Wall clock time and date at job start Mon Mar 30 2020 02:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47038 * 2 1 4 4 H 1.08997 * 109.47085 * 304.99851 * 3 2 1 5 5 C 1.50705 * 109.47283 * 185.00142 * 3 2 1 6 6 H 1.08002 * 119.99608 * 239.99830 * 5 3 2 7 7 C 1.37870 * 119.99956 * 59.99717 * 5 3 2 8 8 N 1.31513 * 120.00489 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99776 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46989 * 90.00190 * 9 7 5 11 11 H 1.48501 * 109.46749 * 209.99841 * 9 7 5 12 12 H 1.48495 * 109.47127 * 329.99916 * 9 7 5 13 13 N 1.46502 * 109.47006 * 65.00078 * 3 2 1 14 14 C 1.34780 * 119.99746 * 274.99722 * 13 3 2 15 15 O 1.21275 * 119.99941 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99784 * 180.02562 * 14 13 3 17 17 H 1.08997 * 112.85417 * 48.80635 * 16 14 13 18 18 C 1.53781 * 113.61342 * 180.02562 * 16 14 13 19 19 C 1.53786 * 87.17350 * 140.02323 * 18 16 14 20 20 H 1.08993 * 113.61491 * 89.15923 * 19 18 16 21 21 N 1.46900 * 113.61132 * 220.06309 * 19 18 16 22 22 C 1.53782 * 113.68885 * 277.53856 * 16 14 13 23 23 H 1.08996 * 109.46980 * 60.00115 * 1 2 3 24 24 H 1.09001 * 109.46891 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47304 * 299.99970 * 1 2 3 26 26 H 1.08998 * 109.47304 * 240.00030 * 2 1 3 27 27 H 1.09004 * 109.47207 * 119.99654 * 2 1 3 28 28 H 0.97000 * 120.00693 * 179.97438 * 8 7 5 29 29 H 0.96998 * 120.00260 * 95.00676 * 13 3 2 30 30 H 1.09002 * 113.61445 * 254.61323 * 18 16 14 31 31 H 1.09002 * 113.61408 * 25.43053 * 18 16 14 32 32 H 1.00907 * 110.99710 * 179.97438 * 21 19 18 33 33 H 1.00899 * 110.99731 * 303.94884 * 21 19 18 34 34 H 1.08997 * 113.61668 * 334.55405 * 22 16 14 35 35 H 1.08994 * 113.61387 * 105.46140 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8802 -1.3811 10 1 6.5539 -0.3519 -0.7597 11 1 6.3834 0.9215 -2.8165 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3396 2.6319 0.4344 16 6 0.0365 3.3386 2.6544 17 1 0.7938 4.0313 3.0216 18 6 -1.3810 3.9341 2.6249 19 6 -1.5420 3.4265 4.0676 20 1 -1.2173 4.1436 4.8215 21 7 -2.8693 2.8631 4.3485 22 6 -0.4801 2.3655 3.7273 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8292 -0.0603 -2.9503 29 1 2.2718 2.1232 1.9978 30 1 -1.3964 5.0207 2.5400 31 1 -2.0455 3.4444 1.9130 32 1 -2.9314 2.5427 5.3033 33 1 -3.5966 3.5315 4.1430 34 1 -0.8989 1.4463 3.3178 35 1 0.2320 2.1854 4.5326 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703458918.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:18 Heat of formation + Delta-G solvation = -30.949050 kcal Electronic energy + Delta-G solvation = -16113.014134 eV Core-core repulsion = 13531.988443 eV Total energy + Delta-G solvation = -2581.025691 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.81533 -37.54682 -34.88259 -32.37520 -31.98357 -30.74195 -27.13176 -25.54241 -24.79620 -22.79736 -20.39267 -19.32665 -19.03148 -17.26152 -16.04279 -15.71877 -15.35892 -15.07126 -14.62802 -14.29712 -13.86817 -12.89218 -12.65545 -12.26862 -12.13709 -11.60746 -11.34579 -11.32768 -11.10385 -10.94188 -10.81852 -10.76835 -10.28132 -10.21117 -10.07302 -9.56795 -8.99852 -8.88786 -8.72821 -8.45275 -7.72636 -6.08668 -4.17993 3.25985 3.32857 3.34958 3.48254 4.14054 4.38735 4.55573 4.70904 4.75408 4.95533 5.02479 5.22439 5.52253 5.75176 5.85723 5.92613 6.13638 6.25312 6.45760 6.46367 6.54160 6.73495 7.10780 7.13278 7.26870 7.32448 7.44088 7.55296 7.67136 7.80224 7.96223 8.23643 8.76886 8.83820 9.25323 9.50125 10.96621 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.048355 B = 0.006370 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.907467 B = 4394.803680 C = 4646.518295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.512 3.488 15 O -0.549 6.549 16 C -0.140 4.140 17 H 0.104 0.896 18 C -0.108 4.108 19 C 0.055 3.945 20 H 0.060 0.940 21 N -0.837 5.837 22 C -0.108 4.108 23 H 0.048 0.952 24 H 0.021 0.979 25 H 0.040 0.960 26 H 0.098 0.902 27 H 0.030 0.970 28 H 0.264 0.736 29 H 0.387 0.613 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.338 0.662 33 H 0.341 0.659 34 H 0.093 0.907 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.324 4.735 12.218 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.297 3.703 15 O -0.427 6.427 16 C -0.162 4.162 17 H 0.122 0.878 18 C -0.146 4.146 19 C -0.056 4.056 20 H 0.077 0.923 21 N -0.367 5.367 22 C -0.147 4.147 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.116 0.884 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.219 0.781 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.112 0.888 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.659 4.070 10.765 13.296 hybrid contribution 1.335 0.746 1.000 1.828 sum -5.324 4.816 11.765 13.782 Atomic orbital electron populations 1.21834 0.98308 0.97954 1.01305 1.21923 0.92645 0.99866 1.02132 1.18763 0.94066 0.89201 0.81238 0.93441 1.21248 0.90834 1.38859 1.06198 0.92177 1.24886 0.98520 0.94880 0.95409 1.69898 1.35066 1.37704 1.09341 0.86472 0.85016 0.78395 0.77343 1.20576 1.21099 1.19914 1.46478 1.14699 1.56069 1.18269 1.20072 0.82538 0.79224 0.88500 1.90647 1.51502 1.60195 1.40401 1.22601 0.98373 0.99574 0.95672 0.87774 1.22887 0.95856 1.00031 0.95807 1.22855 0.89763 0.96275 0.96713 0.92255 1.58805 1.03924 1.44219 1.29762 1.22922 0.96788 0.97915 0.97067 0.93241 0.95964 0.94127 0.88427 0.95138 0.92611 0.78115 0.91720 0.87841 0.85044 0.84657 0.88803 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.15 0.32 -2.84 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 3 C 0.27 6.88 2.24 -69.08 -0.15 6.72 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -25.01 11.29 55.43 0.63 -24.38 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.71 -14.85 5.02 -54.93 -0.28 -15.13 16 14 C 0.51 10.23 5.93 -10.98 -0.07 10.16 16 15 O -0.55 -13.00 13.04 5.56 0.07 -12.93 16 16 C -0.14 -2.05 4.15 -90.96 -0.38 -2.43 16 17 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 18 C -0.11 -1.46 7.19 -25.92 -0.19 -1.65 16 19 C 0.06 0.62 4.97 -66.82 -0.33 0.29 16 20 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 21 N -0.84 -8.60 9.58 -3.91 -0.04 -8.64 16 22 C -0.11 -1.41 7.44 -25.84 -0.19 -1.60 16 23 H 0.05 1.21 7.85 -51.93 -0.41 0.81 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 26 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.39 7.10 8.54 -40.82 -0.35 6.75 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.68 7.43 -51.93 -0.39 1.30 16 32 H 0.34 2.79 9.08 -39.29 -0.36 2.44 16 33 H 0.34 2.99 9.07 -39.29 -0.36 2.63 16 34 H 0.09 1.44 8.10 -51.93 -0.42 1.02 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 283.81 15.07 4.28 4.28 Total: -1.00 -30.38 283.81 -7.24 -37.62 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.35 Total: 10.92 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -1.53 Total: -7.46 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.31 Total: -48.15 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.07 Total: -12.93 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.38 -7.24 -37.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703458918.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.673 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds