31 H 1.08995 * 115.55008 * 29.33441 * 17 16 15 32 32 H 1.09002 * 117.50025 * 0.02562 * 18 17 16 33 33 H 1.09001 * 117.49795 * 145.02629 * 18 17 16 34 34 H 1.09005 * 117.50041 * 214.98357 * 19 17 16 35 35 H 1.09001 * 117.50063 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1915 1.5738 1.1800 6 1 5.2576 1.7459 1.1684 7 6 3.5154 1.4855 2.3898 8 7 2.3808 0.8253 2.4622 9 14 4.2182 2.3049 3.9143 10 1 3.7810 3.7234 3.9601 11 1 3.7309 1.5974 5.1257 12 1 5.7012 2.2453 3.8694 13 6 4.1785 1.3131 -1.1608 14 8 5.3944 1.3126 -1.1613 15 7 3.5042 1.1843 -2.3207 16 6 4.2362 1.0499 -3.5825 17 6 3.2415 0.9198 -4.7378 18 6 3.2455 -0.3895 -5.5294 19 6 3.8090 0.8864 -6.1583 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9563 0.8900 26 1 1.6768 1.9562 -0.8900 27 1 1.9084 0.7639 3.3072 28 1 2.5342 1.1843 -2.3203 29 1 4.8594 1.9308 -3.7367 30 1 4.8663 0.1613 -3.5442 31 1 2.2825 1.4163 -4.5906 32 1 3.9565 -1.1584 -5.2270 33 1 2.2889 -0.7547 -5.9030 34 1 3.2231 1.3607 -6.9456 35 1 4.8910 0.9567 -6.2697 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701041560.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:33 Heat of formation + Delta-G solvation = -15.107714 kcal Electronic energy + Delta-G solvation = -16139.708468 eV Core-core repulsion = 13559.369709 eV Total energy + Delta-G solvation = -2580.338759 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.91209 -38.51230 -37.22447 -35.02767 -33.79808 -33.07306 -28.36198 -27.25025 -25.69959 -23.20595 -22.36883 -21.84611 -21.22458 -19.18271 -18.58392 -17.12263 -16.68005 -16.19025 -15.89309 -15.32280 -15.12375 -14.95299 -14.52735 -14.36793 -13.74889 -13.58380 -13.08765 -12.67423 -12.54037 -12.34652 -12.28630 -12.12432 -12.07274 -11.93941 -11.40822 -11.33616 -11.04838 -10.76541 -10.72505 -9.90540 -9.51672 -8.20389 -5.72391 1.42705 1.45843 1.55907 2.15779 2.40775 2.56313 2.94645 3.19403 3.60042 3.77917 4.02959 4.13733 4.32989 4.36168 4.54762 4.65096 4.70841 4.80308 4.82798 4.87666 5.05288 5.08790 5.24529 5.25708 5.30387 5.38382 5.52528 5.62818 5.84337 5.91090 6.02383 6.48834 6.94426 7.31514 7.72807 8.25097 8.78332 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.034058 B = 0.007536 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.926463 B = 3714.571401 C = 4391.026915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.120 4.120 3 C 0.138 3.862 4 N -0.482 5.482 5 C -0.335 4.335 6 H 0.067 0.933 7 C 0.000 4.000 8 N -0.875 5.875 9 Si 0.980 3.020 10 H -0.272 1.272 11 H -0.275 1.275 12 H -0.282 1.282 13 C 0.648 3.352 14 O -0.675 6.675 15 N -0.741 5.741 16 C 0.175 3.825 17 C -0.176 4.176 18 C -0.174 4.174 19 C -0.159 4.159 20 H 0.046 0.954 21 H 0.062 0.938 22 H 0.055 0.945 23 H 0.030 0.970 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.269 0.731 28 H 0.401 0.599 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 -0.418 -11.233 13.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.159 4.159 3 C 0.015 3.985 4 N -0.205 5.205 5 C -0.463 4.463 6 H 0.085 0.915 7 C -0.202 4.202 8 N -0.514 5.514 9 Si 0.805 3.195 10 H -0.197 1.197 11 H -0.200 1.200 12 H -0.208 1.208 13 C 0.351 3.649 14 O -0.562 6.562 15 N -0.400 5.400 16 C 0.051 3.949 17 C -0.194 4.194 18 C -0.211 4.211 19 C -0.196 4.196 20 H 0.066 0.934 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.049 0.951 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.238 0.762 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.138 0.862 32 H 0.106 0.894 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.178 -0.466 -11.059 12.677 hybrid contribution 0.237 0.234 1.023 1.076 sum -5.942 -0.232 -10.037 11.666 Atomic orbital electron populations 1.21514 0.94169 1.01376 1.01419 1.21819 0.96524 0.96854 1.00713 1.21385 0.78987 0.97704 1.00414 1.43139 1.06048 1.67610 1.03728 1.19393 0.93788 1.49791 0.83295 0.91542 1.25722 0.97389 0.96715 1.00342 1.70209 1.17786 1.36271 1.27135 0.85157 0.78012 0.78740 0.77596 1.19716 1.19991 1.20790 1.16247 0.85020 0.81952 0.81715 1.90662 1.14374 1.64056 1.87063 1.44963 1.09497 1.80911 1.04676 1.20566 0.93416 0.99819 0.81149 1.22357 1.00825 1.04198 0.92041 1.23144 1.03696 0.90958 1.03271 1.23051 1.01614 1.00907 0.94017 0.93446 0.91882 0.92584 0.95104 0.91397 0.90216 0.92971 0.92123 0.76225 0.93487 0.94023 0.86206 0.89381 0.86935 0.86425 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.91 71.98 0.71 -3.27 16 2 C -0.12 -4.91 5.63 30.59 0.17 -4.74 16 3 C 0.14 6.13 4.24 86.38 0.37 6.50 16 4 N -0.48 -25.81 2.64 -652.41 -1.72 -27.54 16 5 C -0.33 -19.65 9.41 84.01 0.79 -18.86 16 6 H 0.07 4.26 7.32 -2.91 -0.02 4.24 16 7 C 0.00 0.00 4.88 84.90 0.41 0.41 16 8 N -0.88 -45.10 8.58 21.65 0.19 -44.92 16 9 Si 0.98 43.30 29.62 68.60 2.03 45.33 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 C 0.65 34.19 8.18 179.06 1.47 35.66 16 14 O -0.67 -41.36 15.95 -3.99 -0.06 -41.43 16 15 N -0.74 -29.62 5.39 -478.55 -2.58 -32.20 16 16 C 0.18 5.94 5.96 86.38 0.51 6.45 16 17 C -0.18 -4.11 5.85 -10.79 -0.06 -4.18 16 18 C -0.17 -3.41 10.18 30.59 0.31 -3.10 16 19 C -0.16 -2.89 10.25 30.60 0.31 -2.57 16 20 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.03 1.22 7.83 -2.39 -0.02 1.20 16 24 H 0.07 3.33 6.18 -2.38 -0.01 3.32 16 25 H 0.08 3.85 5.98 -2.39 -0.01 3.84 16 26 H 0.05 1.97 6.71 -2.39 -0.02 1.95 16 27 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 28 H 0.40 13.81 5.92 -92.71 -0.55 13.27 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.53 7.87 -2.39 -0.02 1.51 16 31 H 0.12 2.51 8.04 -2.39 -0.02 2.49 16 32 H 0.09 1.88 8.03 -2.39 -0.02 1.86 16 33 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -68.24 287.18 3.37 -64.87 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.52 Total: 23.59 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 5.00 Total: 12.30 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -4.12 Total: -104.66 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -0.06 Total: -41.43 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -68.24 3.37 -64.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701041560.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.764 kcal (2) G-P(sol) polarization free energy of solvation -68.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds